Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy9g0731 | ATGGCGAACGCTATCACTCTCCAAGAGATTCGAAACGAGTCCGTCGACCTGGAACGTATTCCAATCGGCGAAGTGTTCGAGAAGTTAAAATGCTCAAAGCAAGGTCTCAGTTCAGAGGAAGGAGCCAATCGGCTTCAAGTTTTCGGACCGAACAAACTCGAAGAGAAAAAGGAGAGCAAAATTCTGAAATTTCTGGGGTTTATGTGGAATCCCCTCTCTTGGGTCATGGAAGCAGCGGCTATAATGGCTATTGTCTTGGCGAACGGCGGTGGAAGGTCTCCGGACTGGCAGGATTTTGTGGGAGTCATTGCCCTGCTTTTGATCAACTCAACCATCAGTTTTTTTGAAGAAAACAACGCAGGAAATGCAGCTGCAGCCCTTATGGCCGGCCTTGCTCCCAAAACTAAGGTTCAAAACATACTAAACATTACTATCTTAAATCTTTGCAATTCAAGTGAAGTCGTCAGGAGACAAGTTCATGGAGTGATTGATAAGTTTGCTGAATGCGGACTGCGATCCCTGGGCGTTGCTAGACAGGAAGTACCTGAGAAAACCAAAGAAAGTCCAGGAGAACCATGGCAACTTGTTGGATTGTTAGCTCTGTTTGATCCTCCCAGGCTTGATAGTGCAGAAACCATCAGAAGGGCTCTGAACCTTGGAGTAAATGTCAAGATGATCACTGGTGACCAACTGGCCATTGCCAAGGAAACCGGTCGGAGACTTGGTATGGGATCAAATATGTACCCTTCTACTGCATTACTTGGTCAAGACAGGAGTACATCAGCAGATTCCGTTCCTGTAGACGAGTTGATTGAAACGGCTGATGGATTTGCTGGTGTATTTCCAGAACATAAATATGAAATTGTGAGAAAGTTACAAGAGAAGAAACACATTTGTGGAATGACTGGTGATGGTGTAAATGACGCCCCTGCACTAAAGAGGGCGGATATTGGAATAGCTGTTGCTGATGCAACCGATGCAGCTAGAGGTGCTTCTGACATCGTCCTCACTGAACCGGGATTGAGCGTCATTATCAGTGCAGTACTGACCAGCAGGGCTATCTTCCAGAGGATGAAGAACTATACGATTTATGCAGTTTCCATCACCATTCGTATAGTGTTTGGTTTTATGTTGATTGCTTTGATTTGGAAGTTTGATTTCTCTCCATTCATGGTTTTAATCATAGCTATTCTAAACGATGGAACAATCATGACCATTTCGAAGGACCGAGTTAAGCCTTCTCCACAGCCCGATAGCTGGAAGTTGAAGGAAATTTTTGCCACTGGCATTGTGTTAGGAGGTTACTTGGCACTGATGACAGTTCTATTCTTCTGGCTCGCGAGAGACACCGACTTTTTCTCGAACAAGTTTCATGTAGAATCCCTGAGGACGAACGACCCGAAAATGATGTCAGCATTGTATCTACAAGTTAGTATCGTGAGTCAGGCCCTTATTTTTGTCACCAGGTCTCGAAGTTGGTCCTTTGTCGAACGTCCTGGACTTCTCTTAGTGGGCGCCTTCATAATCGCCCAGCTGGTTGCAACTCTAATAGCAGTGTATCCAGAATGGCATTTTGCAAGGATAAATGGCATTGGCTGGGGGTGGGCTGGAGTGATCTGGCTATATAGTTTGATAACTTACATCCCTCTCGATATTCTCAAATTTACCATCCGCTACGCTCTCAGTGGAAGGGCTTGGAACAATCTTCTACAGAATAAGACTGCTTTCACAACAAAGAAAGATTATGGCAAAGAAGAGAGGGAAGCACAATGGGCTACCACACAAAGGACCATTCATGGTCTTCAACCACCTCAATCTAGCGACGCTTTTTCTGATAGGAATAGTTGCGGGGAGCTTTCCGAAATTGCCGAGCAAGCCAGGCGACGAGCTGAAATTGCAAGGCTCCGTGAGTTGCACACCCTGAAAGGTCGGGTCGAGTCTGTGGTGAAGTTGAAAGGACTAGACATCGATACAATCAATCAACATTATACAGTCTAA | 1998 | 45.35 | MANAITLQEIRNESVDLERIPIGEVFEKLKCSKQGLSSEEGANRLQVFGPNKLEEKKESKILKFLGFMWNPLSWVMEAAAIMAIVLANGGGRSPDWQDFVGVIALLLINSTISFFEENNAGNAAAALMAGLAPKTKVQNILNITILNLCNSSEVVRRQVHGVIDKFAECGLRSLGVARQEVPEKTKESPGEPWQLVGLLALFDPPRLDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGSNMYPSTALLGQDRSTSADSVPVDELIETADGFAGVFPEHKYEIVRKLQEKKHICGMTGDGVNDAPALKRADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMLIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPQPDSWKLKEIFATGIVLGGYLALMTVLFFWLARDTDFFSNKFHVESLRTNDPKMMSALYLQVSIVSQALIFVTRSRSWSFVERPGLLLVGAFIIAQLVATLIAVYPEWHFARINGIGWGWAGVIWLYSLITYIPLDILKFTIRYALSGRAWNNLLQNKTAFTTKKDYGKEEREAQWATTQRTIHGLQPPQSSDAFSDRNSCGELSEIAEQARRRAEIARLRELHTLKGRVESVVKLKGLDIDTINQHYTV | 665 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 24866584 | 24874989 | + | Maker00009524 | Lcy9g0731 | 641847 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy9g0731 | 665 | Gene3D | - | 144 | 202 | IPR023299 | GO:0000166(InterPro) | |
| Lcy9g0731 | 665 | Gene3D | - | 34 | 137 | - | - | |
