Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g0400 ATGGCTTCCTTGGCAGCCTCCACCGCAGCCGCCTCGCTCGGCGTCTCCGAAATGCTCAGAAATCCCCTCAGCTTCTCCGGCGCCTCCGCCAGGTCCGCTCCCTCTGCTTCTAGCCCGGTCACCTTCAAGACCGTTGCGCTCTTCGGGAAGAAGCCGGCTGCCGCTCCCAAGCCGAAGCCCTCCGCCGTCTCTCCGGCCAACGACGAGCTCGCCAAGTGGTATGGTCCCGACAGAAGGATTTTCTTGCCTGATGGGCTGTTGGACCGATCCGAGATCCCGGAGTACTTGAATGGCGAGGAATCGGCCAAACTCAAACGACATTGTTTTTATTTGGTGAATCACAGCTACGGTTACGACCCCTTTGGACTCAGCAAGAAACCAGAAGACTTCAGCAAATACCAAGCATTTGAGTTGATTCATGCACGATGGGCCATGCTTGGAGCTGCTGGTTTCATCATCCCTGAGGCCTTCAACAAATTTGGTGCTAACTGCGGCCCCGAGGCTGTCTGGTTCAAGACTGGAGCTCTGCTTCTTGATGGAAACACATTGAATTACTTTGGAAACAACATTCCCATCAACCTCATTGCCGCCGTCATTGCTGAGGTTGTTCTTGTTGGTGGTGCTGAATATTACAGAATCATCAACGGCTTGAACTTTGAGGACAAGCTTCACCCGGGAGGGCCGTTCGACCCGTTGGGGCTGGCGGACGACCCGGACCAGGCGGCGATCTTGAAGGTGAAGGAGATAAAGAATGGAAGATTGGCAATGTTTGCAATGCTAGGGTTTTACTTCCAAGCTTACGTGACAGGAGAAGGGCCAGTGGAGAACTTGGCCAAGCATTTGAGCGATCCTTTTGGAAACAACTTGCTCACAGTCATTTCTGGGAATGCTGAAAGAGTTCCAACTCTTTAA 912 53.07 MASLAASTAAASLGVSEMLRNPLSFSGASARSAPSASSPVTFKTVALFGKKPAAAPKPKPSAVSPANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEESAKLKRHCFYLVNHSYGYDPFGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINLIAAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11290025 11293025 - Maker00004449 Lcy9g0400 641516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g0400 303 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 19 298 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Lcy9g0400 303 Gene3D Chlorophyll a/b binding protein domain 80 303 - -
Lcy9g0400 303 FunFam Chlorophyll a-b binding protein, chloroplastic 80 303 - -
Lcy9g0400 303 Pfam Chlorophyll A-B binding protein 114 266 IPR022796 -
Lcy9g0400 303 SUPERFAMILY Chlorophyll a-b binding protein 114 293 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy9g0400 Lcy-Chr9:11290025 Lcy8g1625 Lcy-Chr8:42832368 8.72E-58 dispersed
Lcy7g0042 Lcy-Chr7:331102 Lcy9g0400 Lcy-Chr9:11290025 6.03E-20 transposed
Lcy6g1248 Lcy-Chr6:15037695 Lcy9g0400 Lcy-Chr9:11290025 4.51E-54 wgd
Lcy7g1305 Lcy-Chr7:18083029 Lcy9g0400 Lcy-Chr9:11290025 1.16E-17 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g0400 K08916 - csv:101218137 517.309