Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy9g0581 | ATGTCATCATCGATTTCACCGTGTGCGGCGTGCAAACTCCGGAGGCAAAAATGCACACAAGAATGCGTATTCGCTCCTTATTTCCCACCGGAACAGCCACAGAAATTCGCGAACGTGCACAAAGTATTCGGGGCAAGCAACGTGGCGAAGCTTTTGAGCGAACTGAACGCAACGCAGCGGGAAGAAGCAGTGAACTCATTAGCGTACGAGGCCGAGTTCCGTTTGCGTGACCCTGTGTACGGCTGTGTGGGCCTCATCTCACTCCTCCAACACAAACTCAAGCGAATGCAAAGCGACCTCTACAATGCCAAAAAGGAACTCGCCTCTTACATTGGCCCCCAAGCCATGCTCCCAATTCTCCACCCTCCCACCGCCGTCCTACCCTACAACAAGTCCGGGATTATTCCCTCTTCTTCCGGTGGCTCCTCTCAGCAACACCACCAAATACAACAGCAACAGCAGCAGGAAATGTTTAGACCCTACGAGCAGAAACAAACCCAACAGCACCATCATTCTCAACGCCAACACGAGCTGTTGAGGTTCAATGGGTTCGACCCCGGCGGTGGGTTTAATCAAATGAATTCGGCGTCTAATTTGACATTGGGGACATTATTTGTCGATAGTAGCTACCAAATTCAACATTCACATTCGCATTCCCATCACCATCATCATCAGCAGCTTCCGGTACAGCTGTTTCTTCAACCTCAACAAACACAAGTCGAGCAGCAGCAGCAGCAGCAGCAACAAACCCATCAACACCAATCGCAACAAACCCAAAAGCTTGAAGCCACTGCAGATGATGTTTCGACTACAAGGCTGAAAATATTTACATATGCTGTTGTGCAATCTCACAAGGTGGGGGTTGGAGTTGGGGTGGTTATCACAGATGGCGATGACAATTTACATTGTGCAATGAAGATGTTTGAGCATCGAACTCTATCCCCTTTGGCGGCAGAAGTGCAAGCTATTTTTCATGCGATAAGGTTGTTAATTCGTATGCAAATCAAGGAGGCTGATTTATATTCAGATTCGTTAAATGCAATTCGGATGATCACCAAGGACCGGGACACAGATTCTGAGGTGCATCATTGGATCTCACAAATCCAAGAGATGTGTCAAGAATCCCTTTCGGTATCGTTTCTCCATATTGGTAGAACTCTAAATGGAAGGGCGGATGCTTTAGCCGAGAAGGCGCTTCAAATCGTCTCAACGTCGAGACACCGAGGGTGGCGTCTCGACGCCGTCCTCCGGTTTGGACTTCCTCTTCTCTTTTTTTGGGCTGGTCTTGGGCCTTTCTCACCAGACTTTTGGCCTTTGGTGACATTGGGAGCTAACCACACAATTTGTGTTAATTCGGGCCAATTAAGAAGTTTTGGAACCATCTCGATGTTCTTGGACGACGAGGAGGTGAAAAGACCCAAGTGGATTGAAGCGGACCTAAAAAACTACACCAAAAATCGAAGGCTGAAGCGCCATACCCAGAAAGACCGAAAGAAAGGCAGCAAGGCTGGAAAAGGGATCGGCGTCGAGACGCTGACCTTGGCATCTCGACGCAAACGTGAAATTGAAGTGGAGTAG | 1578 | 48.54 | MSSSISPCAACKLRRQKCTQECVFAPYFPPEQPQKFANVHKVFGASNVAKLLSELNATQREEAVNSLAYEAEFRLRDPVYGCVGLISLLQHKLKRMQSDLYNAKKELASYIGPQAMLPILHPPTAVLPYNKSGIIPSSSGGSSQQHHQIQQQQQQEMFRPYEQKQTQQHHHSQRQHELLRFNGFDPGGGFNQMNSASNLTLGTLFVDSSYQIQHSHSHSHHHHHQQLPVQLFLQPQQTQVEQQQQQQQQTHQHQSQQTQKLEATADDVSTTRLKIFTYAVVQSHKVGVGVGVVITDGDDNLHCAMKMFEHRTLSPLAAEVQAIFHAIRLLIRMQIKEADLYSDSLNAIRMITKDRDTDSEVHHWISQIQEMCQESLSVSFLHIGRTLNGRADALAEKALQIVSTSRHRGWRLDAVLRFGLPLLFFWAGLGPFSPDFWPLVTLGANHTICVNSGQLRSFGTISMFLDDEEVKRPKWIEADLKNYTKNRRLKRHTQKDRKKGSKAGKGIGVETLTLASRRKREIEVE | 525 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 18811423 | 18821840 | + | Maker00006558 | Lcy9g0581 | 641697 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy9g0581 | 525 | Coils | Coil | 86 | 106 | - | - | |
| Lcy9g0581 | 525 | ProSiteProfiles | LOB domain profile. | 6 | 107 | IPR004883 | - | |
| Lcy9g0581 | 525 | MobiDBLite | consensus disorder prediction | 131 | 175 | - | - | |