| Lcy9g0731 | 665 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 145 | 589 | - | GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER) | |
| Lcy9g0731 | 665 | FunFam | Plasma membrane ATPase | 194 | 350 | - | - | |
| Lcy9g0731 | 665 | SUPERFAMILY | HAD-like | 194 | 348 | IPR036412 | - | |
| Lcy9g0731 | 665 | Pfam | Cation transporter/ATPase, N-terminus | 20 | 82 | IPR004014 | - | |
| Lcy9g0731 | 665 | PRINTS | P-type cation-transporting ATPase superfamily signature | 325 | 337 | - | - | |
| Lcy9g0731 | 665 | PRINTS | P-type cation-transporting ATPase superfamily signature | 197 | 208 | - | - | |
| Lcy9g0731 | 665 | PRINTS | P-type cation-transporting ATPase superfamily signature | 302 | 321 | - | - | |
| Lcy9g0731 | 665 | PRINTS | P-type cation-transporting ATPase superfamily signature | 219 | 229 | - | - | |
| Lcy9g0731 | 665 | Gene3D | - | 615 | 665 | - | - | |
| Lcy9g0731 | 665 | SMART | Cation_ATPase_N_a_2 | 16 | 88 | IPR004014 | - | |
| Lcy9g0731 | 665 | Gene3D | - | 66 | 120 | - | - | |
| Lcy9g0731 | 665 | Gene3D | - | 340 | 529 | - | - | |
| Lcy9g0731 | 665 | Pfam | haloacid dehalogenase-like hydrolase | 157 | 316 | - | - | |
| Lcy9g0731 | 665 | FunFam | ATPase 4 plasma membrane-type | 292 | 529 | - | - | |
| Lcy9g0731 | 665 | PRINTS | H+-transporting ATPase (proton pump) signature | 333 | 358 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lcy9g0731 | 665 | PRINTS | H+-transporting ATPase (proton pump) signature | 302 | 318 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lcy9g0731 | 665 | PRINTS | H+-transporting ATPase (proton pump) signature | 159 | 177 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lcy9g0731 | 665 | PRINTS | H+-transporting ATPase (proton pump) signature | 474 | 495 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lcy9g0731 | 665 | PRINTS | H+-transporting ATPase (proton pump) signature | 274 | 290 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lcy9g0731 | 665 | Gene3D | - | 203 | 339 | IPR023214 | - | |
| Lcy9g0731 | 665 | NCBIfam | HAD-IC family P-type ATPase | 277 | 390 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lcy9g0731 | 665 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 145 | 206 | IPR023299 | GO:0000166(InterPro) | |
| Lcy9g0731 | 665 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 16 | 561 | IPR023298 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy2g0155 | Lcy-Chr2:1218747 | Lcy9g0731 | Lcy-Chr9:24866584 | 0 | dispersed | |
| Lcy2g0599 | Lcy-Chr2:5111766 | Lcy9g0731 | Lcy-Chr9:24866584 | 0 | dispersed | |
| Lcy4g1635 | Lcy-Chr4:41307002 | Lcy9g0731 | Lcy-Chr9:24866584 | 1.04E-252 | dispersed | |
| Lcy4g1966 | Lcy-Chr4:46044449 | Lcy9g0731 | Lcy-Chr9:24866584 | 6.98E-17 | dispersed | |
| Lcy5g1438 | Lcy-Chr5:34440815 | Lcy9g0731 | Lcy-Chr9:24866584 | 0 | dispersed | |
| Lcy9g0731 | Lcy-Chr9:24866584 | Lcy9g1776 | Lcy-Chr9:42947610 | 0 | dispersed | |
| Lcy9g0731 | Lcy-Chr9:24866584 | Lcy9g1775 | Lcy-Chr9:42936955 | 0 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy9g0731 | K01535 | - | csv:101219224 | 888.641 |