Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g0447 ATGGATACCAAAGGCCGACTCATTGCTGGCTCTCACAACAGAAATGAGTTTGTTCTCATCAATGCTGATGAGGTTGCAAGAGTGACATCTGTGAAAGAGTTGAGTGGTCAAATTTGCCAGATCTGTGGGGATGAGCTAGAAGTGACCGTTGATGGAGAGCCATTTGTTGCTTGTAACGAATGTGCCTTTCCAGTTTGTAGACCTTGCTATGAATATGAAAGAAGAGAGGGCAATCAAGCTTGTCCTCAGTGCAAAACCAGATACAAGCGTCTCAAAGGTAGTCCTCGGGTTGAAGGAGATGAAGAAGAAGATGATATCGATGATCTGGAGAATGAGTTTGACATTGCAAACAAGGATCCTAACAGTGTTTCTGAGGCAATGCTCTATCCTCATCTTGCGGTCGGCCGTGGTTCTCATGCTAATGGTTCTGGAAATATGGCTTCTGACCTCGACTCCTCATCTGTCCCGACTGATATCCCTCTCCTCACCTATGGCCAAGAGGATGCTGGAATTTCCTCCGATAAGCATGCTCTAATTATTCCTCCTTTTATTAGCCGTGGGAAAAAGGTCCATCCGGTGCCATTCACTGATTCTTCCATGTCTGCCAATCCAAGGCCAATGGATCCAAAAAAGGATCTAGCTGTGTATGGATATGGAACTGTTGCGTGGAAGGAAAGAATGGAGGAGTGGCGGAAGAAACAAAATGAAAGACTTCAAGTAATTAAGCATGAAGGTGGCGGTGGAAAAGGCGATGATGAGTTTGACGATACAGATTTGCCTATGATGGATGAAGGGAGGCAACCGCTTTCCAGAAAATTGCCTATCTCCTCTAGCAAGATAAATCCATACAGAATGATAATCGTACTTCGTATTGTTATTCTTTGCCTCTTTTTCCACTATCGTATCCTTCATCCTGTCAATGAGGCATATGGACTGTGGTTAACATCAGTAATCTGTGAGATATGGTTTGCTGCATCATGGATATTGGATCAGTTCCCAAAATGGTGCCCCATTGTCCGAGAAACTTACCTTGATCGGTTATCATTAAGATATGAAAAAGATGGCAAGCCATCTGAGTTGGCTTCTATAGACATTTATGTCAGTACGGTGGATCCATTGAAGGAGCCTCCTCTCATCACAGCAAACACCGTCCTGTCTATTCTTGCTGTCGATTATCCAGTAGACAAGGTGTCATGCTACGTTTCTGATGATGGTGCTGCCATGCTTACTTTTGAAGCCCTTTCAGAAACTTCTGAGTTTGCAAGAAAGTGGGTTCCTTTCTGCAAGAAGTTCAATATTGAACCTCGGGCCCCAGAGTGGTATTTTGCCCAGAAGGTCGACTATTTGAAAGACAAAGTTGATCCTACATTCGTCAGGGAACGACGTGCAATGAAGAGGGACTATGAAGAATTTAAAGTTCGAATCAATGGGCTTGTTTCCATGGCTCAAAAAGTTCCTGAAGATGGGTGGACAATGCAGGATGGAACTCCATGGCCCGGGAACAACGTCAGGGATCATCCCGGGATGATTCAGGTATTCCTTGGTCAAAACGGGGTTCGTGACTTGGAGGGAAATGAATTGCCACGTCTAGTGTATGTATCTCGTGAGAAGAGGCCGGGATTTGATCACCACAAGAAAGCCGGTGCCATGAATGCTCTGGTGCGTGTCTCCGCAATCATCTCGAATGCTCCATACATTTTGAATGTTGATTGTGATCACTACATCAACAACAGCAAGGCACTTAGAGAAGCTATGTGCTTCATGATGGACCCAATTTCTGGAAAAAGAATATGCTATGTGCAGTTTCCACAAAGATTTGATGGGATTGATAGGCACGATCGATACTCAAATCGCAATGTTGTATTCTTTGATATCAACATGAAAGGATTAGATGGTATTCAAGGGCCGATTTATGTCGGAACTGGGTGCGTCTTCAGGAGGCAGGCTCTTTATGGGTATGATGCCCCTGCCAAGAAGAAAACACCAAGAAGGACTTGTAATTGTCTTCCAAAATGGTGCTGCTGTTGCGGTGGAACTAGAAAGAAGACCAAAGCAAAGACTAGTGATAAAAAGAAGTTAAAGACCAAAGATACGTCGAAGCAGATTCATGCACTCGAAAATATTGAGGAAGGAATCGAAGGAATAGATAATGAGAAATCATCTCTGATGCCCCAAGTTAAGTTTGAGAAGAAGTTTGGTCAATCACCAGCATTCATTGCTTCCACACTTATGGAAGACGGTGGCGTGCCTGGAGGAGGGACTTCTGCTTCATTATTGAAAGAAGCCATCCACGTAATCAGTTGCGGTTATGAAGATAAATCTGAGTGGGGTAAAGAGGTGGGGTGGATATATGGGTCTGTTACAGAGGATATTTTAACTGGTTTCAAAATGCATTGCCACGGATGGAGATCAGTTTATTGCATTCCTAAAAGGCCAGCATTCAAGGGTTCAGCTCCTATTAACTTGTCTGATCGTCTACACCAAGTTCTTCGATGGGCTCTTGGATCTGTTGAAATTCTGTTGAGCAGGCACTGCCCAATATGGTACGGATATGGATGTGGTTTGAAGTGGCTTGAGCGTTTCTCGTACATAAACTCCGTTGTTTATCCATTGACGTCGATTCCATTGATCGCTTATTGTACCCTCCCAGCTGTCTGCCTGCTTACAGGGCAGTTTATCGTCCCTGAGCTAAGCAACTATGCCAGTATCATTTTCATGGCCCTTTTCATCTCTATAGCAGCGACCGGTATCCTTGAAATGCAGTGGGGAGGTGTTGGGATTCACGATTGGTGGAGAAACGAGCAGTTCTGGGTTATCGGTGGTGCTTCATCCCATCTTTTTGCGCTTTTCCAGGGTCTGCTAAAGGTTTTGGCTGGTGTCAACACAAATTTCACTGTCACATCCAAGGGAGGAGACGATGGGGAGTTTGCCGAGCTTTACCTCTTCAAGTGGACATCGTTGTTGGTCCCTCCCTTGACCTTATTGATCATAAACATTATCGGAGTAGTCGTCGGAATTTCAGATGCCATCAACAATGGTTACGACTCATGGGGCCCGCTCATCGGTAAGCTGTTCTTTGCATTCTGGGTGATTGTCCATCTGTATCCATTCCTCAAGGGTTTGATGGGGAAGCAAGACAAGGTACCCACCATTATCATTGTGTGGTCAATTCTTCTATCATCCATACTGTCGCTTTTATGGGTCCGAATCAACCCCTTCCTCGACAAGGGTGGCATCGTATTGGAAGTTTGCGGGTTAAACTGTGACGACTAA 