Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy9g0965 | ATGCTGATGGACCCTAATTTCTCGGCGGCCAAACCACCGCACCCGACGGCGATGGACATCGAACAGATGCCGGAGAATCCCCACCGTGGTTCCTACCACCGCCGCTCCCACTCCGACACTTCCTTCCGCTTCCCTAACCTCGACGAGCTTCTCTTCTTCGACCCTTCTGAGCTCGACCTCTCGATTCTCTCTTCCCCTACTTCTCCCCCTCCCGGCGGCGCTGCCATGGCCGTCGATTCGTCGTCTAATTCCAAGTTGTCCGATGACGCCGTGCGCCCTAAGCCGGAGCCGGTTAACTCCGGACCGTTCGGCGGGCACTTGCGGAGCTTGTCGATGGACTCTGATTTCTTCAAGAATCTGGACCTCGGCGGGGATAGCGGGGAGATCGATTCCTTGGGGAGGAAAACTCCGGTGAGTGAACAGCGGCCAGTTCGTCATCGACATAGCCTGTCCATGGATGGTTCTTCGTCGTCGTTTGAGGCCGATTCGACCCTAGTGATTGATGGAGTGAAGAAGGCAATGGACCCGGAGAGACTTGCGGAGCTAGCCCTAATTGACCCGAAAAGAGCCAAAAGGATTCTTGCAAATAGACAATCGGCGGCTCGTTCGAAAGAGAGGAAGATACGGTACACGAATGAGCTGGAGAGGAAGGTTCAAACTCTGCAGTCTGAAGCAACCACTCTGTCTGCGCAGGTGACAATGCTACAGCGAGATACTACTGGATTAACTGTGGAAAATAAGGAACTCAAACTTCGGTTACAGGCTATGGAGCAGCAAGCACAGCTCCGGGATGCTCTGAGCGAAGCTTTGAAGGAAGAAGTTCAACGGCTTAGAATAGCAGCTGGCCAGGTTCCACCAATCAATGGAAATCCTTTCAACCGACCTCCTCAATATCCATCATCCCGGCCGCCTGTACACCATTTTAGTAGCTCCCATGCCCAGCAGGGTCAACAGCAGCCACCACCCATCTTGGCCACAAACCAGCAGCAATCAGATCCCAAATGGACGAACTCGTCCCAGCTCCTTGGTCGTAATCCTGATGGCCAAGCAAAACCTTAG | 1059 | 54.58 | MLMDPNFSAAKPPHPTAMDIEQMPENPHRGSYHRRSHSDTSFRFPNLDELLFFDPSELDLSILSSPTSPPPGGAAMAVDSSSNSKLSDDAVRPKPEPVNSGPFGGHLRSLSMDSDFFKNLDLGGDSGEIDSLGRKTPVSEQRPVRHRHSLSMDGSSSSFEADSTLVIDGVKKAMDPERLAELALIDPKRAKRILANRQSAARSKERKIRYTNELERKVQTLQSEATTLSAQVTMLQRDTTGLTVENKELKLRLQAMEQQAQLRDALSEALKEEVQRLRIAAGQVPPINGNPFNRPPQYPSSRPPVHHFSSSHAQQGQQQPPPILATNQQQSDPKWTNSSQLLGRNPDGQAKP | 352 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 32325539 | 32328849 | - | Maker00017591 | Lcy9g0965 | 642081 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy9g0965 | 352 | CDD | bZIP_plant_RF2 | 189 | 238 | IPR044759 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g0965 | 352 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 19 | 331 | - | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Lcy9g0965 | 352 | MobiDBLite | consensus disorder prediction | 281 | 352 | - | - | |
Lcy9g0965 | 352 | MobiDBLite | consensus disorder prediction | 303 | 345 | - | - | |
Lcy9g0965 | 352 | Pfam | Basic region leucine zipper | 186 | 237 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g0965 | 352 | SUPERFAMILY | Leucine zipper domain | 188 | 240 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g0965 | 352 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
Lcy9g0965 | 352 | Coils | Coil | 211 | 259 | - | - | |
Lcy9g0965 | 352 | MobiDBLite | consensus disorder prediction | 63 | 105 | - | - | |
Lcy9g0965 | 352 | FunFam | Transcription factor VIP1 | 187 | 240 | - | - | |
Lcy9g0965 | 352 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 186 | 249 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g0965 | 352 | Gene3D | - | 186 | 246 | - | - | |
Lcy9g0965 | 352 | SMART | brlzneu | 184 | 248 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g0965 | 352 | MobiDBLite | consensus disorder prediction | 127 | 158 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy3g0949 | Lcy-Chr3:32928711 | Lcy9g0965 | Lcy-Chr9:32325539 | 5.84E-37 | dispersed | |
Lcy4g0348 | Lcy-Chr4:4423904 | Lcy9g0965 | Lcy-Chr9:32325539 | 9.81E-40 | dispersed | |
Lcy7g1073 | Lcy-Chr7:11487583 | Lcy9g0965 | Lcy-Chr9:32325539 | 3.28E-51 | dispersed | |
Lcy8g1689 | Lcy-Chr8:43466071 | Lcy9g0965 | Lcy-Chr9:32325539 | 2.17E-41 | dispersed | |
Lcy9g0965 | Lcy-Chr9:32325539 | Lcy9g1335 | Lcy-Chr9:38118924 | 5.94E-09 | dispersed | |
Lcy4g0522 | Lcy-Chr4:6287019 | Lcy9g0965 | Lcy-Chr9:32325539 | 8.06E-10 | transposed | |
Lcy8g1404 | Lcy-Chr8:40691570 | Lcy9g0965 | Lcy-Chr9:32325539 | 4.76E-10 | transposed | |
Lcy10g1347 | Lcy-Chr10:36623456 | Lcy9g0965 | Lcy-Chr9:32325539 | 4.84E-105 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20633 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy9g0965 | K20557 | - | csv:101207973 | 626.32 |