Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g0581 ATGTCATCATCGATTTCACCGTGTGCGGCGTGCAAACTCCGGAGGCAAAAATGCACACAAGAATGCGTATTCGCTCCTTATTTCCCACCGGAACAGCCACAGAAATTCGCGAACGTGCACAAAGTATTCGGGGCAAGCAACGTGGCGAAGCTTTTGAGCGAACTGAACGCAACGCAGCGGGAAGAAGCAGTGAACTCATTAGCGTACGAGGCCGAGTTCCGTTTGCGTGACCCTGTGTACGGCTGTGTGGGCCTCATCTCACTCCTCCAACACAAACTCAAGCGAATGCAAAGCGACCTCTACAATGCCAAAAAGGAACTCGCCTCTTACATTGGCCCCCAAGCCATGCTCCCAATTCTCCACCCTCCCACCGCCGTCCTACCCTACAACAAGTCCGGGATTATTCCCTCTTCTTCCGGTGGCTCCTCTCAGCAACACCACCAAATACAACAGCAACAGCAGCAGGAAATGTTTAGACCCTACGAGCAGAAACAAACCCAACAGCACCATCATTCTCAACGCCAACACGAGCTGTTGAGGTTCAATGGGTTCGACCCCGGCGGTGGGTTTAATCAAATGAATTCGGCGTCTAATTTGACATTGGGGACATTATTTGTCGATAGTAGCTACCAAATTCAACATTCACATTCGCATTCCCATCACCATCATCATCAGCAGCTTCCGGTACAGCTGTTTCTTCAACCTCAACAAACACAAGTCGAGCAGCAGCAGCAGCAGCAGCAACAAACCCATCAACACCAATCGCAACAAACCCAAAAGCTTGAAGCCACTGCAGATGATGTTTCGACTACAAGGCTGAAAATATTTACATATGCTGTTGTGCAATCTCACAAGGTGGGGGTTGGAGTTGGGGTGGTTATCACAGATGGCGATGACAATTTACATTGTGCAATGAAGATGTTTGAGCATCGAACTCTATCCCCTTTGGCGGCAGAAGTGCAAGCTATTTTTCATGCGATAAGGTTGTTAATTCGTATGCAAATCAAGGAGGCTGATTTATATTCAGATTCGTTAAATGCAATTCGGATGATCACCAAGGACCGGGACACAGATTCTGAGGTGCATCATTGGATCTCACAAATCCAAGAGATGTGTCAAGAATCCCTTTCGGTATCGTTTCTCCATATTGGTAGAACTCTAAATGGAAGGGCGGATGCTTTAGCCGAGAAGGCGCTTCAAATCGTCTCAACGTCGAGACACCGAGGGTGGCGTCTCGACGCCGTCCTCCGGTTTGGACTTCCTCTTCTCTTTTTTTGGGCTGGTCTTGGGCCTTTCTCACCAGACTTTTGGCCTTTGGTGACATTGGGAGCTAACCACACAATTTGTGTTAATTCGGGCCAATTAAGAAGTTTTGGAACCATCTCGATGTTCTTGGACGACGAGGAGGTGAAAAGACCCAAGTGGATTGAAGCGGACCTAAAAAACTACACCAAAAATCGAAGGCTGAAGCGCCATACCCAGAAAGACCGAAAGAAAGGCAGCAAGGCTGGAAAAGGGATCGGCGTCGAGACGCTGACCTTGGCATCTCGACGCAAACGTGAAATTGAAGTGGAGTAG 1578 48.54 MSSSISPCAACKLRRQKCTQECVFAPYFPPEQPQKFANVHKVFGASNVAKLLSELNATQREEAVNSLAYEAEFRLRDPVYGCVGLISLLQHKLKRMQSDLYNAKKELASYIGPQAMLPILHPPTAVLPYNKSGIIPSSSGGSSQQHHQIQQQQQQEMFRPYEQKQTQQHHHSQRQHELLRFNGFDPGGGFNQMNSASNLTLGTLFVDSSYQIQHSHSHSHHHHHQQLPVQLFLQPQQTQVEQQQQQQQQTHQHQSQQTQKLEATADDVSTTRLKIFTYAVVQSHKVGVGVGVVITDGDDNLHCAMKMFEHRTLSPLAAEVQAIFHAIRLLIRMQIKEADLYSDSLNAIRMITKDRDTDSEVHHWISQIQEMCQESLSVSFLHIGRTLNGRADALAEKALQIVSTSRHRGWRLDAVLRFGLPLLFFWAGLGPFSPDFWPLVTLGANHTICVNSGQLRSFGTISMFLDDEEVKRPKWIEADLKNYTKNRRLKRHTQKDRKKGSKAGKGIGVETLTLASRRKREIEVE 525
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 18811423 18821840 + Maker00006558 Lcy9g0581 641697
