Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy9g0974 | ATGGAAGTCGACTCCGGCGAGGCGGTGGCGCCGCCAGCGGAAGCTGTGGAACCCCATGAAGTTAGCGGCGACGGCGGTGGAGGTGGCGGGTCGAATTCCGGTGAAGAAGATAAGGGGATGTTGCTGTTTGAAGATGGAGAGAAGAATTTTGGTGGGAACCGATGGCCTCGACAAGAGACTTTGGCTTTGTTGAAGATAAGATCCGATATGGATGCAGTTTTTAGAGATGCAACTCATAAAGCTCCATTGTGGGATGAAGTTTCAAGGAAGTTGGGAGAGCTCGGATTCAATCGAACTCCGAAGAAATGCAAGGAGAAATTTGAGAATGTTTACAAGTATCACAAAAGAACCAAAGAAGGTCGAAGTGGGAAATCCGATAATAGCAAAAAAGTTTATAGATTTTCTGATGAATTGCAGGCTTTTGATCATAGTCATAATCACAATAATCACATTTCATTTCAATCTCACCACCGCCAGCCGCCACTTCCGCCGCCGCCAGTCCCTCGGCCGACGACGCCGTTGCCGCCTTACAATCCCGTGGCGAAAACAATCACTTCTACTGTTCCATCGACCACGAACACTACAAACAACAACTCTTTGCCACCGAAATCTGTCAACCCTCTATCCAATTTGCCAAACATGGCTGCCAATGCGATGTTTTCGAGCTCCACGTCGTCGTCGACGGCGTCGGAGGAAGATCCGTTCCGGAGCAGGAGGAGGAGGAAGAAGAGGAAATGGAGCGATTTCTTCGTGAGGCTGACGAAAGAGGTGATAGAGAAGCGAGAGGGGCTTCAACTAAAGTTCTTAGAAGCCTTGGAGAGAATAGAGAATCAAAGGAAATTGAGAGACGAAGCATGGAGAATGAAAGAGATGACAAGGGTCAATCAAGAACACGAAGTTCTAGTCCAAGAAATGTCCATGGCCGCCGCGAAAGACGCGGCCGTCGTCGCATTTTTGCAAAAGATAGCCCCTTCTGCTGCTTCTCCACCGCCACCGCCACCGCCGCCGACGACTCAGGCGAAGAACAACGGCGAGAATGGAAAAGTGACCGTCCCCGCCGCCGTCATAGGAAGCCCTTCAAGATGGCCAAAGGCAGAAGTGGAAGCATTGATAAGGCTTAGAACAGAATTGGAAATGAAGTATCAAGAGAATGGGCCAAAAGGGTTGCTATGGGAAGAGATTTCAACAGCCATGAAAGGGCTTGGATACAATAGGAGCTCAAAGAGATGCAAAGAGAAATGGGAAAACATAAACAAATACTTCAAAAAGGTCAAAGACAGCAACAAGAAAAGGCCAGAAGATTCCAAGACATGTCCCTACTTTCACCAATTGGATGCCATATACAGAGAGAAAGAAAAAAACATGAGTTTTGATATCAATAGCCAAATGGAGCCATTGATGGTTGAACCAGAACAGCAATGGCCACCTCCATTTCAGGCCAATCAAATGATGGGAAATAATTTGCAAGGAAATCAAGAGGAACATGAAGAAGAAGAAGAGGAAGAAGAAGATGATGATGGAGGAAGTAGTAGCACAGATGTTGAAGATTGA | 1551 | 47.0 | MEVDSGEAVAPPAEAVEPHEVSGDGGGGGGSNSGEEDKGMLLFEDGEKNFGGNRWPRQETLALLKIRSDMDAVFRDATHKAPLWDEVSRKLGELGFNRTPKKCKEKFENVYKYHKRTKEGRSGKSDNSKKVYRFSDELQAFDHSHNHNNHISFQSHHRQPPLPPPPVPRPTTPLPPYNPVAKTITSTVPSTTNTTNNNSLPPKSVNPLSNLPNMAANAMFSSSTSSSTASEEDPFRSRRRRKKRKWSDFFVRLTKEVIEKREGLQLKFLEALERIENQRKLRDEAWRMKEMTRVNQEHEVLVQEMSMAAAKDAAVVAFLQKIAPSAASPPPPPPPPTTQAKNNGENGKVTVPAAVIGSPSRWPKAEVEALIRLRTELEMKYQENGPKGLLWEEISTAMKGLGYNRSSKRCKEKWENINKYFKKVKDSNKKRPEDSKTCPYFHQLDAIYREKEKNMSFDINSQMEPLMVEPEQQWPPPFQANQMMGNNLQGNQEEHEEEEEEEEDDDGGSSSTDVED | 516 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 32578845 | 32581380 | + | Maker00017864 | Lcy9g0974 | 642090 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy9g0974 | 516 | ProSiteProfiles | Myb-like domain profile. | 360 | 418 | IPR001005 | - | |
