Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g0892 ATGTGCACGCAGAACATCCCTTTTCAGGCTAAACACCCCATCACATGGCCCAAAGCCTATATACTTCCAGGCGACTACGGCTTCGACCCATTGGGGTTGGGGAAGGACCCAACATTTCTAAAGTGGTACAGAGAGGCAGAGCTAATCCATGGGTGGTGGGCAATGGCAGTAGTGGTCAGAATCTTCGTAGGGCAAGCCTGGAGTGGAATCCCATGGTTCGAAGCCAGAGCCGATCCGGGCGCAGTCGCCCCATTCTCCTTCGGAACACTGCTTGGAACCCAGCTTCTGCTAATGGGATGGGTGGAGAGCAAGCAGTGGGTGGATTTCTTCAACCCAGAGTCGCAGTTCGTCGAATGGGCGATGCCATGGTCGAGGACGGCAGAGAACTTCGCAAACGCGACAGGAGAACAGGGGTATCCCAGAGGAAAATTCTTCGATCCGTTGGGATTTGCAGGAAGTATTAAGGATAGGCTTTACATTGCGAACTCGGAGAAGTTGGAGAGATTGAAGTTGGCGAAGATCAAGCATGCAAGGATCTTCATGTTAGCGATGCTCATCTTCTACTTCGAAGCTGGACAGGGGAAGACGCCGTTGGGTGCCCTTGGATTGTAA 612 52.61 MCTQNIPFQAKHPITWPKAYILPGDYGFDPLGLGKDPTFLKWYREAELIHGWWAMAVVVRIFVGQAWSGIPWFEARADPGAVAPFSFGTLLGTQLLLMGWVESKQWVDFFNPESQFVEWAMPWSRTAENFANATGEQGYPRGKFFDPLGFAGSIKDRLYIANSEKLERLKLAKIKHARIFMLAMLIFYFEAGQGKTPLGALGL 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 29874696 29875978 - Maker00017989 Lcy9g0892 642008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g0892 203 Gene3D Chlorophyll a/b binding protein domain 20 202 - -
Lcy9g0892 203 Pfam Chlorophyll A-B binding protein 22 191 IPR022796 -
Lcy9g0892 203 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 22 201 IPR001344 GO:0009416(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
Lcy9g0892 203 SUPERFAMILY Chlorophyll a-b binding protein 22 203 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1345 Lcy-Chr10:36589985 Lcy9g0892 Lcy-Chr9:29874696 1.71E-122 dispersed
Lcy9g0892 Lcy-Chr9:29874696 Lcy2g0568 Lcy-Chr2:4882718 9.69E-19 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g0892 K08917 - csv:101204705 333.569