Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy9g0979 | ATGTTCATGAGTCCGACACAGACATGCGAGTTTTTGGTTTCTGGGTTTTCAAACCCATCTTCAGATTCCTCTATTTTCTTCATATTCAGGCTTGGATTTTGCCCACCTTCAATCGCTGATTCATATCCTTGGAATTCATGTTCTGTTTGCTTGAATGGTTTGTGGGTGTCTGAAATTGTGTTAAGCTTTGATGGTGGCCTTGTGGCACATCGAGTGATGTCATTTCGCAATATAGTCCGTGACGTTAGAGAGGGGTTTGGAAGTTTATCTAGGCGTAGTTTTGAGGTGAGACTACCTGGACACCACCGAGGTAAATCTCATGGATCAGTCCATGATCTGCACGACCAACCTCTAGTAATTCAGACCAGCCGTTGGGCTAGCCTCCCACCTGAGCTATTGCGAGATGTAGTCATGAGATTGGAGGAGAGTGAGAGCGTGTGGCCTGCACGCAGGAATGTTGTTGCTTGTGCTGCTGTTTGTAGGTCGTGGAGGGAAATGTGCAAAGAGATAGTAAAAAGTCCTGAGTTCTCTGGGAAAATTACCTTCCCTGTGTCCTTAAAGCAGCCAGGGACTCGCGATGGTATTCAGTGCTTCATTAAGAGGGACAAATCTAATTTGACTTACCACCTTTACCTTTGCCTTAGTCCTGGTAAGCTCCTCTTTCATGGTTGTTGCATCTCAGCTTTACTTGTTGACAATGGGAAGTTTCTTCTTTCTGCAAAAAGAACGAGGAGAACGACTTGCACTGAGTACGTGATCTCCATGGATGCTGATAATATATCGAGATCGAGCAACACTTACATTGGAAAACTAAGGTCAAATTTTCTAGGGACCAAGTTCATTATCTATGATACACAGCCTCCGTACAACAATGCCCAGATTTCCCCACCTGGCCGAAGTCGTAGATTCTACTCGAAAAAAGTTTCTCCAAAGGTCCCAACTGGTAGCTACGACATTGCTCAAGTCTCCTATGAGCTGAACGTTCTTGGCACAAGAGGCCCCCGAAAGATGCACTGCACGATGCACTCCATCCCCGCCTCGTCCCTTGAGCCCGGTGGCACTGTTCCAGGCCAGCCCGAGGTTGTCACTCGACTCCTGGGGGATTCGTTCCGAAGTATATCATTCTCGAAGTCTGTCTTCAGTTCCACAGAGTTCAGTAGTTCCCGCTTCTCTGATATTGTTGGTTCACGGGATGAAGATGAAGTGGGGAAGGAGAGACCATTGGTTCTTCGGAACAAGCCACCACGGTGGCACGAGCAGTTGCAGTGTTGGTGTCTTAATTTCAGGGGACGAGTAACCGTTGCCTCTGTCAAAAACTTTCAACTGATAGCTGCAACAGAGCCTTCTTCCACAGCTACAAACCAATCACAGCCAAACCAACACGCCCAATCTTCCCAATCCGACCATGACAAGATCATTCTTCAGTTCGGGAAGGTCGGGAAGGACATGTTTACGATGGATTACCGATATCCATTGTCAGCATTTCAAGCTTTTGCAATCTGTTTGAGTAGCTTCGACACCAAATTGGCTTGTGAATAG | 1539 | 46.78 | MFMSPTQTCEFLVSGFSNPSSDSSIFFIFRLGFCPPSIADSYPWNSCSVCLNGLWVSEIVLSFDGGLVAHRVMSFRNIVRDVREGFGSLSRRSFEVRLPGHHRGKSHGSVHDLHDQPLVIQTSRWASLPPELLRDVVMRLEESESVWPARRNVVACAAVCRSWREMCKEIVKSPEFSGKITFPVSLKQPGTRDGIQCFIKRDKSNLTYHLYLCLSPGKLLFHGCCISALLVDNGKFLLSAKRTRRTTCTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYNNAQISPPGRSRRFYSKKVSPKVPTGSYDIAQVSYELNVLGTRGPRKMHCTMHSIPASSLEPGGTVPGQPEVVTRLLGDSFRSISFSKSVFSSTEFSSSRFSDIVGSRDEDEVGKERPLVLRNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATEPSSTATNQSQPNQHAQSSQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE | 512 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 32733901 | 32739228 | + | Maker00017812 | Lcy9g0979 | 642095 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy9g0979 | 512 | FunFam | Tubby-like F-box protein | 120 | 173 | - | - | |
Lcy9g0979 | 512 | Gene3D | Tubby Protein; Chain A | 185 | 506 | IPR025659 | - | |
Lcy9g0979 | 512 | SUPERFAMILY | F-box domain | 121 | 168 | IPR036047 | GO:0005515(InterPro) | |
Lcy9g0979 | 512 | Pfam | Tub family | 186 | 507 | IPR000007 | - | |
Lcy9g0979 | 512 | PRINTS | Tubby superfamily signature | 469 | 488 | IPR000007 | - | |
Lcy9g0979 | 512 | PRINTS | Tubby superfamily signature | 490 | 512 | IPR000007 | - | |
Lcy9g0979 | 512 | PRINTS | Tubby superfamily signature | 410 | 427 | IPR000007 | - | |
Lcy9g0979 | 512 | PRINTS | Tubby superfamily signature | 267 | 291 | IPR000007 | - | |
Lcy9g0979 | 512 | PRINTS | Tubby superfamily signature | 316 | 343 | IPR000007 | - | |
Lcy9g0979 | 512 | PRINTS | Tubby superfamily signature | 251 | 267 | IPR000007 | - | |
Lcy9g0979 | 512 | PRINTS | Tubby superfamily signature | 428 | 444 | IPR000007 | - | |
Lcy9g0979 | 512 | PANTHER | TUBBY-RELATED | 119 | 511 | - | - | |
Lcy9g0979 | 512 | ProSitePatterns | Tub family signature 2. | 497 | 512 | IPR018066 | - | |
Lcy9g0979 | 512 | ProSitePatterns | Tub family signature 1. | 428 | 441 | IPR018066 | - | |
Lcy9g0979 | 512 | SUPERFAMILY | Tubby C-terminal domain-like | 174 | 512 | IPR025659 | - | |
Lcy9g0979 | 512 | Pfam | F-box-like | 125 | 168 | IPR001810 | GO:0005515(InterPro) | |
Lcy9g0979 | 512 | Gene3D | - | 120 | 173 | - | - | |
Lcy9g0979 | 512 | CDD | F-box_AtTLP-like | 125 | 169 | - | - | |
Lcy9g0979 | 512 | MobiDBLite | consensus disorder prediction | 448 | 468 | - | - | |
Lcy9g0979 | 512 | FunFam | Tubby-like F-box protein | 182 | 512 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy6g0535 | Lcy-Chr6:5008947 | Lcy9g0979 | Lcy-Chr9:32733901 | 1.11E-230 | dispersed | |
Lcy6g0905 | Lcy-Chr6:9221119 | Lcy9g0979 | Lcy-Chr9:32733901 | 1.79E-144 | dispersed | |
Lcy9g0979 | Lcy-Chr9:32733901 | Lcy9g2212 | Lcy-Chr9:46712159 | 4.78E-143 | dispersed | |
Lcy10g1353 | Lcy-Chr10:36683909 | Lcy9g0979 | Lcy-Chr9:32733901 | 1.20E-247 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20637 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy9g0979 | K19600 | - | csv:101206041 | 801.201 |