Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g0767 ATGGATCCTGAAGATAGTTTGTGTAGTTCTGAAGTTTGGACAAAATCTTCATCTTTTCCAAATATTAATGCTCAGCAACCTTCTCAGAAATGGGTAGATACTTCCATTTTAGATTATGCTATGGATCAACCTTTTCAAGAATTCGAAGAACAGGACGAATCGAAGGCTTCCCTTACCTGTAACCCAAATCAACAAATCGAAATCCTAAATAAAGACAATGATCAGATGAATGCAGCACTTCTAGCCAGTAAAATTCAGGATTGGGACCCGAGAGCAATGTTAAATAATCTTTCTTTCCTTGAGCAGAAGATTCATCAGCTTCAGGAACTCGTGCATTTGATTGTTGGCCGGAGGAGCCAAGTCTTGGGGAGGCCGGATGAACTCGTAGTTCAGCAACAGCAGCTGATAACTGCAGATCTAACTTCAATTATTGTTCAGCTAATCTCAACAGCGGGTAGCCTGCTTCCTTCTGTAAAACATAACTTGTCTGCAGCTGTTCCTCCGGTCGGGCAGCTGGAGCAGCTCGACAGGGTTCTTTTCCCATCTGGAGCTGGGACTAATAATGGTGTTGTTCAGTCACAACATGGTGAAGGAACGAAACTTCCTGAGCTTCCAACCCAAATGGATGAAAGTAGCAAGTGTGCAAAGGAACAGAACATGACTGTTGAAGAACACGAATCGAAGGATGAAGAAGATGCCGATGAGAGTGAGAGCCTCCCACCTGGTTCGTATGAAATATTACAGCTAGAAAAAGAAGAGATCCTAGCACCTCACACCCACTTCTGTGCGATCTGTGGTAAGGGGTTCAAGAGGGATGCAAATTTACGAATGCACATGAGGGGTCATGGCGATGAGTACAAAACAGCAGCTGCTCTTGCAAAGCCGAACAAAGAACTGAGCTCCGAGACGATGCTAATTAAGAGGTATTCCTGCCCCTTCACCGGCTGCAAGCGGAACAAGGATCATAAGAAGTTTCAGCCTCTGAAAACTATTCTGTGTGTTAAAAACCATTACAAGAGAACTCACTGCGACAAAAGCTTCACTTGCAGCAAATGCAACTCCAAGAAATTCTCAGTAATTGCTGATCTCAAAACACATGAGAAGCACTGTGGGAAAGATAAGTGGCTTTGTTCTTGTGGGACTACTTTCTCTAGGAAAGACAAGCTCTTTGGACACATTGCTCTCTTCCAAGGCCACACTCCTGCAATTCCTCTTGACGAACCAAAGGGAACAGCCATGTCCTGTGATCGAGGAGAACGCTACGAAACAACAAATAAGCTTGGGAGCATAAGTTTCAGTTTTGGGTCGATTGCTTCAGGAGGAAGCTCAGTTGAAACCATTGCAGAAGCAAAAGGTGGTGTTGATGATCCTCTTAGTTATTTCTCGCCTCTAAACTACGATTCGTGTAATTTCGGTGGCTTTCATGAGTTCCCTCGACCGCCATTTGAGAACACAGAGAATGCATTTTCGTTCCTTATCCCAGCATCTAGCAATTACACCCAAAAATCTGGTGCAGAATCAAGCTCTAATAATCTTGAATGA 1542 43.84 MDPEDSLCSSEVWTKSSSFPNINAQQPSQKWVDTSILDYAMDQPFQEFEEQDESKASLTCNPNQQIEILNKDNDQMNAALLASKIQDWDPRAMLNNLSFLEQKIHQLQELVHLIVGRRSQVLGRPDELVVQQQQLITADLTSIIVQLISTAGSLLPSVKHNLSAAVPPVGQLEQLDRVLFPSGAGTNNGVVQSQHGEGTKLPELPTQMDESSKCAKEQNMTVEEHESKDEEDADESESLPPGSYEILQLEKEEILAPHTHFCAICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKELSSETMLIKRYSCPFTGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSFTCSKCNSKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDEPKGTAMSCDRGERYETTNKLGSISFSFGSIASGGSSVETIAEAKGGVDDPLSYFSPLNYDSCNFGGFHEFPRPPFENTENAFSFLIPASSNYTQKSGAESSSNNLE 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 26033257 26034798 - Maker00018050 Lcy9g0767 641883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g0767 513 SMART c2h2final6 309 342 IPR013087 -
Lcy9g0767 513 SMART c2h2final6 260 282 IPR013087 -
Lcy9g0767 513 SMART c2h2final6 347 369 IPR013087 -
Lcy9g0767 513 SUPERFAMILY beta-beta-alpha zinc fingers 258 286 IPR036236 -
Lcy9g0767 513 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 63 492 IPR044300 GO:0010044(InterPro)|GO:0010447(InterPro)
Lcy9g0767 513 ProSiteProfiles Zinc finger C2H2 type domain profile. 260 287 IPR013087 -
Lcy9g0767 513 Gene3D Classic Zinc Finger 334 403 - -
Lcy9g0767 513 Gene3D Classic Zinc Finger 244 317 - -
Lcy9g0767 513 ProSitePatterns Zinc finger C2H2 type domain signature. 262 282 IPR013087 -
Lcy9g0767 513 MobiDBLite consensus disorder prediction 186 241 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0797 Lcy-Chr1:6781505 Lcy9g0767 Lcy-Chr9:26033257 4.12E-75 transposed
Lcy5g1012 Lcy-Chr5:19191599 Lcy9g0767 Lcy-Chr9:26033257 3.75E-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20627 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g0767 - - - 0.0