Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g0957 ATGTCGATAGTCGGGCCATCCGATCCGTCTCCGTTATCATACGGAAGTCGCAAGCTTTACTCGTTGAAGGGAACCAAGAATGCTCCTGACTTGTCCACACAAAGATTTGGCTCTGAAAAGCATAGGACGATGTATATGAATGATTCATATTGCAGTGAGAGCTATGAGAAGTATTTCCTCGACTTCCCGATAGAAGAGTTATCGATTTCTGGCATTTCTACCAATTCTTTTCACCAGAACACTGCTTCATATGGGCTAAGGGCTGATTCTCTATCCCCCTTGTGTGATTCATTTACACCTTTTGATGCTTATCAATCAAACTCCGACTCAGCTTGCCTTGAGAGTACAAGTCTAGAACAGCTGGATTTTGAGGATGATCAAGTGAGACTGAAGTTGCAAGAATTGGAGAGAGATCTGCTGGGTGACCCCGATGTGGCTGACTACGAGGACGAGATGTTTGCAAATGGCCAGAGCATGGAAATTGATAGCGAATGGGCAAATTCAATTCGAGATGCACTGCTTCATGATTCGCCAAAAGAATCGTCATCGACGGATTCGAATTTCAGTACTACCAGCAGCAATAAAGATGCATCTCAGATATCTTCACAGAATCCCAGACAAATGCTTTTAGAATGTGCTTCTGCTATCTCAGAAGGGAACTTTGAAGAAGCGTCAGCCATGATAGAACAGCTCCGAGGTATGGTCTCGGTTCAGGGAGATCCCTCACAAAGGATTGCAGCGTATATGGTAGAAGGTCTCGCTGCTCGGATGTTTGAATCGGGAAAATGTCTTTACAAAGCGTTACGATGCAAAGAACCCCCTTCCTCCGATCGTCTCGCAGCTATGCAGATCCTTTTTGAGGTCTGCCCCTGTTTCAAATTTGGCTTTATGGCTGCAAATTGTGCCATTATTGAGGCAGCGAAAGATGAGAAGAAGATTCACATAATCGATTTCGATGTAAGCCAAGGAACTCAGTACATAAAATTGATTCAGATGCTAGCAGCTCAGCCAGGTAAGCCACCACACTTGAGGTTAACTGGTGTTGATGACCCCGAGTCGGTTCAGCGCCCCGTTGGAGGTCTTAGACACATTGGACAACGACTCGAGCAACTGGCAAAAGCGCTGCGAGTTCCATTTGAATTTCGCGCGATTGCCTCTAACGCTTCAGATGTCACTCCCTCAATGCTTGCCTCCCGGCCCGGAGAAGCACTAATAGTAAACTTCGCTTTTCTACTTCACCACATGCCAGATGAAAGCGTTTCAACCGTAAATCTACGAGACAGGCTTCTCCGAATGGTTAAGAGCCTGAAACCAAAACTAGTAACAGTCGTCGAACAGGACATGAATGCAAATACCACCCCGTTCTTCACAAGATTCGTCGAAACCTATAACTACTACGCAGCTGTTTACGACTCTCTTGATGCAACACTCCCAAGAGATAGTCAAGACAGAATAAATGTAGAAAGACAGTGCTTGGCAAAGGACATAGTCAACATTGTAGCTTGTGAAGGTGAAGAACGAGTAGAGAGATACGAAGTCGCCGGGAAATGGCGGGCAAGAATGTCGATGGCTGGCTTCACTTCTTGTTCGATGAGCCAGAACGTGACCGACCCGATCCGTAAACTTATCGAGGAGGAGTATTGCGACCGATTCAAGATGTATGAGGAAATGGGCACACTCCATTTTGGATGGGAAGAGAAAAGCTTGATTGTTACATCAGCATGGAGGTAA 1731 45.75 MSIVGPSDPSPLSYGSRKLYSLKGTKNAPDLSTQRFGSEKHRTMYMNDSYCSESYEKYFLDFPIEELSISGISTNSFHQNTASYGLRADSLSPLCDSFTPFDAYQSNSDSACLESTSLEQLDFEDDQVRLKLQELERDLLGDPDVADYEDEMFANGQSMEIDSEWANSIRDALLHDSPKESSSTDSNFSTTSSNKDASQISSQNPRQMLLECASAISEGNFEEASAMIEQLRGMVSVQGDPSQRIAAYMVEGLAARMFESGKCLYKALRCKEPPSSDRLAAMQILFEVCPCFKFGFMAANCAIIEAAKDEKKIHIIDFDVSQGTQYIKLIQMLAAQPGKPPHLRLTGVDDPESVQRPVGGLRHIGQRLEQLAKALRVPFEFRAIASNASDVTPSMLASRPGEALIVNFAFLLHHMPDESVSTVNLRDRLLRMVKSLKPKLVTVVEQDMNANTTPFFTRFVETYNYYAAVYDSLDATLPRDSQDRINVERQCLAKDIVNIVACEGEERVERYEVAGKWRARMSMAGFTSCSMSQNVTDPIRKLIEEEYCDRFKMYEEMGTLHFGWEEKSLIVTSAWR 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 32038209 32041961 - Maker00017857 Lcy9g0957 642073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g0957 576 ProSiteProfiles GRAS family profile. 196 576 IPR005202 -
Lcy9g0957 576 Pfam GRAS domain family 206 576 IPR005202 -
Lcy9g0957 576 MobiDBLite consensus disorder prediction 176 203 - -
Lcy9g0957 576 MobiDBLite consensus disorder prediction 179 203 - -
Lcy9g0957 576 Coils Coil 118 138 - -
Lcy9g0957 576 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 191 575 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0718 Lcy-Chr1:6147137 Lcy9g0957 Lcy-Chr9:32038209 2.99E-56 dispersed
Lcy6g0725 Lcy-Chr6:7034276 Lcy9g0957 Lcy-Chr9:32038209 8.06E-56 dispersed
Lcy8g1797 Lcy-Chr8:44374285 Lcy9g0957 Lcy-Chr9:32038209 1.79E-58 dispersed
Lcy9g0957 Lcy-Chr9:32038209 Lcy9g1234 Lcy-Chr9:36817728 1.84E-131 dispersed
Lcy12g0052 Lcy-Chr12:783955 Lcy9g0957 Lcy-Chr9:32038209 8.94E-88 transposed
Lcy6g1707 Lcy-Chr6:32744414 Lcy9g0957 Lcy-Chr9:32038209 2.23E-136 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20631 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g0957 K27748 - csv:101206511 1038.1