Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g0417 CCAAATACTACTTATCCAAAATCAAGTTTATTTTTCAACACAAATGCCATTCCATATAGAGGGGTGTACGGACCTCTAATATCTGCGATTATAGTCACACACAATAAGTATTATTGCCTTTCATTTATGTTTCAATATAGTTTATCTTCTATATCTATATACTTAATATATGTTGTCATCTCCTTTCTACTATCACAATACTTTAATGTGGGATCAGGTCTATCAGCAGGAGCTATTGCTGGCATTGTCGTTGGTGGTTTTGTGTTCGTCATTTTAGTATTGGTTGTTCTTCGATGGAAGGGTGACTTAGGCGGGAAGAAGAAAACTCAAGACAAAGAACTACAAGACCTAAAATTACGAACGGGATATTTCAGTTTAAGACAAATCAAAGCAGAGACCAACAACTTTGACTCGGCATATAAGATCGGTGAGGGAGGTTTTGGTCTGTCTACAAGGATGATATCTGCATTACAACATCCGAATCTTGTTAAGCTTTATGGTTGTTGTATTGAAGGAAACCAATTATTGCTTATATATGAGTATCTAGAGAACAATAGTCTTTCGAGTGCACTTTTTAGCACTAAGGGGCATTCACTACATCTGGATTGGCCAATAAAAATGAAGATATGCTTGGGAATAGCAAAGTGGCTGGCTTACCTTCATGAAGAATCTAGATTGAAAATTGTTCACAGAGACATAAAAGCTACTAATGTTCTACTTGATGGAAGCTTGAATGCCAAGATCTCAGACTTTTGGTTGGCTAAGCTTGATGAGGAGGAGAACACCCATTTCAGCACAAGAATTGCAGGCACCATGAAAACTAATACGAATTACAAGCCAAAAGAGGAGTTTGTTTATCTTCTTGACTGGGCTTATGTTCTACAAGAGGAAAGTAACCTATTGGAACTTGTTGATTCGAGGCTTGGGTCATATTACTCAAAAGAGGAGGCCCTGAGGATGCTTCATATAGCTCTGTTATTCACAAACCTGTCTCCGACTCTCAGACCATCCATGTCTTCGATGGTTAGTATGCTTGAAGGTAAAATTATTGCAGTGGAAGTATCAAACATCAAGCGCAACACAGTTGATCGAGATGCAAGGTTTAAAGCTTTTGAGAAGACATCACAAGACAGCCTTACAAGCATTTCAATCTCGTCGCAAGGTGTTCAGATGTAG 1176 38.27 PNTTYPKSSLFFNTNAIPYRGVYGPLISAIIVTHNKYYCLSFMFQYSLSSISIYLIYVVISFLLSQYFNVGSGLSAGAIAGIVVGGFVFVILVLVVLRWKGDLGGKKKTQDKELQDLKLRTGYFSLRQIKAETNNFDSAYKIGEGGFGLSTRMISALQHPNLVKLYGCCIEGNQLLLIYEYLENNSLSSALFSTKGHSLHLDWPIKMKICLGIAKWLAYLHEESRLKIVHRDIKATNVLLDGSLNAKISDFWLAKLDEEENTHFSTRIAGTMKTNTNYKPKEEFVYLLDWAYVLQEESNLLELVDSRLGSYYSKEEALRMLHIALLFTNLSPTLRPSMSSMVSMLEGKIIAVEVSNIKRNTVDRDARFKAFEKTSQDSLTSISISSQGVQM 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11716416 11718454 - Maker00004529 Lcy9g0417 641533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g0417 391 FunFam Os07g0541700 protein 182 271 - -
Lcy9g0417 391 ProSitePatterns Serine/Threonine protein kinases active-site signature. 228 240 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g0417 391 SMART serkin_6 136 345 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g0417 391 SUPERFAMILY Protein kinase-like (PK-like) 121 346 IPR011009 -
Lcy9g0417 391 Gene3D Transferase(Phosphotransferase) domain 1 278 364 - -
Lcy9g0417 391 Gene3D Transferase(Phosphotransferase) domain 1 111 277 - -
Lcy9g0417 391 ProSiteProfiles Protein kinase domain profile. 92 391 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g0417 391 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 13 148 IPR051824 -
Lcy9g0417 391 Pfam Protein tyrosine and serine/threonine kinase 151 263 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy9g0417 Lcy-Chr9:11716416 Lcy9g1374 Lcy-Chr9:38589392 4.74E-160 dispersed
Lcy9g0416 Lcy-Chr9:11658724 Lcy9g0417 Lcy-Chr9:11716416 2.27E-93 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66168 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g0417 - - - 0.0