Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g0896 ATGGAGGAGAAAGAGGGAGTTGATTTCGGGTTTGCAGTAAAAGTGAGCCAAGCTCCAGAGAGCTTCGGGATGATGGATTCGAGACCTGAAAATACAAGCACAGAAAGCGAGCCGACGCCGGCGGCGGCGGAGGCTACGGCGGAAGTAGCTCTGACACCGGCGGCGGCTACAAATGGAAAGAAGAAAAGAGGGAGGCCGAGAAAGTACGGCCCTGATGGGACTGTAGCGCCAACATTGTCGCCAATGCCGATTTCGTCGTCAATTCCGCTGACCGGAGAGTTTCCGGGTTGGAAACGGGGAAGAGGTCGGTCAGTAGAGTCGATTAAGAAGTCGCGGAAGTTCGATTATGAGATTCCAGGTAACAAGGTTGCCTTCTTTGCTGGAGCAGACTTCACACCTCACGTGATCACTGTTAATATTGGTGAGGATGTTAACTTGAAAGTCATGTCATTTTCTCAACAAGGATCTCGGGCAATTTGTATACTCTCTGCTAATGGAATGGTTTCAAATGTTACACTTCGGCAGTCAACATCTTCTGGGGGTACTCTAACATATGAGGGTCGATTTGAGATACTTTCATTGTCTGGATCGTATATGCCTTCTGAGATTGGTGGAACAAAGAGCCGATCTGGAGGGATGAGTGTCTCTTTGGCTGGCCCAGATGGCCGAGTGATGGGTGGAGGACTTGCCGGCATGCTGATCGCAGCTGGTCCAGTGCAGGTGGTGGTGGGCAGTTTCTTACCACCAGGTCACCAGGAGGAAAATAAACCAAAGAAGAGTAGGATGGAACCTACATCAAATGCAATTTCACCTCCAGCCATGAAGCCCATAGTCACATCCACTCTGATAGGAGATAAAGCAGCTTCTTTAGACCCAATGCCAGCTTTTCGAACTCCACCAGTCAACGAAAAACCACCTTTTCCAGAAGAATCAAGAGGTGTCAACCATTCAAACCATGAGGTTTCTTGTTGA 972 49.18 MEEKEGVDFGFAVKVSQAPESFGMMDSRPENTSTESEPTPAAAEATAEVALTPAAATNGKKKRGRPRKYGPDGTVAPTLSPMPISSSIPLTGEFPGWKRGRGRSVESIKKSRKFDYEIPGNKVAFFAGADFTPHVITVNIGEDVNLKVMSFSQQGSRAICILSANGMVSNVTLRQSTSSGGTLTYEGRFEILSLSGSYMPSEIGGTKSRSGGMSVSLAGPDGRVMGGGLAGMLIAAGPVQVVVGSFLPPGHQEENKPKKSRMEPTSNAISPPAMKPIVTSTLIGDKAASLDPMPAFRTPPVNEKPPFPEESRGVNHSNHEVSC 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 30102688 30108488 + Maker00018026 Lcy9g0896 642012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g0896 323 Pfam Plants and Prokaryotes Conserved (PCC) domain 133 246 IPR005175 -
Lcy9g0896 323 CDD DUF296 132 246 IPR005175 -
Lcy9g0896 323 MobiDBLite consensus disorder prediction 1 84 - -
Lcy9g0896 323 ProSiteProfiles PPC domain profile profile. 128 267 IPR005175 -
Lcy9g0896 323 MobiDBLite consensus disorder prediction 246 323 - -
Lcy9g0896 323 Gene3D - 133 263 - -
Lcy9g0896 323 FunFam AT-hook motif nuclear-localized protein 1-like 133 264 - -
Lcy9g0896 323 SUPERFAMILY AF0104/ALDC/Ptd012-like 130 258 - -
Lcy9g0896 323 MobiDBLite consensus disorder prediction 26 40 - -
Lcy9g0896 323 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 30 267 IPR039605 GO:0003680(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0240 Lcy-Chr6:2114577 Lcy9g0896 Lcy-Chr9:30102688 1.11E-90 dispersed
Lcy9g0896 Lcy-Chr9:30102688 Lcy9g2354 Lcy-Chr9:47824431 4.22E-61 dispersed
Lcy10g0428 Lcy-Chr10:9334920 Lcy9g0896 Lcy-Chr9:30102688 4.22E-29 wgd
Lcy6g2037 Lcy-Chr6:43325648 Lcy9g0896 Lcy-Chr9:30102688 7.82E-78 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g0896 - - - 0.0