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g0581 525 Coils Coil 86 106 - -
Lcy9g0581 525 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Lcy9g0581 525 MobiDBLite consensus disorder prediction 131 175 - -
Lcy9g0581 525 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 235 - -
Lcy9g0581 525 SUPERFAMILY Ribonuclease H-like 288 402 IPR012337 -
Lcy9g0581 525 MobiDBLite consensus disorder prediction 487 511 - -
Lcy9g0581 525 CDD RNase_H_like 314 395 IPR044730 -
Lcy9g0581 525 Gene3D - 270 400 IPR036397 GO:0003676(InterPro)
Lcy9g0581 525 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Lcy9g0581 525 MobiDBLite consensus disorder prediction 131 162 - -
Lcy9g0581 525 MobiDBLite consensus disorder prediction 236 264 - -
Lcy9g0581 525 Pfam Reverse transcriptase-like 284 398 IPR002156 GO:0003676(InterPro)|GO:0004523(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0815 Lcy-Chr13:13228009 Lcy9g0581 Lcy-Chr9:18811423 1.62E-16 dispersed
Lcy8g0396 Lcy-Chr8:12210198 Lcy9g0581 Lcy-Chr9:18811423 3.01E-72 dispersed
Lcy8g1716 Lcy-Chr8:43689938 Lcy9g0581 Lcy-Chr9:18811423 7.49E-40 dispersed
Lcy9g0581 Lcy-Chr9:18811423 Lcy9g0807 Lcy-Chr9:26929153 5.08E-22 dispersed
Lcy5g0557 Lcy-Chr5:6256003 Lcy9g0581 Lcy-Chr9:18811423 8.00E-16 transposed
Lcy10g0450 Lcy-Chr10:10541162 Lcy9g0581 Lcy-Chr9:18811423 4.55E-17 wgd
Lcy11g0522 Lcy-Chr11:12170869 Lcy9g0581 Lcy-Chr9:18811423 1.52E-24 wgd
Lcy11g0615 Lcy-Chr11:15757694 Lcy9g0581 Lcy-Chr9:18811423 1.18E-22 wgd
Lcy11g0452 Lcy-Chr11:9391576 Lcy9g0581 Lcy-Chr9:18811423 1.86E-14 wgd
Lcy12g1324 Lcy-Chr12:29079917 Lcy9g0581 Lcy-Chr9:18811423 6.59E-22 wgd
Lcy2g1886 Lcy-Chr2:33424914 Lcy9g0581 Lcy-Chr9:18811423 9.45E-08 wgd
Lcy3g0434 Lcy-Chr3:14778856 Lcy9g0581 Lcy-Chr9:18811423 2.77E-12 wgd
Lcy4g1329 Lcy-Chr4:31167584 Lcy9g0581 Lcy-Chr9:18811423 4.11E-14 wgd
Lcy4g0832 Lcy-Chr4:10795268 Lcy9g0581 Lcy-Chr9:18811423 8.97E-21 wgd
Lcy5g1567 Lcy-Chr5:37143643 Lcy9g0581 Lcy-Chr9:18811423 3.56E-38 wgd
Lcy8g0393 Lcy-Chr8:12067168 Lcy9g0581 Lcy-Chr9:18811423 1.02E-95 wgd
Lcy8g0876 Lcy-Chr8:31551880 Lcy9g0581 Lcy-Chr9:18811423 1.09E-10 wgd
Lcy8g0714 Lcy-Chr8:26425374 Lcy9g0581 Lcy-Chr9:18811423 2.99E-09 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20621 None None None None Lcy TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g0581 - - - 0.0