Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g0711 ATGAGTTGCTTTCAATGTTGCATGTCAGAGGAGAGATTCAATAGAAAAACTTTGAAAAAGAGCATTAAAGAGTATCATGACACAAAAACTTTAGCCTCGTTTGCCAAAATTTCCTTCCAATCTGGTAGGCTCTGTCCCTTTGCTGCCCCCACATTGATCCCTTGTAAGCATAGACGATGGTACACAACTAAGGAGATTAAGAAGTTGGAAAAAGAAAACATCTTAGCTCAAATTTTTACATTTCGTGAGCTATGCATTGCGACAAATAACTTCGACCGCGAAAATCTATTGGGAGAAGGTGGTTTCGGAAGAGTTTACAAAGGCCTCATTGGAAGCACAAAACAAGTAGCAGCTGTGAAGCAACTTGATCGAAATGGATTTCAAGGGAACAGAGAATTTCTTGTAGAGGTTTTTATGTTGAGCCTTCTTCACCATCCCAATCTTGTCAATTTGGTTGGGTATTGTGCTAATGCAAATCAGAGGATATTGGTTTATGAGTACATGGCTAAAGGTTCCTTGGAGGATCATCTTCTTGATATAACTTCAAAAAACCCACCTCTAGATTGGAAGACAAGGATGAAAATCGTCGAAGGAGCAGCAAGAGGACTCGAATACTTACACGAAACCGTAAATCCTCCAGTGATATTTCGCGACTTCAAAGCTTCAAACATATTGTTGGATGAGGAATTCAATCCAAAGCTCTCAGATTTTGGTCTTGCAAAGTTAGGCCCCACGGGGGATAAGTCTCATGTTTCCACTAGAGTCATGGGAACCTATGGTTATTGTGCTCCTGAATATGCACTTACTGGCCAATTGACGACCAAATCCGATGTCTACAGTTTCGGTGTAGTATTTTTGGAGATAATCACGGGAAGAAGAGTTATAGACAACACAAAACCAAAAGGAGAAAAAAATTTAATTACTTGGGCACAACCACTTTTTAGGGATAAAAAGAAATTCACACTAATGGCAGATCCAAAGCTAGAAAGAAATTACCCAGTGAAGGCTTTGTATCAAGCTTTGGCAGTGGTAGCCATGTGTTTACAAGAGGAAGCAAATACTCGGCCATTAATCAGCGATGTGGTTACTGCTCTTCAATATTTAGCTGTAAACGACGATGTCGATGTAGACATAGATAAAAAATCGGATTCGGAATCGGAGTCGGGGTCGGGATTAAGTTCATATTCAGGTTCAACTACTCATACAAGTAGTAATAATGAAGATAGAAATGTTGATGTTGTAGGTGATGGGAGGTGA 1257 39.78 MSCFQCCMSEERFNRKTLKKSIKEYHDTKTLASFAKISFQSGRLCPFAAPTLIPCKHRRWYTTKEIKKLEKENILAQIFTFRELCIATNNFDRENLLGEGGFGRVYKGLIGSTKQVAAVKQLDRNGFQGNREFLVEVFMLSLLHHPNLVNLVGYCANANQRILVYEYMAKGSLEDHLLDITSKNPPLDWKTRMKIVEGAARGLEYLHETVNPPVIFRDFKASNILLDEEFNPKLSDFGLAKLGPTGDKSHVSTRVMGTYGYCAPEYALTGQLTTKSDVYSFGVVFLEIITGRRVIDNTKPKGEKNLITWAQPLFRDKKKFTLMADPKLERNYPVKALYQALAVVAMCLQEEANTRPLISDVVTALQYLAVNDDVDVDIDKKSDSESESGSGLSSYSGSTTHTSSNNEDRNVDVVGDGR 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 24217776 24222060 + Maker00024420 Lcy9g0711 641827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g0711 418 ProSiteProfiles Protein kinase domain profile. 91 368 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g0711 418 CDD STKc_IRAK 97 366 - -
Lcy9g0711 418 Gene3D Transferase(Phosphotransferase) domain 1 168 387 - -
Lcy9g0711 418 FunFam Serine/threonine-protein kinase PBS1 168 384 - -
Lcy9g0711 418 ProSitePatterns Protein kinases ATP-binding region signature. 97 120 IPR017441 GO:0005524(InterPro)
Lcy9g0711 418 MobiDBLite consensus disorder prediction 379 418 - -
Lcy9g0711 418 MobiDBLite consensus disorder prediction 387 410 - -
Lcy9g0711 418 Pfam Protein kinase domain 93 362 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g0711 418 SUPERFAMILY Protein kinase-like (PK-like) 75 365 IPR011009 -
Lcy9g0711 418 PANTHER OS07G0668900 PROTEIN 62 384 - -
Lcy9g0711 418 Gene3D Phosphorylase Kinase; domain 1 54 167 - -
Lcy9g0711 418 FunFam probable serine/threonine-protein kinase RLCKVII 63 167 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g1411 Lcy-Chr6:20994050 Lcy9g0711 Lcy-Chr9:24217776 1.03E-228 dispersed
Lcy9g0711 Lcy-Chr9:24217776 Lcy9g2323 Lcy-Chr9:47609372 2.20E-136 dispersed
Lcy1g2646 Lcy-Chr1:49901113 Lcy9g0711 Lcy-Chr9:24217776 4.17E-67 wgd
Lcy10g0819 Lcy-Chr10:25136829 Lcy9g0711 Lcy-Chr9:24217776 7.40E-64 wgd
Lcy11g0875 Lcy-Chr11:25989704 Lcy9g0711 Lcy-Chr9:24217776 9.68E-67 wgd
Lcy2g2014 Lcy-Chr2:38132784 Lcy9g0711 Lcy-Chr9:24217776 7.12E-92 wgd
Lcy3g0245 Lcy-Chr3:7572141 Lcy9g0711 Lcy-Chr9:24217776 4.08E-69 wgd
Lcy3g0846 Lcy-Chr3:30427786 Lcy9g0711 Lcy-Chr9:24217776 6.03E-39 wgd
Lcy3g0415 Lcy-Chr3:13866247 Lcy9g0711 Lcy-Chr9:24217776 1.66E-55 wgd
Lcy5g0631 Lcy-Chr5:7729724 Lcy9g0711 Lcy-Chr9:24217776 2.60E-63 wgd
Lcy5g1479 Lcy-Chr5:35449049 Lcy9g0711 Lcy-Chr9:24217776 2.29E-74 wgd
Lcy8g0109 Lcy-Chr8:2555692 Lcy9g0711 Lcy-Chr9:24217776 2.20E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66172 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g0711 - - - 0.0