Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g0416 ATGGACTCCAAGGCGTTCGCTCAAGAATCGTCGCCGCACAACTCAGTCTCCTCCGGCTCTTCTTCCACTTCCTCCTCCTCCTTTTCGTCTTCTTTCGTCGATTCCCATGTCGGTACGCCCTCCTTCGATAACCAAGAGATGAAGATTAGTGGAATTAAAACTAGTGTAGGTGGAGGTGGCGACAGGGGAGGCAGTGATGCTGTGGAAGGTTTGTGGTCCGTGATGGACGCATTGGGAAAGACGAACTGGAATTTCAGTTCAAGTCCATGTCGCGAAGGGTTCGATCATTTAAATGCACCTGATGATATGGTTTTAAATACAATCGGGTGTAATTGCAACTATGCCAACCGTACCATCTGCCACGTCACTAAGATATGGCTGGTTGGTCAGAGTTTGGCAGGCACACTTCCATCTCAACTCTTCAAGTTGCCTTACTTGGAGGACATAATACTTGGCTCCAACAACTTCACTGGCAAGCTATCGGCATCTCTAGGAATGCTGACCAATCTGACCTACTTTAGAATCAGTGACAATAACTTCGTAGGACAAATACCCAGCTTCATTCAAAATTGGGTAAATATTGATACAATAGATATTCGAGGAAGTGGGTTGAGTGGGCCTATTCCGTCTGAAATCAGATTTTTGACAACATTAACCGACTTAGTATTGAGAAATTGCAATATAACCGGAGTTCTGCCTGATTATTTTGCTGGGATGAAATCTTTGACGCTCCTAGACCTCAGCTTTAACAAAATTAGTGGGCAGATTCCTCCCAATTTTCACAGTCTTGTTGGAGTGGATCAAATGTTTTTAACTGGAAACTTGTTAAATGGATCGGTACCTAATTGGATGTTGCATGAAGGAAAGAACATTGATCTCTCTTATAATAAATTCACACCACTCTCTACGGCTATAGGTTGTCAAGCACGAAATTTGAACCTCTTCGCAAGTTCTTCCTTAGACAATAATTCTAACCTTGTATCTTGTTTGTCGAACCGCACTTGTGGGCAAGTTCGGTCGTATGTCCATATAAATTGTGGTGGGAAGGAAGTAACCATTGATGGAGTCAAGTTTGAAGGAGATGAAGAGAGGGTCAATTCATCACAGTTTTTCTCAAGTAAAACAAATTGGGCATTGAGCAATACTGGCGTTTTTATGGATTATTATAATCTCACTACAAATGACTACATTATTGCTAAAAATTCATCTGCGTTGTTTATGACAAATTCCACATTGTATGAGACTGCTCGAATTTCTCCACTGTCTCTTACATACTATGTGTATTGCATGGCAATTGGAAACTACACAATAAGCCTCCATTTTGCAGAAATAATTATTACCAATGATAAAAACTATAGCAGCCTTGGAAGACGCATTTTTGATGTTTATGTGCAGGGAAAGCGAGTGCTGAAGGACTTTAATATTGTAGATGCTGTAGGTGGTGCTGGTAAAGTTGTCATAAAAAAGATTCCAGTTGCTATTACTAGTAGTGGTACTTTGGAGATACGATTTTATTGGGCTGGCAAGGGGGCAACTTATATCCCTACCTACGGAGTCTATGGTCCTTTGATTTCTGCGATTTCAGTAGATCCTGTTTCTCGATCAGAAGGTCAAAATACCTTACCTGTAGGGGCAGTTGTTGGAATTGGAAGTGTGGTTGCAGTGGTCTTCATTATAATTTTGGTTCTCGGAATTTTGTGGTGGAAAGGCTATCTTCGAAGGAAAAATACACATCAGCAAGATTTGAAGGGTCAGAATCTGCCAATTGGTTCATTTACATTAAAGCAAATCACTACTGCAACAAATAACTTTGACACTTCCAATAAGATAGGAGAAGGTGGTTTTGGACCTGTTTATAAGGGCATTCTTATGGATGGTACCATGATTGCGGTGAAGCAACTTTCTACAAAGTCAAAGCAAGGAAACCGTGAATTTGTGAATGAAATAGGCTTGATATCCTCTTTGAATCACCCAAATCTAGTTAAGCTTTATGGATGTTGTACCGAAGCAGATCAACTTTTGCTAGTATATGAATATATGGAAAATAATAGCCTTGCTCAAGCCCACTTCGGACCTCAAGGATGTCGATTAAAATTGGAATGGTCGACAAGGCAAAAGATTTGCATTGGTATAGCCAAAGGCTTGGCTTTTCTTCACCAAGAGTCAAGATTGAAGATAGTTCACCGAGATATCAAAGGTTCTAATGTATTGTTAGATAAAGATCTCAACCCAAAGATATCTGACTTTGGTCTGGCCAAGCTTGATGAAGAAGAAAATACTCACATAAGCACTCGAATTGCTGGAACATTTGGATATATGGCTCCAGAATATGCAACACGAGGCTACTTAACTGATAAAGCAGATGTTTATAGCTTTGGTATCGTAGCATTGGAAATTGTTAGTGGAAGGAGCAACACTATGTTCCGAGGAAAGGATAAGTGTCTTTATCTTCTTGATTGGGCACTTGTATTGAAAGAGAAAGGGAGTTTAATGGAGCTAGTTGATCCAAAGTTGGGGTCCAGCTTCGACCAAGAAGAGGCAATGGCAATGATCAATATTGCTTTCCTTTGCACCAATGTCTCTCCCTCGGCGAGACCTACCATGTCCTCCGTGGTGAGCATGTTGGAAGGTAAGGTTCCTATCAAGGAGTTGGTTGCAGATCCAGATCCAGATGACATGGTAAAAGAGATGAGCGAAATGTGGAGCCTTATTCAACAAAACGAGATAATACCCGACGATGAGAACAAGATTGAGACTGCATCGTTTCTAGAGATGCGATCAACCAGTTCTTCAACATCTATGAAGAGTAGAAACTAG 2817 40.89 MDSKAFAQESSPHNSVSSGSSSTSSSSFSSSFVDSHVGTPSFDNQEMKISGIKTSVGGGGDRGGSDAVEGLWSVMDALGKTNWNFSSSPCREGFDHLNAPDDMVLNTIGCNCNYANRTICHVTKIWLVGQSLAGTLPSQLFKLPYLEDIILGSNNFTGKLSASLGMLTNLTYFRISDNNFVGQIPSFIQNWVNIDTIDIRGSGLSGPIPSEIRFLTTLTDLVLRNCNITGVLPDYFAGMKSLTLLDLSFNKISGQIPPNFHSLVGVDQMFLTGNLLNGSVPNWMLHEGKNIDLSYNKFTPLSTAIGCQARNLNLFASSSLDNNSNLVSCLSNRTCGQVRSYVHINCGGKEVTIDGVKFEGDEERVNSSQFFSSKTNWALSNTGVFMDYYNLTTNDYIIAKNSSALFMTNSTLYETARISPLSLTYYVYCMAIGNYTISLHFAEIIITNDKNYSSLGRRIFDVYVQGKRVLKDFNIVDAVGGAGKVVIKKIPVAITSSGTLEIRFYWAGKGATYIPTYGVYGPLISAISVDPVSRSEGQNTLPVGAVVGIGSVVAVVFIIILVLGILWWKGYLRRKNTHQQDLKGQNLPIGSFTLKQITTATNNFDTSNKIGEGGFGPVYKGILMDGTMIAVKQLSTKSKQGNREFVNEIGLISSLNHPNLVKLYGCCTEADQLLLVYEYMENNSLAQAHFGPQGCRLKLEWSTRQKICIGIAKGLAFLHQESRLKIVHRDIKGSNVLLDKDLNPKISDFGLAKLDEEENTHISTRIAGTFGYMAPEYATRGYLTDKADVYSFGIVALEIVSGRSNTMFRGKDKCLYLLDWALVLKEKGSLMELVDPKLGSSFDQEEAMAMINIAFLCTNVSPSARPTMSSVVSMLEGKVPIKELVADPDPDDMVKEMSEMWSLIQQNEIIPDDENKIETASFLEMRSTSSSTSMKSRN 938
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11658724 11670851 - Maker00004489 Lcy9g0416 641532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g0416 938 ProSitePatterns Serine/Threonine protein kinases active-site signature. 726 738 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g0416 938 Gene3D Phosphorylase Kinase; domain 1 568 679 - -
Lcy9g0416 938 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 339 532 - -
Lcy9g0416 938 MobiDBLite consensus disorder prediction 1 34 - -
Lcy9g0416 938 CDD STKc_IRAK 610 877 - -
Lcy9g0416 938 ProSiteProfiles Protein kinase domain profile. 604 885 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g0416 938 SMART serkin_6 604 875 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g0416 938 Pfam Protein kinase domain 605 873 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g0416 938 Gene3D Ribonuclease Inhibitor 194 311 IPR032675 -