Lcy9g0974 | 516 | MobiDBLite | consensus disorder prediction | 325 | 339 | - | - | |
Lcy9g0974 | 516 | PANTHER | FI21293P1 | 20 | 494 | - | - | |
Lcy9g0974 | 516 | MobiDBLite | consensus disorder prediction | 220 | 241 | - | - | |
Lcy9g0974 | 516 | MobiDBLite | consensus disorder prediction | 1 | 38 | - | - | |
Lcy9g0974 | 516 | MobiDBLite | consensus disorder prediction | 493 | 516 | - | - | |
Lcy9g0974 | 516 | MobiDBLite | consensus disorder prediction | 325 | 346 | - | - | |
Lcy9g0974 | 516 | MobiDBLite | consensus disorder prediction | 147 | 172 | - | - | |
Lcy9g0974 | 516 | Pfam | Myb/SANT-like DNA-binding domain | 360 | 447 | IPR044822 | - | |
Lcy9g0974 | 516 | Pfam | Myb/SANT-like DNA-binding domain | 53 | 133 | IPR044822 | - | |
Lcy9g0974 | 516 | FunFam | Trihelix transcription factor GT-2 | 55 | 116 | - | - | |
Lcy9g0974 | 516 | MobiDBLite | consensus disorder prediction | 469 | 516 | - | - | |
Lcy9g0974 | 516 | SMART | sant | 358 | 420 | IPR001005 | - | |
Lcy9g0974 | 516 | SMART | sant | 51 | 113 | IPR001005 | - | |
Lcy9g0974 | 516 | Coils | Coil | 481 | 505 | - | - | |
Lcy9g0974 | 516 | MobiDBLite | consensus disorder prediction | 158 | 172 | - | - | |
Lcy9g0974 | 516 | CDD | GT1 | 360 | 425 | - | - | |
Lcy9g0974 | 516 | FunFam | Trihelix transcription factor GT-2 | 362 | 423 | - | - | |
Lcy9g0974 | 516 | ProSiteProfiles | Myb-like domain profile. | 47 | 111 | IPR001005 | - | |
Lcy9g0974 | 516 | MobiDBLite | consensus disorder prediction | 475 | 490 | - | - | |
Lcy9g0974 | 516 | CDD | GT1 | 53 | 118 | - | - | |
Lcy9g0974 | 516 | Gene3D | - | 55 | 116 | - | - | |
Lcy9g0974 | 516 | Gene3D | - | 362 | 423 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy9g0974 | Lcy-Chr9:32578845 | Lcy9g0976 | Lcy-Chr9:32660446 | 8.34E-114 | proximal | |
Lcy13g1712 | Lcy-Chr13:36080419 | Lcy9g0974 | Lcy-Chr9:32578845 | 5.48E-09 | transposed | |
Lcy5g1384 | Lcy-Chr5:33092409 | Lcy9g0974 | Lcy-Chr9:32578845 | 8.87E-33 | wgd | |
Lcy8g0208 | Lcy-Chr8:5319287 | Lcy9g0974 | Lcy-Chr9:32578845 | 2.95E-96 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20634 | None | None | None | None | Lcy | TF |
Pathway information
