Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy9g0976 | ATGCTTGGCGACTCCACTACTTCCGTCTTGGGCGGCGGCGCCGGAGGGGATGCCGCCGCGTCGGAGACGCCTCACCCCCACGACGGGCTCATCGGAGACGTGGGGGACGGCGGGTCTGCGGCGGCGGAGGAGAATAATAACAATTCTGGTGAAGATGAGAGAGGGAGAAGCGGCGGAGGAGACGACGGCGACCGGAGCTTCGGCGGAAACCGGTGGCCGAGGCAAGAGACTTTGGCCCTCTTGAAAATACGCTCGGAAATGGACGTGGCTTTTCGAGATGCAAGCGTTAAAGGCCCTTTGTGGGAACAAGTTTCCAGGAAATTAGGGGAGCTTGGGTATCATCGAAGTGCAAAGAAATGCAAGGAGAAATTTGAGAATGTTTACAAATATCACAAAAGAACCAAAGAAGTTCGAAGTGGGAAACCGGATAGCAAAACTTATAAGTTTTTTGAACAATTAGAAGCTCTTGAAAATCACCCTCCTCTTAATTTCCACTCCCATTTGTCTAAACCACCACCTCCCCCACCTCCGGCAATGGCGGCTCCGCCACCAACCACCGTCATTTCTCACATTCCCTCAACTGTTCCATCGACCACCCCCGCCGTACCCCACTTGATGAACATATCATTCTCTCAACCAAACCCCACAATTCACCTCCAATCCCCGCCTCCTCCCTCTCCATTGCCATCGAATAACCCTACGAGCTTAACCGCCACCGCCGCCGTGCCTTTTCAAACCAATGTCTCTTCGACGGCGGCGGGAGTGGGGGTGGGGTTTCAGAGCATTGAAGCGGATCTCATCTCGAACTCGACATCTGATGATGTCGACTCATCGACATCATCAGACGAGGCGTCGAGGCGGAGGAGGAGGAAGAGGAAATGGAAGGACTTTTTTGAGAGGTTGATGAGGGAAGTGATTCAAAAGCAAGAGGAAATGCAAAAGAGATTCTTGGAAGCAATTGAGAAGAGGGAGCAAGAGAGAGTTGTGAGAGAAGAAACTTGGAGGATGCAAGAAATGGCCAAAATCAGTAGAGAAAGAGAGATTTTAGCTCAAGAAAGATCAATGGCGGCTGCTAAAGACGCCGCCATCACATCCTTCCTGCAAAAAATAACAGAATCCCACCAAAACAATAACAACAACCCGTCACAACCGTCGCCGCCACCGCCGCCACCGCAACAACAACAACCAATACCGATGTCGAATCCGACACCGGTCGTGCAACTGCCGCCGCCTCCACCACCACAAGCTTCCACATTGCAAGTAGTTGTTCCAAATTCCACCTCACAAAAAGTGGTGAACAATAGTGAGTTGTTGCAGCAAATGGAGATGATCAAAAGTGATCACAATGGTGGTGAAAATTATAGCATGAGCCCAGCTTCAAGCTCATCAAGATGGCCAAAAGTGGAAGTTCAAGCACTTATAAAATTGAGAACAAATCTTGAAGCCAAATATCAAGAGAATGGACCAAAAGGGCCATTGTGGGAAGAGATATCATCAGCAATGAAGAAACTTGGATACAATAGAAATGCAAAGAGGTGCAAAGAGAAATGGGAGAACATAAACAAGTACTTCAAGAAAGTGAAGGAGAGTAAAAAATCAAGGCCTGAGGATTCCAAGACTTGCCCTTATTTTCACCAGCTTGATGCTTTGTACAAGGAGAAGAACAACAACAGCAACAACAACAACGGCAACAAGTTCGAAAACATCATAATCGGATCTTCGACGCCGATTTTGCCGCATCAACAGCAGCCATTGATGGTTCGGCCCGAGCAACAATGGCCTCCGCAGCAAGATATTGCCCGCCCCGACTCGGGCAATGAGGAGATGGAGAGCGAACCGATGGATCGGGATGATAAAGACGACGACGATGACGAGGAAGATGATGAGGAAGAGGACGAGGGTGGCGGGAACTATGAGATTGTGGCAAGCAAACCGGCTTCAGTGAGTGCTGCAGAGTGA | 1959 | 49.62 | MLGDSTTSVLGGGAGGDAAASETPHPHDGLIGDVGDGGSAAAEENNNNSGEDERGRSGGGDDGDRSFGGNRWPRQETLALLKIRSEMDVAFRDASVKGPLWEQVSRKLGELGYHRSAKKCKEKFENVYKYHKRTKEVRSGKPDSKTYKFFEQLEALENHPPLNFHSHLSKPPPPPPPAMAAPPPTTVISHIPSTVPSTTPAVPHLMNISFSQPNPTIHLQSPPPPSPLPSNNPTSLTATAAVPFQTNVSSTAAGVGVGFQSIEADLISNSTSDDVDSSTSSDEASRRRRRKRKWKDFFERLMREVIQKQEEMQKRFLEAIEKREQERVVREETWRMQEMAKISREREILAQERSMAAAKDAAITSFLQKITESHQNNNNNPSQPSPPPPPPQQQQPIPMSNPTPVVQLPPPPPPQASTLQVVVPNSTSQKVVNNSELLQQMEMIKSDHNGGENYSMSPASSSSRWPKVEVQALIKLRTNLEAKYQENGPKGPLWEEISSAMKKLGYNRNAKRCKEKWENINKYFKKVKESKKSRPEDSKTCPYFHQLDALYKEKNNNSNNNNGNKFENIIIGSSTPILPHQQQPLMVRPEQQWPPQQDIARPDSGNEEMESEPMDRDDKDDDDDEEDDEEEDEGGGNYEIVASKPASVSAAE | 652 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 32660446 | 32663723 | - | Maker00017635 | Lcy9g0976 | 642092 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy9g0976 | 652 | SMART | sant | 68 | 130 | IPR001005 | - | |