| Lcy9g0581 | 525 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 5 | 235 | - | - | |
| Lcy9g0581 | 525 | SUPERFAMILY | Ribonuclease H-like | 288 | 402 | IPR012337 | - | |
| Lcy9g0581 | 525 | MobiDBLite | consensus disorder prediction | 487 | 511 | - | - | |
| Lcy9g0581 | 525 | CDD | RNase_H_like | 314 | 395 | IPR044730 | - | |
| Lcy9g0581 | 525 | Gene3D | - | 270 | 400 | IPR036397 | GO:0003676(InterPro) | |
| Lcy9g0581 | 525 | Pfam | Lateral organ boundaries (LOB) domain | 7 | 104 | IPR004883 | - | |
| Lcy9g0581 | 525 | MobiDBLite | consensus disorder prediction | 131 | 162 | - | - | |
| Lcy9g0581 | 525 | MobiDBLite | consensus disorder prediction | 236 | 264 | - | - | |
| Lcy9g0581 | 525 | Pfam | Reverse transcriptase-like | 284 | 398 | IPR002156 | GO:0003676(InterPro)|GO:0004523(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy13g0815 | Lcy-Chr13:13228009 | Lcy9g0581 | Lcy-Chr9:18811423 | 1.62E-16 | dispersed | |
| Lcy8g0396 | Lcy-Chr8:12210198 | Lcy9g0581 | Lcy-Chr9:18811423 | 3.01E-72 | dispersed | |
| Lcy8g1716 | Lcy-Chr8:43689938 | Lcy9g0581 | Lcy-Chr9:18811423 | 7.49E-40 | dispersed | |
| Lcy9g0581 | Lcy-Chr9:18811423 | Lcy9g0807 | Lcy-Chr9:26929153 | 5.08E-22 | dispersed | |
| Lcy5g0557 | Lcy-Chr5:6256003 | Lcy9g0581 | Lcy-Chr9:18811423 | 8.00E-16 | transposed | |
| Lcy10g0450 | Lcy-Chr10:10541162 | Lcy9g0581 | Lcy-Chr9:18811423 | 4.55E-17 | wgd | |
| Lcy11g0522 | Lcy-Chr11:12170869 | Lcy9g0581 | Lcy-Chr9:18811423 | 1.52E-24 | wgd | |
| Lcy11g0615 | Lcy-Chr11:15757694 | Lcy9g0581 | Lcy-Chr9:18811423 | 1.18E-22 | wgd | |
| Lcy11g0452 | Lcy-Chr11:9391576 | Lcy9g0581 | Lcy-Chr9:18811423 | 1.86E-14 | wgd | |
| Lcy12g1324 | Lcy-Chr12:29079917 | Lcy9g0581 | Lcy-Chr9:18811423 | 6.59E-22 | wgd | |
| Lcy2g1886 | Lcy-Chr2:33424914 | Lcy9g0581 | Lcy-Chr9:18811423 | 9.45E-08 | wgd | |
| Lcy3g0434 | Lcy-Chr3:14778856 | Lcy9g0581 | Lcy-Chr9:18811423 | 2.77E-12 | wgd | |
| Lcy4g1329 | Lcy-Chr4:31167584 | Lcy9g0581 | Lcy-Chr9:18811423 | 4.11E-14 | wgd | |
| Lcy4g0832 | Lcy-Chr4:10795268 | Lcy9g0581 | Lcy-Chr9:18811423 | 8.97E-21 | wgd | |
| Lcy5g1567 | Lcy-Chr5:37143643 | Lcy9g0581 | Lcy-Chr9:18811423 | 3.56E-38 | wgd | |
| Lcy8g0393 | Lcy-Chr8:12067168 | Lcy9g0581 | Lcy-Chr9:18811423 | 1.02E-95 | wgd | |
| Lcy8g0876 | Lcy-Chr8:31551880 | Lcy9g0581 | Lcy-Chr9:18811423 | 1.09E-10 | wgd | |
| Lcy8g0714 | Lcy-Chr8:26425374 | Lcy9g0581 | Lcy-Chr9:18811423 | 2.99E-09 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 20621 | None | None | None | None | Lcy | TF |
Pathway information