Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy9g0896 | ATGGAGGAGAAAGAGGGAGTTGATTTCGGGTTTGCAGTAAAAGTGAGCCAAGCTCCAGAGAGCTTCGGGATGATGGATTCGAGACCTGAAAATACAAGCACAGAAAGCGAGCCGACGCCGGCGGCGGCGGAGGCTACGGCGGAAGTAGCTCTGACACCGGCGGCGGCTACAAATGGAAAGAAGAAAAGAGGGAGGCCGAGAAAGTACGGCCCTGATGGGACTGTAGCGCCAACATTGTCGCCAATGCCGATTTCGTCGTCAATTCCGCTGACCGGAGAGTTTCCGGGTTGGAAACGGGGAAGAGGTCGGTCAGTAGAGTCGATTAAGAAGTCGCGGAAGTTCGATTATGAGATTCCAGGTAACAAGGTTGCCTTCTTTGCTGGAGCAGACTTCACACCTCACGTGATCACTGTTAATATTGGTGAGGATGTTAACTTGAAAGTCATGTCATTTTCTCAACAAGGATCTCGGGCAATTTGTATACTCTCTGCTAATGGAATGGTTTCAAATGTTACACTTCGGCAGTCAACATCTTCTGGGGGTACTCTAACATATGAGGGTCGATTTGAGATACTTTCATTGTCTGGATCGTATATGCCTTCTGAGATTGGTGGAACAAAGAGCCGATCTGGAGGGATGAGTGTCTCTTTGGCTGGCCCAGATGGCCGAGTGATGGGTGGAGGACTTGCCGGCATGCTGATCGCAGCTGGTCCAGTGCAGGTGGTGGTGGGCAGTTTCTTACCACCAGGTCACCAGGAGGAAAATAAACCAAAGAAGAGTAGGATGGAACCTACATCAAATGCAATTTCACCTCCAGCCATGAAGCCCATAGTCACATCCACTCTGATAGGAGATAAAGCAGCTTCTTTAGACCCAATGCCAGCTTTTCGAACTCCACCAGTCAACGAAAAACCACCTTTTCCAGAAGAATCAAGAGGTGTCAACCATTCAAACCATGAGGTTTCTTGTTGA | 972 | 49.18 | MEEKEGVDFGFAVKVSQAPESFGMMDSRPENTSTESEPTPAAAEATAEVALTPAAATNGKKKRGRPRKYGPDGTVAPTLSPMPISSSIPLTGEFPGWKRGRGRSVESIKKSRKFDYEIPGNKVAFFAGADFTPHVITVNIGEDVNLKVMSFSQQGSRAICILSANGMVSNVTLRQSTSSGGTLTYEGRFEILSLSGSYMPSEIGGTKSRSGGMSVSLAGPDGRVMGGGLAGMLIAAGPVQVVVGSFLPPGHQEENKPKKSRMEPTSNAISPPAMKPIVTSTLIGDKAASLDPMPAFRTPPVNEKPPFPEESRGVNHSNHEVSC | 323 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 30102688 | 30108488 | + | Maker00018026 | Lcy9g0896 | 642012 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy9g0896 | 323 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 133 | 246 | IPR005175 | - | |
Lcy9g0896 | 323 | CDD | DUF296 | 132 | 246 | IPR005175 | - | |
Lcy9g0896 | 323 | MobiDBLite | consensus disorder prediction | 1 | 84 | - | - | |
Lcy9g0896 | 323 | ProSiteProfiles | PPC domain profile profile. | 128 | 267 | IPR005175 | - | |
Lcy9g0896 | 323 | MobiDBLite | consensus disorder prediction | 246 | 323 | - | - | |
Lcy9g0896 | 323 | Gene3D | - | 133 | 263 | - | - | |
Lcy9g0896 | 323 | FunFam | AT-hook motif nuclear-localized protein 1-like | 133 | 264 | - | - | |
Lcy9g0896 | 323 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 130 | 258 | - | - | |
Lcy9g0896 | 323 | MobiDBLite | consensus disorder prediction | 26 | 40 | - | - | |
Lcy9g0896 | 323 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 | 30 | 267 | IPR039605 | GO:0003680(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy6g0240 | Lcy-Chr6:2114577 | Lcy9g0896 | Lcy-Chr9:30102688 | 1.11E-90 | dispersed | |
Lcy9g0896 | Lcy-Chr9:30102688 | Lcy9g2354 | Lcy-Chr9:47824431 | 4.22E-61 | dispersed | |
Lcy10g0428 | Lcy-Chr10:9334920 | Lcy9g0896 | Lcy-Chr9:30102688 | 4.22E-29 | wgd | |
Lcy6g2037 | Lcy-Chr6:43325648 | Lcy9g0896 | Lcy-Chr9:30102688 | 7.82E-78 | wgd |
Pathway information
