Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g0745 ATGTCGGAAGAATCTGTGGCTGTTCTGCATATTCAGTACCCAGAATGGCCTGACCATGGGGTTCCTACTGACACACTTGCTGTTCGTAAAATGTTGAAGAGGCTGTATCACTTACCTCCCGATCTTGGCCCGATAGTGGTGCACTGCAGTGCAGGCATTGGAAGAACCGGAACATATTGCACAATTCATAACACAATTCAGAGAATCCTTACCGGAGACATGTCTGCTTTAGATCTTGTCAGTACCATTTCCACATTTAGGTCCCAGCGAATTGGAATGGTTCAAACACTGCAGCTGTGCTTCCAGGAAGTTCATTTTCTTGAGCAGCCGATTATGATCACTGTTCATTCTGGTCACGGATCCTGTCTTTTTAACTTAGAAGCATATAGAATTAGTGGATTAGAGATAAAAATGCCATTAGCTCTAAGATTAACTTACAAATTTAATCCATATTTAGAGGGAATGGAATCTGGATTACTGGGAATCCTTGACTGTAATCTAGATTACCGGGAATCCTGA 519 42.2 MSEESVAVLHIQYPEWPDHGVPTDTLAVRKMLKRLYHLPPDLGPIVVHCSAGIGRTGTYCTIHNTIQRILTGDMSALDLVSTISTFRSQRIGMVQTLQLCFQEVHFLEQPIMITVHSGHGSCLFNLEAYRISGLEIKMPLALRLTYKFNPYLEGMESGLLGILDCNLDYRES 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 25455910 25461044 + Maker00009529 Lcy9g0745 641861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g0745 172 Pfam Protein-tyrosine phosphatase 4 98 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Lcy9g0745 172 PRINTS Protein tyrosine phosphatase signature 77 92 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Lcy9g0745 172 PRINTS Protein tyrosine phosphatase signature 6 23 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Lcy9g0745 172 PRINTS Protein tyrosine phosphatase signature 44 62 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Lcy9g0745 172 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 4 98 IPR050348 GO:0004725(PANTHER)
Lcy9g0745 172 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 26 101 IPR000387 GO:0016311(InterPro)
Lcy9g0745 172 Gene3D Protein tyrosine phosphatase superfamily 1 112 IPR029021 -
Lcy9g0745 172 ProSiteProfiles PTP type protein phosphatase domain profile. 1 98 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Lcy9g0745 172 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 3 98 IPR029021 -
Lcy9g0745 172 ProSitePatterns Tyrosine specific protein phosphatases active site. 47 57 IPR016130 GO:0016311(InterPro)
Lcy9g0745 172 SMART ptp_7 7 108 IPR003595 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g0745 - - - 0.0