Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g0968 ATGGGTCGAAAGAAGCCTACTGCACGGGATGATGACAGCGCCCCTGCGGCAGCTCAGGGTGGTGGGAAGTCGAAGAAAAAGACATTTGCAGTAGACGACGACGAGTACTCCATTGGTACTGAGTTGTCTGAAGAAGCCCCAGTTCAGGAGGAGAAGGTCGTGATAACTGGGAAAAAGAAGGGTAAGAAGGGCAACTCAAAAGCTTCACAAGTTAAAGAGGAGGAGGAGGATGACGAGGATGGTGTTTCAGAAATTGTTATCACCGGGAAGAAGAAGGGTAAGTCGAAGAAGGGTGGAAGTAGCAGTGCTTTTGCTGCTTCTAGTTTTGGTTTGCTTGAGGAGGAAGGAAATGATGGAGCTGATGATGATGATGATGAAGAATCTGTGTTAACTGCAGAAAAAGATGATGATGAAGGGGATGATTCTGCAATCAAGTTTTCAGGTAAGAAGAAGTCGTCAAAGTCTTCCAAGAAGAGTGGTTTTTCTGCAGTGTCAGCATTCAGTGCCCTTGATGACGAGAAAGATGAAGATGTAATTGATGATGAAATCAAAGTTGATGAGGAGATTGATGATGAGCCTGTTATTGCATTTACAGGTAAGAAGAAGTCATCAAAAGGTGGCAAGAAGGCTGGGAATGCATTTACAGGTTTTAGTGGTCTTAATTATGAGGATGAGGACAGAGATGATGATAAGGATGAGGATGAAGATGTTACAACGATTAGCTTCTCTGGTAAGAAAAAGAAGTCAGCTAAGGCTTCAAAGAAAAGTGGCAATTCGTTTAGTGCAGCATTCACCAGTGAGGATAATGATGGTGATATTTCTATTCCAGAGGCAAACAAATTAGACAATGATGGTGTTGATGAAGACGATGCCAATGTTATTGCATTTTCTGGCAAGAAAAAGTCCTCTAAGAAGAAAAGCAGCAGTACTTTTACTGCATTAAGTGATGAAAATGCACTGGGCAATGAAATTAGAGATGTAGTCGTACCTGAAATACTTAACACAGCAAGTAGCAATTTTGATTCTGATTTATCTAAAGCTAACAAGACGGAGGGGGTGGCAGAAACTTCTAAAAATAAAAAGAAAAAGAAGAAGAGTGGAAGGACCGCTCAAGAAGAAGATGATTTGGATAAGATTCTTGCTGAGCTAGGAGAGGGGCCTACTGTATCAAAACCAGCAGACCCTCCTCTTTCTTCACAAGAGGCCAAAGTTGAAAATCCACCTGAGCTTGTAGCTCCTCCTGATGCATCGGTTGAAAAGGAAGCTGAAGAAGAGAGCACAGAATCAGCTGCAGCAAGGAAGAAAAAAAAGAAGAAGGAGAAGGAAAAGGAAAAAAAGGCTGCAGCTGCAGCAGCTGCTGCTGCTGAAGGGAATGATGAGAAAATTGAGGAGGTAAAGACCGAAATTATAGAACCCAAAAAAGGTGCTGCAAAGAGTAAAGTGCCTGAGAAGAAAGTGCCAAAGCATGTTAGGGAGATGCAAGAGGCAATGGCTAGGAGAAAAGAAGAAGAAGAAAGAAGGAAAAGAGAAGAAGAAGAGAGATTAAGAAAGGAAGAAGAAGAGAGGCGTAGGCAAGAAGAACTTGAAAGGCAAGCTGAGGAGGCTAAGCGTAGGAAAAAGGAAAGAGAAAAAGAGAAGCTCCTAAAGAAGAAACAGGAAGGCAAGCTGTTAACGGGGAAACAAAAGGAAGAACAACGGAGGTTGGAGGCAATGAGGAACCAGATATTAGCAAGTGCGGGGGGTTTACCTCTGTCTACATCTGACCCTAGTGCACCAGCCAAACGACCTAAATACCAGACTAAGAAGACAAAACCAGCACATCACCAAACAAATGGTAGTGTGCAAACTAAGGTAGTGGAACATATAGAAGATAAAATACAAGAAAAAGATGTGGCAGAGACTGAAATATTGGAGTCTGAGAAGATTGAAGCTGTTGAGCCGATGCGCGTGGAAGAAAAATCAGATGTTATTGAGGCTACTGAAGATAAAGAAATTCAAGAAGACGAGGATGAGGATGAATGGGATGCAAAGAGTTGGGATGATGCTGTTGTTGATCTTTCCTTAAAAAGTTCTTTTGCTGATGAGGAGCTTGAATCCGAACCAGAGAATGGCATTAAAAAAGATAGAAAGAATGGTGCAACGACTTCACGTGATGCAGATGACAAGCCAACTGCTCCTGCCCAAAAAGGTTTACCTTCTCAGCCTATAAAATCTCAAGATATTGAAAACAAGAAGGTCGATGTCAACAAGGGCAAAAGAAAAGATGATGCTGTTAAGAAAAATGCTTCAATTCCAGATGCTGCTCCTAAACAACAGGAAGAAAATCTCCGCTCACCCATCTGTTGTATTATGGGCCATGTTGATACTGGTAAAACCAAGCTACTGGACTGTATTCGTGGTACAAATGTTCAAGAGGGAGAGGCAGGAGGAATTACTCAGCAGATTGGGGCAACATATTTTCCTGCCGAGAACATTCGTGAAAGAACTAGAGAATTGAAAGCTGATGCAAAGCTGAAGGTTCCTGGTCTACTTGTTATTGATACCCCTGGGCACGAATCGTTTACAAACTTACGTTCTCGTGGTTCTGGTTTATGTGATCTTGCAATTTTGGTTGTTGACATCATGCATGGCTTAGAGCCACAAACAATAGAATCTCTTAATCTCTTGAGGATGAGAAACACAGAATTTATTGTTGCTCTGAATAAGGTTGACAGACTTTATGGGTGGAAAACAATCCGTAATGCACCAATACTTAAGACAATGAAGCAGCAATCCAAGGATGTGCAGAATGAGTTCAATATGAGGCTTATTCAGATTATCACTCAATTTAAAGAGCAGGGATTGAATACCGAGCTGTATTATAAAAATAAAGAAATGGGGGAGACTTTCAGTATAGTACCTACAAGTGCTGTTACTGGTGAAGGTATTCCAGACATGTTATTATTATTGGTGCAATGGGCCCAGAAAACCATGACGAAGAAACTTACATATAGTGATGAAGTGCAGTGTACGGTCTTGGAGGTCAAGGTTGTTGAAGGCCATGGGACAACTATTGATGTCATATTGGGCCCAATTGTTACCACTATTCGAGCCCTATTGACGCCCCATCCAATGAAGGAACTCCGAGTGAAGGGAACATATCTGCATCATAAGGAAATCAAGGCTGCTCAGGGAATAAAAATAACTGGACAGGGTCTTGAGCATGCCATTGCTGGAACCAGTCTTCATGTGGTAGGTCCTGAGGATGACTTGGAAGACATTAAGGATTCAGCTATGGAAGATATGAATGTTTTCAAGGCGCAAGGCACACCTCGGGGCGATGAGCCCTTTGATCGCCCGAAGGCGAGAGGCGATAAAAAGGCGATGTCTGAGCACTCGCCTGGGCACTCTGTGAGGCGCACCCGGGCAAAATCGCCTCGCCCGTCGCCTGAGGCGTGCGCCCAGGTTGGCACACCAATTTGTATTCCTCAAAGAGAGTTTATTGACATTGGTCGCATTGCATCTATTGAAAATAATCACAAACCTGTTGATTATGCAAAGAAAGGGCAGAAGATTGCCATTAAGATAGTTGGGCACTCTTCGGAGGAACAGCAAAAGATGTATGGCAGGCATTTTGATTTGGAGGATGAACTTGTCAGCCATATATCAAGGAAGTCCATTGACCTACTCAAAGCCAACTATCGGGATGATTTATCCATCGAGGAATGGAGACTGTTGGTGAAATTGAAGAACCTTTTCAAGATACAATAA 3750 42.64 MGRKKPTARDDDSAPAAAQGGGKSKKKTFAVDDDEYSIGTELSEEAPVQEEKVVITGKKKGKKGNSKASQVKEEEEDDEDGVSEIVITGKKKGKSKKGGSSSAFAASSFGLLEEEGNDGADDDDDEESVLTAEKDDDEGDDSAIKFSGKKKSSKSSKKSGFSAVSAFSALDDEKDEDVIDDEIKVDEEIDDEPVIAFTGKKKSSKGGKKAGNAFTGFSGLNYEDEDRDDDKDEDEDVTTISFSGKKKKSAKASKKSGNSFSAAFTSEDNDGDISIPEANKLDNDGVDEDDANVIAFSGKKKSSKKKSSSTFTALSDENALGNEIRDVVVPEILNTASSNFDSDLSKANKTEGVAETSKNKKKKKKSGRTAQEEDDLDKILAELGEGPTVSKPADPPLSSQEAKVENPPELVAPPDASVEKEAEEESTESAAARKKKKKKEKEKEKKAAAAAAAAAEGNDEKIEEVKTEIIEPKKGAAKSKVPEKKVPKHVREMQEAMARRKEEEERRKREEEERLRKEEEERRRQEELERQAEEAKRRKKEREKEKLLKKKQEGKLLTGKQKEEQRRLEAMRNQILASAGGLPLSTSDPSAPAKRPKYQTKKTKPAHHQTNGSVQTKVVEHIEDKIQEKDVAETEILESEKIEAVEPMRVEEKSDVIEATEDKEIQEDEDEDEWDAKSWDDAVVDLSLKSSFADEELESEPENGIKKDRKNGATTSRDADDKPTAPAQKGLPSQPIKSQDIENKKVDVNKGKRKDDAVKKNASIPDAAPKQQEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKADAKLKVPGLLVIDTPGHESFTNLRSRGSGLCDLAILVVDIMHGLEPQTIESLNLLRMRNTEFIVALNKVDRLYGWKTIRNAPILKTMKQQSKDVQNEFNMRLIQIITQFKEQGLNTELYYKNKEMGETFSIVPTSAVTGEGIPDMLLLLVQWAQKTMTKKLTYSDEVQCTVLEVKVVEGHGTTIDVILGPIVTTIRALLTPHPMKELRVKGTYLHHKEIKAAQGIKITGQGLEHAIAGTSLHVVGPEDDLEDIKDSAMEDMNVFKAQGTPRGDEPFDRPKARGDKKAMSEHSPGHSVRRTRAKSPRPSPEACAQVGTPICIPQREFIDIGRIASIENNHKPVDYAKKGQKIAIKIVGHSSEEQQKMYGRHFDLEDELVSHISRKSIDLLKANYRDDLSIEEWRLLVKLKNLFKIQ 1249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 32453452 32472285 - Maker00017893 Lcy9g0968 642084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g0968 1249 Coils Coil 422 458 - -
Lcy9g0968 1249 MobiDBLite consensus disorder prediction 1 161 - -
Lcy9g0968 1249 MobiDBLite consensus disorder prediction 691 717 - -
Lcy9g0968 1249 NCBIfam small GTP-binding protein domain 781 906 IPR005225 GO:0005525(InterPro)