Lcy9g0416 938 Gene3D - 339 531 - -
Lcy9g0416 938 Pfam Malectin domain 341 527 IPR021720 -
Lcy9g0416 938 FunFam Putative LRR receptor-like serine/threonine-protein kinase 680 887 - -
Lcy9g0416 938 SUPERFAMILY L domain-like 115 317 - -
Lcy9g0416 938 Pfam Leucine Rich Repeat 169 191 IPR001611 GO:0005515(InterPro)
Lcy9g0416 938 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 573 679 - -
Lcy9g0416 938 Gene3D Ribonuclease Inhibitor 77 193 IPR032675 -
Lcy9g0416 938 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 130 893 IPR051824 -
Lcy9g0416 938 SUPERFAMILY Protein kinase-like (PK-like) 585 876 IPR011009 -
Lcy9g0416 938 Pfam Leucine rich repeat 217 276 IPR001611 GO:0005515(InterPro)
Lcy9g0416 938 Gene3D Transferase(Phosphotransferase) domain 1 680 886 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g2552 Lcy-Chr1:46507441 Lcy9g0416 Lcy-Chr9:11658724 2.01E-94 dispersed
Lcy6g1628 Lcy-Chr6:29583537 Lcy9g0416 Lcy-Chr9:11658724 2.45E-132 dispersed
Lcy9g0416 Lcy-Chr9:11658724 Lcy9g1392 Lcy-Chr9:38928900 0 dispersed
Lcy9g1393 Lcy-Chr9:38936349 Lcy9g0416 Lcy-Chr9:11658724 8.48E-23 dispersed
Lcy9g1395 Lcy-Chr9:38969802 Lcy9g0416 Lcy-Chr9:11658724 1.00E-11 dispersed
Lcy9g0416 Lcy-Chr9:11658724 Lcy9g0417 Lcy-Chr9:11716416 2.27E-93 tandem
Lcy12g0308 Lcy-Chr12:3785350 Lcy9g0416 Lcy-Chr9:11658724 2.26E-14 transposed
Lcy6g1629 Lcy-Chr6:29610416 Lcy9g0416 Lcy-Chr9:11658724 1.79E-27 transposed
Lcy1g2551 Lcy-Chr1:46483928 Lcy9g0416 Lcy-Chr9:11658724 1.23E-231 wgd
Lcy3g0143 Lcy-Chr3:3575038 Lcy9g0416 Lcy-Chr9:11658724 4.60E-53 wgd
Lcy5g1147 Lcy-Chr5:24670694 Lcy9g0416 Lcy-Chr9:11658724 1.54E-82 wgd
Lcy6g1411 Lcy-Chr6:20994050 Lcy9g0416 Lcy-Chr9:11658724 3.54E-75 wgd
Lcy6g1267 Lcy-Chr6:15708705 Lcy9g0416 Lcy-Chr9:11658724 4.60E-80 wgd
Lcy6g1627 Lcy-Chr6:29573455 Lcy9g0416 Lcy-Chr9:11658724 4.98E-146 wgd
Lcy8g0890 Lcy-Chr8:32132780 Lcy9g0416 Lcy-Chr9:11658724 2.23E-33 wgd
Lcy8g0576 Lcy-Chr8:19645572 Lcy9g0416 Lcy-Chr9:11658724 4.32E-31 wgd
Lcy9g0416 Lcy-Chr9:11658724 Lcy9g0903 Lcy-Chr9:30329421 1.17E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66167 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g0416 - - - 0.0