Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g0626 ATGCAATCTGTTCTCAGACAAGTGATAATGACGAGGGAACAAAACGCTCAAGGGTTTTTTCCCAACCCAAGAATCCTCCCAGAAGTAGGTATTGGAACCATCCCCAATAGAACAATGGACAAACTGAAAGAAGAGAGGAAATCCCAAAGCAATAGTAGACCAGAGGTTTTTACTAGATCCTTTCAGCTTACCACTAGAGATCCACTCGAATGGGTGTGGATCATACAAACTCGCAATGACCTTCCACCACAGGGCGTCTGGCTCATTAAAGGAGCGCCACAACCATTTCCCCAAAAAGGGCCTCGTTGCAAAGCCTCAGGATTCCAAAAGACCAACGATTTTGGATTGCCCTCCAAAGGGAGGCCAAGAGAGCTCTACAGTAATAACATAAGTGGAGTAATTCCTAGCGATCTTGGGAATCTGACTAGTTTGGTGAGCTTAGATCTTTATTTGAACACTTTTTCCGGTCCGATTCCAGACACATTGGGGAAGCTGTCGAAACTGCGATTCCTCCGGCTGAACAACAACAGCTTATCGGGTCCCATTCCTATGTCATTGACTAATATTTCATCCCTTCAAGTCTTGGATCTATCGAATAACCATCTCTCAGGCCCAGTTCCAGATAATGGTTCCTTCTCCTTATTCACTCCCATCAGTTTTGCCAACAACTTGGATCTTTGTGGCCCTGTTACTGGACGTCCTTGCCCTGGATCTCCTCCATTTTCTCCTCCTCCACCCTTTGTCCCACCACCACCTATATCTTCACCAGGAGGGAATAGTGCAACTGGAGCTATTGCTGGTGGCGTTGCTGCAGGTGCTGCTTTACTTTTTGCAGCTCCAGCAATTGCATTTGCATGGTGGCGTCGTAGAAAACCCCAAGAAGTTTTCTTTGACGTTCCTGCCGAAGAAGATCCTGAAGTTCATCTGGGACAGCTTAAAAGATTTTCACTGAGAGAACTACAGGTGGCAACTGATAGTTTTAGTAACAAGAACATACTTGGTAGGGGTGGATTTGGCAAAGTCTATAAAGGTCGATTGGCAGATGGTTCTTTAGTAGCTGTAAAAAGACTTAAGGAAGAACGTACGCCTGGTGGAGAGCTGCAATTTCAAACAGAAGTAGAGATGATCAGCATGGCCGTGCATCGGAACCTGCTACGACTTCGTGGATTTTGCATGACGCCAACTGAACGACTTCTTGTTTACCCCTACATGGCCAATGGAAGTGTTGCGTCATGTTTAAGAGAACGACCACCGTCCCAACCACCTCTTGATTGGAAAACGAGGAAGCGAATTGCATTGGGATCTGCAAGAGGGCTGTCTTATTTGCACGATCACTGTGATCCGAAGATCATTCACCGTGACGTAAAAGCTGCAAATATTTTGCTGGATGAGGAGTTTGAAGCCGTTGTAGGGGATTTTGGGTTGGCCAAACTTATGGATTACAAAGATACTCATGTCACTACTGCAGTACGCGGTACTATCGGACATATAGCTCCTGAGTACCTCTCCACCGGGAAATCGTCTGAGAAAACAGATGTTTTTGGGTATGGTATCATGCTTCTAGAGCTGATCACTGGACAAAGGGCTTTCGATTTAGCTCGACTTGCGAATGATGATGATGTCATGCTACTTGATTGGGTGAAAGGACTCCTGAAAGAGAAGAAGCTAGAAATGCTGGTTGATCCTGATCTTCAGAACAATTATGTAGAATCTGAGGTAGAACAGTTGATTCAGGTTGCCCTGCTCTGCACACAAGGCTCCCCGATGGACCGACCGAAGATGTCCGAGGTGGTGAGAATGCTCGAAGGTGACGGATTGGCAGAAAGATGGGACGAGTGGCAAAAGGTGGAAATCCATCGGCAAGAAGTCGATCTATCGCCTCATCCAAATTCCGATTGGATTCTCGATTCAACTGAAAATCTACATGCAGTTGAGCTTTCTGGTCCAAGATGA 1953 46.03 MQSVLRQVIMTREQNAQGFFPNPRILPEVGIGTIPNRTMDKLKEERKSQSNSRPEVFTRSFQLTTRDPLEWVWIIQTRNDLPPQGVWLIKGAPQPFPQKGPRCKASGFQKTNDFGLPSKGRPRELYSNNISGVIPSDLGNLTSLVSLDLYLNTFSGPIPDTLGKLSKLRFLRLNNNSLSGPIPMSLTNISSLQVLDLSNNHLSGPVPDNGSFSLFTPISFANNLDLCGPVTGRPCPGSPPFSPPPPFVPPPPISSPGGNSATGAIAGGVAAGAALLFAAPAIAFAWWRRRKPQEVFFDVPAEEDPEVHLGQLKRFSLRELQVATDSFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPSQPPLDWKTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQNNYVESEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWDEWQKVEIHRQEVDLSPHPNSDWILDSTENLHAVELSGPR 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 20737737 20743620 - Maker00004949 Lcy9g0626 641742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g0626 650 ProSiteProfiles Protein kinase domain profile. 327 614 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g0626 650 MobiDBLite consensus disorder prediction 98 120 - -
