Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g0965 ATGCTGATGGACCCTAATTTCTCGGCGGCCAAACCACCGCACCCGACGGCGATGGACATCGAACAGATGCCGGAGAATCCCCACCGTGGTTCCTACCACCGCCGCTCCCACTCCGACACTTCCTTCCGCTTCCCTAACCTCGACGAGCTTCTCTTCTTCGACCCTTCTGAGCTCGACCTCTCGATTCTCTCTTCCCCTACTTCTCCCCCTCCCGGCGGCGCTGCCATGGCCGTCGATTCGTCGTCTAATTCCAAGTTGTCCGATGACGCCGTGCGCCCTAAGCCGGAGCCGGTTAACTCCGGACCGTTCGGCGGGCACTTGCGGAGCTTGTCGATGGACTCTGATTTCTTCAAGAATCTGGACCTCGGCGGGGATAGCGGGGAGATCGATTCCTTGGGGAGGAAAACTCCGGTGAGTGAACAGCGGCCAGTTCGTCATCGACATAGCCTGTCCATGGATGGTTCTTCGTCGTCGTTTGAGGCCGATTCGACCCTAGTGATTGATGGAGTGAAGAAGGCAATGGACCCGGAGAGACTTGCGGAGCTAGCCCTAATTGACCCGAAAAGAGCCAAAAGGATTCTTGCAAATAGACAATCGGCGGCTCGTTCGAAAGAGAGGAAGATACGGTACACGAATGAGCTGGAGAGGAAGGTTCAAACTCTGCAGTCTGAAGCAACCACTCTGTCTGCGCAGGTGACAATGCTACAGCGAGATACTACTGGATTAACTGTGGAAAATAAGGAACTCAAACTTCGGTTACAGGCTATGGAGCAGCAAGCACAGCTCCGGGATGCTCTGAGCGAAGCTTTGAAGGAAGAAGTTCAACGGCTTAGAATAGCAGCTGGCCAGGTTCCACCAATCAATGGAAATCCTTTCAACCGACCTCCTCAATATCCATCATCCCGGCCGCCTGTACACCATTTTAGTAGCTCCCATGCCCAGCAGGGTCAACAGCAGCCACCACCCATCTTGGCCACAAACCAGCAGCAATCAGATCCCAAATGGACGAACTCGTCCCAGCTCCTTGGTCGTAATCCTGATGGCCAAGCAAAACCTTAG 1059 54.58 MLMDPNFSAAKPPHPTAMDIEQMPENPHRGSYHRRSHSDTSFRFPNLDELLFFDPSELDLSILSSPTSPPPGGAAMAVDSSSNSKLSDDAVRPKPEPVNSGPFGGHLRSLSMDSDFFKNLDLGGDSGEIDSLGRKTPVSEQRPVRHRHSLSMDGSSSSFEADSTLVIDGVKKAMDPERLAELALIDPKRAKRILANRQSAARSKERKIRYTNELERKVQTLQSEATTLSAQVTMLQRDTTGLTVENKELKLRLQAMEQQAQLRDALSEALKEEVQRLRIAAGQVPPINGNPFNRPPQYPSSRPPVHHFSSSHAQQGQQQPPPILATNQQQSDPKWTNSSQLLGRNPDGQAKP 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 32325539 32328849 - Maker00017591 Lcy9g0965 642081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g0965 352 CDD bZIP_plant_RF2 189 238 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g0965 352 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 19 331 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lcy9g0965 352 MobiDBLite consensus disorder prediction 281 352 - -
Lcy9g0965 352 MobiDBLite consensus disorder prediction 303 345 - -
Lcy9g0965 352 Pfam Basic region leucine zipper 186 237 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g0965 352 SUPERFAMILY Leucine zipper domain 188 240 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g0965 352 MobiDBLite consensus disorder prediction 1 39 - -
Lcy9g0965 352 Coils Coil 211 259 - -
Lcy9g0965 352 MobiDBLite consensus disorder prediction 63 105 - -
Lcy9g0965 352 FunFam Transcription factor VIP1 187 240 - -
Lcy9g0965 352 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 186 249 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g0965 352 Gene3D - 186 246 - -
Lcy9g0965 352 SMART brlzneu 184 248 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g0965 352 MobiDBLite consensus disorder prediction 127 158 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g0949 Lcy-Chr3:32928711 Lcy9g0965 Lcy-Chr9:32325539 5.84E-37 dispersed
Lcy4g0348 Lcy-Chr4:4423904 Lcy9g0965 Lcy-Chr9:32325539 9.81E-40 dispersed
Lcy7g1073 Lcy-Chr7:11487583 Lcy9g0965 Lcy-Chr9:32325539 3.28E-51 dispersed
Lcy8g1689 Lcy-Chr8:43466071 Lcy9g0965 Lcy-Chr9:32325539 2.17E-41 dispersed
Lcy9g0965 Lcy-Chr9:32325539 Lcy9g1335 Lcy-Chr9:38118924 5.94E-09 dispersed
Lcy4g0522 Lcy-Chr4:6287019 Lcy9g0965 Lcy-Chr9:32325539 8.06E-10 transposed
Lcy8g1404 Lcy-Chr8:40691570 Lcy9g0965 Lcy-Chr9:32325539 4.76E-10 transposed
Lcy10g1347 Lcy-Chr10:36623456 Lcy9g0965 Lcy-Chr9:32325539 4.84E-105 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20633 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g0965 K20557 - csv:101207973 626.32