Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g0424 ATGGATTGCTTGGTAAGTATGCTGTCAGGTGGAGAATTGTTGGTCTGGGTTTTCTTGAAGAAGGAGCAAGCTATTCGAAGGCTCGATTGGGAAAAGCTTGGTGAGTTGAGTGCTTCCAAAGACAGTGAACTCTTTAGAGATTTGAACCTCAAACTTCTCATACGAGAGCACCGTCAACTCAGCCTTCATGGCCCTTTACGCCTTTTCCGCCGTCTTAATCTGCTAGGTCGTCGTCGGCTACCGAATGGCCTTCGGCGATCAGCTGCTTCCACTGTGGGTCAAAGCTACCTAATCAACCAAGCCAACATCCCTGAAAGTGGCCACACGAGCAACGACGGAAGAGTAACGCCGAGAATCGAGCCCAATGTTCCGATGGCTTCGCTCGTGTATTTCCAGTTCACCTTCACTGCGATTACTGTGATTTTACTTGCAGGCTTTGTTCTTGCGAGAATGAACATCAAAGCCTTGATGGCGTTCGTTCTTCTCTGGGTGATTTTCTCCTACACTGTCGGCGCCTTCACGATTTGGGGCGGAGGGTTTCTCTTTCAGTGGGGCGTGATCGATTATTCCAGCGACTACGTGATCCATCTTTCTTCGGGGATTTCTGGTCTGACCGTCGCTTATTGGGTTGGGCCGAGGATTAAGAGTGACAGAGAGAGGTTTCCGCCGAATAACATGCTGCTAATGTTGGCCGGAGCGAGGCTGCTGTGGATGGGGTGGTCGGGATTTAACGACGGCGCGCTGCACTCGGCGAACGTGGTGGCGTCGATAGCTGTGCTGAATACGAACGTGAGCGCGGCGACGAGCCTGCTGGTGTGGACCATTTTGGATGTGGTTTACTTTGGGAAGCCATCTGTTTTATTAAAAAAAGAAGAAGAAGAAGAAAGTGGAAAAACAAAAGTGCCACCGGCGGCTGACGGGGTCGGCACCGGTCACCGGTCGCCGGAGTTAAAGAAAAAGGATGGTGGTTGA 972 51.23 MDCLVSMLSGGELLVWVFLKKEQAIRRLDWEKLGELSASKDSELFRDLNLKLLIREHRQLSLHGPLRLFRRLNLLGRRRLPNGLRRSAASTVGQSYLINQANIPESGHTSNDGRVTPRIEPNVPMASLVYFQFTFTAITVILLAGFVLARMNIKALMAFVLLWVIFSYTVGAFTIWGGGFLFQWGVIDYSSDYVIHLSSGISGLTVAYWVGPRIKSDRERFPPNNMLLMLAGARLLWMGWSGFNDGALHSANVVASIAVLNTNVSAATSLLVWTILDVVYFGKPSVLLKKEEEEESGKTKVPPAADGVGTGHRSPELKKKDGG 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11830104 11832216 + Maker00004562 Lcy9g0424 641540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g0424 323 PRINTS Rhesus blood group protein signature 258 280 IPR002229 GO:0005886(InterPro)
Lcy9g0424 323 PRINTS Rhesus blood group protein signature 132 148 IPR002229 GO:0005886(InterPro)
Lcy9g0424 323 PRINTS Rhesus blood group protein signature 227 245 IPR002229 GO:0005886(InterPro)
Lcy9g0424 323 PANTHER AMMONIUM TRANSPORTER MEP2 94 287 IPR001905 GO:0005886(PANTHER)|GO:0008519(PANTHER)|GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(PANTHER)|GO:0072488(InterPro)
Lcy9g0424 323 Pfam Ammonium Transporter Family 125 287 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Lcy9g0424 323 SUPERFAMILY Ammonium transporter 113 287 - -
Lcy9g0424 323 Gene3D Ammonium transporter AmtB like domains 85 288 IPR029020 -
Lcy9g0424 323 MobiDBLite consensus disorder prediction 291 323 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g0077 Lcy-Chr5:845300 Lcy9g0424 Lcy-Chr9:11830104 1.07E-120 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g0424 K03320 - csv:101207321 337.806