Lcy9g0626 650 Pfam Leucine Rich Repeat 143 165 IPR001611 GO:0005515(InterPro)
Lcy9g0626 650 Pfam Leucine Rich Repeat 167 188 IPR001611 GO:0005515(InterPro)
Lcy9g0626 650 Pfam Leucine Rich Repeat 191 209 IPR001611 GO:0005515(InterPro)
Lcy9g0626 650 Pfam Protein tyrosine and serine/threonine kinase 330 601 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g0626 650 FunFam Somatic embryogenesis receptor kinase 1 296 403 - -
Lcy9g0626 650 FunFam Somatic embryogenesis receptor-like kinase 1 404 621 - -
Lcy9g0626 650 SUPERFAMILY L domain-like 125 217 - -
Lcy9g0626 650 ProSitePatterns Serine/Threonine protein kinases active-site signature. 450 462 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g0626 650 CDD STK_BAK1_like 333 604 - -
Lcy9g0626 650 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 122 235 - -
Lcy9g0626 650 SMART serkin_6 327 601 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g0626 650 SUPERFAMILY Protein kinase-like (PK-like) 306 602 IPR011009 -
Lcy9g0626 650 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 124 650 - -
Lcy9g0626 650 Gene3D Ribonuclease Inhibitor 104 239 IPR032675 -
Lcy9g0626 650 Gene3D Phosphorylase Kinase; domain 1 296 403 - -
Lcy9g0626 650 ProSitePatterns Protein kinases ATP-binding region signature. 333 355 IPR017441 GO:0005524(InterPro)
Lcy9g0626 650 Gene3D Transferase(Phosphotransferase) domain 1 404 621 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0273 Lcy-Chr4:3334661 Lcy9g0626 Lcy-Chr9:20737737 2.11E-215 dispersed
Lcy7g0388 Lcy-Chr7:3288478 Lcy9g0626 Lcy-Chr9:20737737 2.02E-161 dispersed
Lcy8g0059 Lcy-Chr8:1537500 Lcy9g0626 Lcy-Chr9:20737737 8.02E-144 dispersed
Lcy9g0626 Lcy-Chr9:20737737 Lcy4g0748 Lcy-Chr4:8992338 2.38E-72 dispersed
Lcy6g0353 Lcy-Chr6:3272780 Lcy9g0626 Lcy-Chr9:20737737 9.25E-215 transposed
Lcy6g0974 Lcy-Chr6:10234575 Lcy9g0626 Lcy-Chr9:20737737 4.60E-263 transposed
Lcy12g1064 Lcy-Chr12:18498706 Lcy9g0626 Lcy-Chr9:20737737 3.88E-58 wgd
Lcy2g1549 Lcy-Chr2:20695316 Lcy9g0626 Lcy-Chr9:20737737 3.74E-50 wgd
Lcy3g0138 Lcy-Chr3:3500292 Lcy9g0626 Lcy-Chr9:20737737 5.64E-55 wgd
Lcy3g0415 Lcy-Chr3:13866247 Lcy9g0626 Lcy-Chr9:20737737 1.13E-58 wgd
Lcy6g1411 Lcy-Chr6:20994050 Lcy9g0626 Lcy-Chr9:20737737 2.20E-72 wgd
Lcy7g1441 Lcy-Chr7:24257963 Lcy9g0626 Lcy-Chr9:20737737 2.87E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66171 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g0626 K13418 - csv:101208695 937.947