Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g0967 ATGGACTCCGGAGGTGAAACAGGCCAGAGGGTCAGGCCAAGGTCAGAGGGATCGAGCCTTGGCCCAACCCAAATGGTCGGCCTCGGCCCGAGGGATCCCGAACTTTGTTCTCCAGACTCTCTTTTTACTCTTGTTCTCTTGCTTCCCATCGTTATGCTTGTTGACTTAAGCATCGGAGTCAGTGTGACAAGTACCACACCGGTGTGCAGCTCCCACAACCACGTAGTAGACGAAATCCAATCCCAACCCTTCGACTACTCCAAACGGGCCCAATGGCTACGCGCCGCCGTGCTCGGTGCCAACGACGGCCTCGTCTCCACTGCCTCTCTCATGATGGGCGTCGGCGCCGTCAAGCACGACGTCAAGGCCATGATCCTCACTGGCTTCGCAGGCCTCGTCGCCGGTGCCTGTAGCATGGCCATCGGTGAGTTTGTCTCCGTTTACTCTCAGTTGGATATAGAAATGGCCCAAATGAGAAGAAACAAGGATCATATCAAGGACTTGGAGGAGGAGAGAGAGAATCTGCCGAACCCTCTTCAGGCCGCGGCGGCTTCCGCGTTGGCCTTTTCCATGGGGGCAATGGTGCCGTTGCTGGCTGCGGCCTTTATAAAGGAGTATAGGGTTCGGCTCGGGGTGGTGGTGGCCGCGGTGACGATGGCTCTGATGGGGTTTGGGTGGCTGGGGGCGGCACTGGGGAAGGCACCAACGGTGAGGTCCGCTGTGAGGGTTTTGATCGGAGGGTGGGTGGCCATGGCTGTGACTTTTGGATTGACTAAGTTGATTGGTTCGAATGGTGAACCATGGAGTGAGCAGTTCGTTGATCGAGAAATAATGAAGGTGGAAATGCAGAGATTCTTCGATCTATCGATTGAAGAGAAGAAAAGGCTATGGCAGAGAGAAGGAGATATAGAAGGATGTGGCACTTTCGAGAATTTGTCTTTCGCCTTGTCGTCGGATTTTTGCAACCGCTGGAAGTTTTCATTCGGGGAATCCTGGCCGAGCAGCAAAATGGTGAAGGCGGAAAACGTTTGGAAGAGCACAAGGATGAAGAAAGCGATTCTCCACGTGGTGAATTTCGTGGCACCGATCGAACGTCATGATCAGTTGCCTTGGGTCGCCGATGACGCCGTTCGCAGTGCCGACAACGGTGGACGAGAACATCGAGCTCATCCAGAATTGGGTTGA 1185 54.6 MDSGGETGQRVRPRSEGSSLGPTQMVGLGPRDPELCSPDSLFTLVLLLPIVMLVDLSIGVSVTSTTPVCSSHNHVVDEIQSQPFDYSKRAQWLRAAVLGANDGLVSTASLMMGVGAVKHDVKAMILTGFAGLVAGACSMAIGEFVSVYSQLDIEMAQMRRNKDHIKDLEEERENLPNPLQAAAASALAFSMGAMVPLLAAAFIKEYRVRLGVVVAAVTMALMGFGWLGAALGKAPTVRSAVRVLIGGWVAMAVTFGLTKLIGSNGEPWSEQFVDREIMKVEMQRFFDLSIEEKKRLWQREGDIEGCGTFENLSFALSSDFCNRWKFSFGESWPSSKMVKAENVWKSTRMKKAILHVVNFVAPIERHDQLPWVADDAVRSADNGGREHRAHPELG 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 32416619 32420536 + Maker00017612 Lcy9g0967 642083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g0967 394 CDD Nodulin-21 91 235 - -
Lcy9g0967 394 Pfam VIT family 93 172 IPR008217 GO:0005384(InterPro)|GO:0030026(InterPro)
Lcy9g0967 394 Pfam VIT family 169 258 IPR008217 GO:0005384(InterPro)|GO:0030026(InterPro)
Lcy9g0967 394 MobiDBLite consensus disorder prediction 1 30 - -
Lcy9g0967 394 Coils Coil 151 171 - -
Lcy9g0967 394 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 67 262 IPR008217 GO:0005381(PANTHER)|GO:0005384(PANTHER)|GO:0005384(InterPro)|GO:0006880(PANTHER)|GO:0016020(PANTHER)|GO:0030026(PANTHER)|GO:0030026(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy9g0967 Lcy-Chr9:32416619 Lcy9g1409 Lcy-Chr9:39112182 3.95E-09 dispersed
Lcy13g1793 Lcy-Chr13:36909412 Lcy9g0967 Lcy-Chr9:32416619 3.98E-08 transposed
Lcy10g1348 Lcy-Chr10:36642003 Lcy9g0967 Lcy-Chr9:32416619 1.61E-81 wgd
Lcy3g0776 Lcy-Chr3:28131881 Lcy9g0967 Lcy-Chr9:32416619 2.45E-73 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g0967 K22736 - csv:101210510 314.309