| Lcy9g0976 | 652 | SMART | sant | 461 | 523 | IPR001005 | - | |
| Lcy9g0976 | 652 | Gene3D | - | 465 | 526 | - | - | |
| Lcy9g0976 | 652 | Gene3D | - | 72 | 133 | - | - | |
| Lcy9g0976 | 652 | MobiDBLite | consensus disorder prediction | 373 | 419 | - | - | |
| Lcy9g0976 | 652 | MobiDBLite | consensus disorder prediction | 610 | 636 | - | - | |
| Lcy9g0976 | 652 | ProSiteProfiles | Myb-like domain profile. | 457 | 521 | IPR001005 | - | |
| Lcy9g0976 | 652 | MobiDBLite | consensus disorder prediction | 209 | 236 | - | - | |
| Lcy9g0976 | 652 | MobiDBLite | consensus disorder prediction | 47 | 61 | - | - | |
| Lcy9g0976 | 652 | MobiDBLite | consensus disorder prediction | 269 | 291 | - | - | |
| Lcy9g0976 | 652 | CDD | GT1 | 464 | 528 | - | - | |
| Lcy9g0976 | 652 | FunFam | Trihelix transcription factor GT-2 | 465 | 526 | - | - | |
| Lcy9g0976 | 652 | MobiDBLite | consensus disorder prediction | 217 | 231 | - | - | |
| Lcy9g0976 | 652 | MobiDBLite | consensus disorder prediction | 1 | 73 | - | - | |
| Lcy9g0976 | 652 | MobiDBLite | consensus disorder prediction | 161 | 182 | - | - | |
| Lcy9g0976 | 652 | Pfam | Myb/SANT-like DNA-binding domain | 463 | 550 | IPR044822 | - | |
| Lcy9g0976 | 652 | Pfam | Myb/SANT-like DNA-binding domain | 70 | 156 | IPR044822 | - | |
| Lcy9g0976 | 652 | MobiDBLite | consensus disorder prediction | 381 | 418 | - | - | |
| Lcy9g0976 | 652 | CDD | GT1 | 70 | 135 | - | - | |
| Lcy9g0976 | 652 | MobiDBLite | consensus disorder prediction | 166 | 182 | - | - | |
| Lcy9g0976 | 652 | Coils | Coil | 306 | 326 | - | - | |
| Lcy9g0976 | 652 | ProSiteProfiles | Myb-like domain profile. | 70 | 128 | IPR001005 | - | |
| Lcy9g0976 | 652 | MobiDBLite | consensus disorder prediction | 589 | 652 | - | - | |
| Lcy9g0976 | 652 | PANTHER | FI21293P1 | 44 | 620 | - | - | |
| Lcy9g0976 | 652 | FunFam | Trihelix transcription factor GT-2 | 72 | 133 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy12g1454 | Lcy-Chr12:33138834 | Lcy9g0976 | Lcy-Chr9:32660446 | 5.64E-100 | dispersed | |
| Lcy2g1699 | Lcy-Chr2:25663370 | Lcy9g0976 | Lcy-Chr9:32660446 | 2.58E-32 | dispersed | |
| Lcy5g1384 | Lcy-Chr5:33092409 | Lcy9g0976 | Lcy-Chr9:32660446 | 1.22E-34 | dispersed | |
| Lcy7g0591 | Lcy-Chr7:5298454 | Lcy9g0976 | Lcy-Chr9:32660446 | 2.64E-27 | dispersed | |
| Lcy7g0594 | Lcy-Chr7:5325377 | Lcy9g0976 | Lcy-Chr9:32660446 | 2.64E-27 | dispersed | |
| Lcy8g0208 | Lcy-Chr8:5319287 | Lcy9g0976 | Lcy-Chr9:32660446 | 2.25E-101 | dispersed | |
| Lcy9g0974 | Lcy-Chr9:32578845 | Lcy9g0976 | Lcy-Chr9:32660446 | 8.34E-114 | proximal |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 20635 | None | None | None | None | Lcy | TF |
Pathway information