3273 44.73 MDTKGRLIAGSHNRNEFVLINADEVARVTSVKELSGQICQICGDELEVTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSPRVEGDEEEDDIDDLENEFDIANKDPNSVSEAMLYPHLAVGRGSHANGSGNMASDLDSSSVPTDIPLLTYGQEDAGISSDKHALIIPPFISRGKKVHPVPFTDSSMSANPRPMDPKKDLAVYGYGTVAWKERMEEWRKKQNERLQVIKHEGGGGKGDDEFDDTDLPMMDEGRQPLSRKLPISSSKINPYRMIIVLRIVILCLFFHYRILHPVNEAYGLWLTSVICEIWFAASWILDQFPKWCPIVRETYLDRLSLRYEKDGKPSELASIDIYVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEWYFAQKVDYLKDKVDPTFVRERRAMKRDYEEFKVRINGLVSMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDLEGNELPRLVYVSREKRPGFDHHKKAGAMNALVRVSAIISNAPYILNVDCDHYINNSKALREAMCFMMDPISGKRICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPAKKKTPRRTCNCLPKWCCCCGGTRKKTKAKTSDKKKLKTKDTSKQIHALENIEEGIEGIDNEKSSLMPQVKFEKKFGQSPAFIASTLMEDGGVPGGGTSASLLKEAIHVISCGYEDKSEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKWLERFSYINSVVYPLTSIPLIAYCTLPAVCLLTGQFIVPELSNYASIIFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALFQGLLKVLAGVNTNFTVTSKGGDDGEFAELYLFKWTSLLVPPLTLLIINIIGVVVGISDAINNGYDSWGPLIGKLFFAFWVIVHLYPFLKGLMGKQDKVPTIIIVWSILLSSILSLLWVRINPFLDKGGIVLEVCGLNCDD 1090
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 12581069 12587993 - Maker00004596 Lcy9g0447 641563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g0447 1090 SUPERFAMILY Nucleotide-diphospho-sugar transferases 377 882 IPR029044 -
Lcy9g0447 1090 CDD mRING-HC-C4C4_CesA 37 87 - -
Lcy9g0447 1090 SUPERFAMILY RING/U-box 28 107 - -
Lcy9g0447 1090 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 510 655 IPR029044 -
Lcy9g0447 1090 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 283 1058 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Lcy9g0447 1090 FunFam Cellulose synthase 480 654 - -
Lcy9g0447 1090 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 112 IPR013083 -
Lcy9g0447 1090 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Lcy9g0447 1090 Coils Coil 99 119 - -
Lcy9g0447 1090 FunFam Cellulose synthase 21 112 - -
Lcy9g0447 1090 Pfam Zinc-binding RING-finger 30 105 IPR027934 -
Lcy9g0447 1090 Pfam Cellulose synthase 363 1077 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy8g0954 Lcy-Chr8:33806725 Lcy9g0447 Lcy-Chr9:12581069 3.84E-288 dispersed
Lcy8g0955 Lcy-Chr8:33846770 Lcy9g0447 Lcy-Chr9:12581069 1.38E-290 dispersed
Lcy9g0447 Lcy-Chr9:12581069 Lcy9g1827 Lcy-Chr9:43369630 0 dispersed
Lcy1g1116 Lcy-Chr1:10222821 Lcy9g0447 Lcy-Chr9:12581069 0 transposed
Lcy2g0192 Lcy-Chr2:1503640 Lcy9g0447 Lcy-Chr9:12581069 0 transposed
Lcy2g1684 Lcy-Chr2:25262027 Lcy9g0447 Lcy-Chr9:12581069 1.09E-58 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g0447 K10999 - csv:101214061 2136.3