Lcy9g0968 1249 SUPERFAMILY Translation proteins 1148 1248 IPR009000 -
Lcy9g0968 1249 MobiDBLite consensus disorder prediction 416 435 - -
Lcy9g0968 1249 MobiDBLite consensus disorder prediction 115 137 - -
Lcy9g0968 1249 Gene3D Translation factors 1024 1102 - -
Lcy9g0968 1249 MobiDBLite consensus disorder prediction 337 352 - -
Lcy9g0968 1249 Gene3D - 770 996 IPR027417 -
Lcy9g0968 1249 MobiDBLite consensus disorder prediction 1099 1148 - -
Lcy9g0968 1249 Coils Coil 486 553 - -
Lcy9g0968 1249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 774 1050 IPR027417 -
Lcy9g0968 1249 MobiDBLite consensus disorder prediction 740 761 - -
Lcy9g0968 1249 MobiDBLite consensus disorder prediction 646 773 - -
Lcy9g0968 1249 MobiDBLite consensus disorder prediction 194 325 - -
Lcy9g0968 1249 MobiDBLite consensus disorder prediction 1105 1131 - -
Lcy9g0968 1249 MobiDBLite consensus disorder prediction 646 660 - -
Lcy9g0968 1249 FunFam Eukaryotic translation initiation factor 5B 770 998 - -
Lcy9g0968 1249 CDD IF2_eIF5B 779 989 - -
Lcy9g0968 1249 MobiDBLite consensus disorder prediction 457 570 - -
Lcy9g0968 1249 MobiDBLite consensus disorder prediction 337 617 - -
Lcy9g0968 1249 Gene3D Translation factors 997 1023 - -
Lcy9g0968 1249 MobiDBLite consensus disorder prediction 273 287 - -
Lcy9g0968 1249 MobiDBLite consensus disorder prediction 366 381 - -
Lcy9g0968 1249 CDD aeIF5B_II 1000 1093 - -
Lcy9g0968 1249 PRINTS GTP-binding elongation factor signature 844 854 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy9g0968 1249 PRINTS GTP-binding elongation factor signature 860 871 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy9g0968 1249 PRINTS GTP-binding elongation factor signature 780 793 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy9g0968 1249 PRINTS GTP-binding elongation factor signature 896 905 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy9g0968 1249 Pfam Elongation factor Tu GTP binding domain 779 988 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy9g0968 1249 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 776 992 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy9g0968 1249 MobiDBLite consensus disorder prediction 254 268 - -
Lcy9g0968 1249 MobiDBLite consensus disorder prediction 661 678 - -
Lcy9g0968 1249 Gene3D Translation factors 1143 1249 - -
Lcy9g0968 1249 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 1147 1248 IPR015760 GO:0003743(PANTHER)|GO:0005737(PANTHER)|GO:0005739(PANTHER)|GO:0006413(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy9g0968 Lcy-Chr9:32453452 Lcy9g1510 Lcy-Chr9:40171491 4.70E-20 dispersed
Lcy9g0968 Lcy-Chr9:32453452 Lcy6g1403 Lcy-Chr6:20750974 2.07E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g0968 K03243 - mdm:103444636 1026.16