Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g0974 ATGGAAGTCGACTCCGGCGAGGCGGTGGCGCCGCCAGCGGAAGCTGTGGAACCCCATGAAGTTAGCGGCGACGGCGGTGGAGGTGGCGGGTCGAATTCCGGTGAAGAAGATAAGGGGATGTTGCTGTTTGAAGATGGAGAGAAGAATTTTGGTGGGAACCGATGGCCTCGACAAGAGACTTTGGCTTTGTTGAAGATAAGATCCGATATGGATGCAGTTTTTAGAGATGCAACTCATAAAGCTCCATTGTGGGATGAAGTTTCAAGGAAGTTGGGAGAGCTCGGATTCAATCGAACTCCGAAGAAATGCAAGGAGAAATTTGAGAATGTTTACAAGTATCACAAAAGAACCAAAGAAGGTCGAAGTGGGAAATCCGATAATAGCAAAAAAGTTTATAGATTTTCTGATGAATTGCAGGCTTTTGATCATAGTCATAATCACAATAATCACATTTCATTTCAATCTCACCACCGCCAGCCGCCACTTCCGCCGCCGCCAGTCCCTCGGCCGACGACGCCGTTGCCGCCTTACAATCCCGTGGCGAAAACAATCACTTCTACTGTTCCATCGACCACGAACACTACAAACAACAACTCTTTGCCACCGAAATCTGTCAACCCTCTATCCAATTTGCCAAACATGGCTGCCAATGCGATGTTTTCGAGCTCCACGTCGTCGTCGACGGCGTCGGAGGAAGATCCGTTCCGGAGCAGGAGGAGGAGGAAGAAGAGGAAATGGAGCGATTTCTTCGTGAGGCTGACGAAAGAGGTGATAGAGAAGCGAGAGGGGCTTCAACTAAAGTTCTTAGAAGCCTTGGAGAGAATAGAGAATCAAAGGAAATTGAGAGACGAAGCATGGAGAATGAAAGAGATGACAAGGGTCAATCAAGAACACGAAGTTCTAGTCCAAGAAATGTCCATGGCCGCCGCGAAAGACGCGGCCGTCGTCGCATTTTTGCAAAAGATAGCCCCTTCTGCTGCTTCTCCACCGCCACCGCCACCGCCGCCGACGACTCAGGCGAAGAACAACGGCGAGAATGGAAAAGTGACCGTCCCCGCCGCCGTCATAGGAAGCCCTTCAAGATGGCCAAAGGCAGAAGTGGAAGCATTGATAAGGCTTAGAACAGAATTGGAAATGAAGTATCAAGAGAATGGGCCAAAAGGGTTGCTATGGGAAGAGATTTCAACAGCCATGAAAGGGCTTGGATACAATAGGAGCTCAAAGAGATGCAAAGAGAAATGGGAAAACATAAACAAATACTTCAAAAAGGTCAAAGACAGCAACAAGAAAAGGCCAGAAGATTCCAAGACATGTCCCTACTTTCACCAATTGGATGCCATATACAGAGAGAAAGAAAAAAACATGAGTTTTGATATCAATAGCCAAATGGAGCCATTGATGGTTGAACCAGAACAGCAATGGCCACCTCCATTTCAGGCCAATCAAATGATGGGAAATAATTTGCAAGGAAATCAAGAGGAACATGAAGAAGAAGAAGAGGAAGAAGAAGATGATGATGGAGGAAGTAGTAGCACAGATGTTGAAGATTGA 1551 47.0 MEVDSGEAVAPPAEAVEPHEVSGDGGGGGGSNSGEEDKGMLLFEDGEKNFGGNRWPRQETLALLKIRSDMDAVFRDATHKAPLWDEVSRKLGELGFNRTPKKCKEKFENVYKYHKRTKEGRSGKSDNSKKVYRFSDELQAFDHSHNHNNHISFQSHHRQPPLPPPPVPRPTTPLPPYNPVAKTITSTVPSTTNTTNNNSLPPKSVNPLSNLPNMAANAMFSSSTSSSTASEEDPFRSRRRRKKRKWSDFFVRLTKEVIEKREGLQLKFLEALERIENQRKLRDEAWRMKEMTRVNQEHEVLVQEMSMAAAKDAAVVAFLQKIAPSAASPPPPPPPPTTQAKNNGENGKVTVPAAVIGSPSRWPKAEVEALIRLRTELEMKYQENGPKGLLWEEISTAMKGLGYNRSSKRCKEKWENINKYFKKVKDSNKKRPEDSKTCPYFHQLDAIYREKEKNMSFDINSQMEPLMVEPEQQWPPPFQANQMMGNNLQGNQEEHEEEEEEEEDDDGGSSSTDVED 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 32578845 32581380 + Maker00017864 Lcy9g0974 642090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g0974 516 ProSiteProfiles Myb-like domain profile. 360 418 IPR001005 -
Lcy9g0974 516 MobiDBLite consensus disorder prediction 325 339 - -
Lcy9g0974 516 PANTHER FI21293P1 20 494 - -
Lcy9g0974 516 MobiDBLite consensus disorder prediction 220 241 - -
Lcy9g0974 516 MobiDBLite consensus disorder prediction 1 38 - -
Lcy9g0974 516 MobiDBLite consensus disorder prediction 493 516 - -
Lcy9g0974 516 MobiDBLite consensus disorder prediction 325 346 - -
Lcy9g0974 516 MobiDBLite consensus disorder prediction 147 172 - -
Lcy9g0974 516 Pfam Myb/SANT-like DNA-binding domain 360 447 IPR044822 -
Lcy9g0974 516 Pfam Myb/SANT-like DNA-binding domain 53 133 IPR044822 -
Lcy9g0974 516 FunFam Trihelix transcription factor GT-2 55 116 - -
Lcy9g0974 516 MobiDBLite consensus disorder prediction 469 516 - -
Lcy9g0974 516 SMART sant 358 420 IPR001005 -
Lcy9g0974 516 SMART sant 51 113 IPR001005 -
Lcy9g0974 516 Coils Coil 481 505 - -
Lcy9g0974 516 MobiDBLite consensus disorder prediction 158 172 - -
Lcy9g0974 516 CDD GT1 360 425 - -
Lcy9g0974 516 FunFam Trihelix transcription factor GT-2 362 423 - -
Lcy9g0974 516 ProSiteProfiles Myb-like domain profile. 47 111 IPR001005 -
Lcy9g0974 516 MobiDBLite consensus disorder prediction 475 490 - -
Lcy9g0974 516 CDD GT1 53 118 - -
Lcy9g0974 516 Gene3D - 55 116 - -
Lcy9g0974 516 Gene3D - 362 423 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy9g0974 Lcy-Chr9:32578845 Lcy9g0976 Lcy-Chr9:32660446 8.34E-114 proximal
Lcy13g1712 Lcy-Chr13:36080419 Lcy9g0974 Lcy-Chr9:32578845 5.48E-09 transposed
Lcy5g1384 Lcy-Chr5:33092409 Lcy9g0974 Lcy-Chr9:32578845 8.87E-33 wgd
Lcy8g0208 Lcy-Chr8:5319287 Lcy9g0974 Lcy-Chr9:32578845 2.95E-96 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20634 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g0974 - - - 0.0