Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g0543 ATGGCCGCCCTTCACCAAACCGCCGCCTCTCTCCAGGCCAAGCTCCTTCCAACCGTCCGAATCTCCCGAACCACTCCCGTAAACCTCTCATTCTCCGCCACTTTTCCTTCCCGCAGACTCCGCCTCGGCCACCAGCGCTCTCATGGCGGCGCTAGAATGTCCGCCACTGCTGCCGGAAGCTACGCCGCCGCGCTCGCCGAAGTCGCCGCCTCGAACAACACGCTGGACGCCACAAGCGCCGACGTCGAGAAGATCGAGAGCGTGTTCGCCGATTCGCAGGTGTTCGATTTCTTCGCGAATCCGACGATTAGCATCGAGAAGAAGCTCGAGGTCGTGGACGAGATCGCTTCCTCCTCGTCTCTACAGCCGCATTCGGCGAATTTCTTGAAGATCCTGGTGGACGCGAAGAGGGTCGACATCGTGAAGGAGATCGTGACGGAGTTCGAATTGGTGTACAACAAATTGACGAACACGGAGCTTGCGGTGGTGAGTTCGGTTGTGCAATTGGAGCAGCAGCATTTGGCGCAGATCGCGAAGCAGGTGCAGAAATTGAGCGGAGCGAAGAATGTGAGGATCAAGACGCAGATCGATCCGAGTCTGGTGGCTGGATTCACTGTCAGGTTTGGAAATTCTGGATCGAAACTCATTGATTTGAGCGTTAAGAAACAGCTTGAAGAAATAGCTGCTCAGCTTGATCTCGGCAACATTCAACTGGCTATGAGGATTGTGGATGTTGTTGGTATGAACATGGTAAGAGAACCTCATGAGCGAAAGGGCAATGAGTGCGTTTGCTTGAAGGGATCCTGTGGTGATCTGGTGGGTTGGAGCAGACACAAAAGAGAGAAGAAAAGAGTGGTGGAAGGGGGACCATGGATCTACGATAAAGCGCTTGTTGTCTTTGACGAACTGAACGAGAAGGACAATACGGCGACTCTGGACTTCAGGTACGCAAAATTCTTGTTCCACTTTCACAAGGTTCCTTTTGTGTGCTCAAATAGGAAGTATGCAAAGGCACTAGCAAATTCGGTGGGAAAATTCAAAGAAGTAGAAACAGATGAAGAAGGACGACATTGGGGGGAAACTCTAAGGGTCAAAGTCTGA 1101 52.23 MAALHQTAASLQAKLLPTVRISRTTPVNLSFSATFPSRRLRLGHQRSHGGARMSATAAGSYAAALAEVAASNNTLDATSADVEKIESVFADSQVFDFFANPTISIEKKLEVVDEIASSSSLQPHSANFLKILVDAKRVDIVKEIVTEFELVYNKLTNTELAVVSSVVQLEQQHLAQIAKQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAMRIVDVVGMNMVREPHERKGNECVCLKGSCGDLVGWSRHKREKKRVVEGGPWIYDKALVVFDELNEKDNTATLDFRYAKFLFHFHKVPFVCSNRKYAKALANSVGKFKEVETDEEGRHWGETLRVKV 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 16971139 16973235 - Maker00020683 Lcy9g0543 641659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g0543 366 Hamap ATP synthase subunit delta [atpD]. 53 233 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Lcy9g0543 366 Gene3D - 57 149 IPR026015 -
Lcy9g0543 366 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 190 209 IPR020781 GO:0015986(InterPro)|GO:0016020(InterPro)|GO:0046933(InterPro)
Lcy9g0543 366 NCBIfam ATP synthase F1 subunit delta 58 231 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Lcy9g0543 366 Pfam ATP synthase delta (OSCP) subunit 58 231 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Lcy9g0543 366 PRINTS ATP synthase delta subunit signature 206 224 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Lcy9g0543 366 PRINTS ATP synthase delta subunit signature 188 203 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Lcy9g0543 366 PRINTS ATP synthase delta subunit signature 57 76 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Lcy9g0543 366 PRINTS ATP synthase delta subunit signature 126 137 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Lcy9g0543 366 PRINTS ATP synthase delta subunit signature 137 151 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Lcy9g0543 366 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 54 157 IPR026015 -
Lcy9g0543 366 Pfam Domain of unknown function (DUF4283) 278 366 IPR025558 -
Lcy9g0543 366 PANTHER ATP SYNTHASE DELTA CHAIN 30 231 IPR000711 GO:0009535(PANTHER)|GO:0009772(PANTHER)|GO:0009773(PANTHER)|GO:0015986(InterPro)|GO:0015986(PANTHER)|GO:0045261(PANTHER)|GO:0046933(PANTHER)|GO:0046933(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0454 Lcy-Chr12:5510570 Lcy9g0543 Lcy-Chr9:16971139 5.47E-12 dispersed
Lcy12g1667 Lcy-Chr12:37085976 Lcy9g0543 Lcy-Chr9:16971139 2.30E-10 dispersed
Lcy3g1911 Lcy-Chr3:46346549 Lcy9g0543 Lcy-Chr9:16971139 1.26E-11 dispersed
Lcy9g0543 Lcy-Chr9:16971139 Lcy5g2083 Lcy-Chr5:43924943 1.10E-22 dispersed
Lcy11g2071 Lcy-Chr11:44270004 Lcy9g0543 Lcy-Chr9:16971139 1.26E-19 transposed
Lcy12g0953 Lcy-Chr12:14710517 Lcy9g0543 Lcy-Chr9:16971139 6.03E-12 wgd
Lcy7g1233 Lcy-Chr7:15303562 Lcy9g0543 Lcy-Chr9:16971139 4.13E-20 wgd
Lcy8g0790 Lcy-Chr8:28786838 Lcy9g0543 Lcy-Chr9:16971139 6.25E-23 wgd
Lcy8g0918 Lcy-Chr8:32843297 Lcy9g0543 Lcy-Chr9:16971139 3.13E-20 wgd
Lcy9g0543 Lcy-Chr9:16971139 Lcy9g0915 Lcy-Chr9:30715234 6.41E-16 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g0543 K02113 - csv:101211740 395.201