Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g0979 ATGTTCATGAGTCCGACACAGACATGCGAGTTTTTGGTTTCTGGGTTTTCAAACCCATCTTCAGATTCCTCTATTTTCTTCATATTCAGGCTTGGATTTTGCCCACCTTCAATCGCTGATTCATATCCTTGGAATTCATGTTCTGTTTGCTTGAATGGTTTGTGGGTGTCTGAAATTGTGTTAAGCTTTGATGGTGGCCTTGTGGCACATCGAGTGATGTCATTTCGCAATATAGTCCGTGACGTTAGAGAGGGGTTTGGAAGTTTATCTAGGCGTAGTTTTGAGGTGAGACTACCTGGACACCACCGAGGTAAATCTCATGGATCAGTCCATGATCTGCACGACCAACCTCTAGTAATTCAGACCAGCCGTTGGGCTAGCCTCCCACCTGAGCTATTGCGAGATGTAGTCATGAGATTGGAGGAGAGTGAGAGCGTGTGGCCTGCACGCAGGAATGTTGTTGCTTGTGCTGCTGTTTGTAGGTCGTGGAGGGAAATGTGCAAAGAGATAGTAAAAAGTCCTGAGTTCTCTGGGAAAATTACCTTCCCTGTGTCCTTAAAGCAGCCAGGGACTCGCGATGGTATTCAGTGCTTCATTAAGAGGGACAAATCTAATTTGACTTACCACCTTTACCTTTGCCTTAGTCCTGGTAAGCTCCTCTTTCATGGTTGTTGCATCTCAGCTTTACTTGTTGACAATGGGAAGTTTCTTCTTTCTGCAAAAAGAACGAGGAGAACGACTTGCACTGAGTACGTGATCTCCATGGATGCTGATAATATATCGAGATCGAGCAACACTTACATTGGAAAACTAAGGTCAAATTTTCTAGGGACCAAGTTCATTATCTATGATACACAGCCTCCGTACAACAATGCCCAGATTTCCCCACCTGGCCGAAGTCGTAGATTCTACTCGAAAAAAGTTTCTCCAAAGGTCCCAACTGGTAGCTACGACATTGCTCAAGTCTCCTATGAGCTGAACGTTCTTGGCACAAGAGGCCCCCGAAAGATGCACTGCACGATGCACTCCATCCCCGCCTCGTCCCTTGAGCCCGGTGGCACTGTTCCAGGCCAGCCCGAGGTTGTCACTCGACTCCTGGGGGATTCGTTCCGAAGTATATCATTCTCGAAGTCTGTCTTCAGTTCCACAGAGTTCAGTAGTTCCCGCTTCTCTGATATTGTTGGTTCACGGGATGAAGATGAAGTGGGGAAGGAGAGACCATTGGTTCTTCGGAACAAGCCACCACGGTGGCACGAGCAGTTGCAGTGTTGGTGTCTTAATTTCAGGGGACGAGTAACCGTTGCCTCTGTCAAAAACTTTCAACTGATAGCTGCAACAGAGCCTTCTTCCACAGCTACAAACCAATCACAGCCAAACCAACACGCCCAATCTTCCCAATCCGACCATGACAAGATCATTCTTCAGTTCGGGAAGGTCGGGAAGGACATGTTTACGATGGATTACCGATATCCATTGTCAGCATTTCAAGCTTTTGCAATCTGTTTGAGTAGCTTCGACACCAAATTGGCTTGTGAATAG 1539 46.78 MFMSPTQTCEFLVSGFSNPSSDSSIFFIFRLGFCPPSIADSYPWNSCSVCLNGLWVSEIVLSFDGGLVAHRVMSFRNIVRDVREGFGSLSRRSFEVRLPGHHRGKSHGSVHDLHDQPLVIQTSRWASLPPELLRDVVMRLEESESVWPARRNVVACAAVCRSWREMCKEIVKSPEFSGKITFPVSLKQPGTRDGIQCFIKRDKSNLTYHLYLCLSPGKLLFHGCCISALLVDNGKFLLSAKRTRRTTCTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYNNAQISPPGRSRRFYSKKVSPKVPTGSYDIAQVSYELNVLGTRGPRKMHCTMHSIPASSLEPGGTVPGQPEVVTRLLGDSFRSISFSKSVFSSTEFSSSRFSDIVGSRDEDEVGKERPLVLRNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATEPSSTATNQSQPNQHAQSSQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 32733901 32739228 + Maker00017812 Lcy9g0979 642095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g0979 512 FunFam Tubby-like F-box protein 120 173 - -
Lcy9g0979 512 Gene3D Tubby Protein; Chain A 185 506 IPR025659 -
Lcy9g0979 512 SUPERFAMILY F-box domain 121 168 IPR036047 GO:0005515(InterPro)
Lcy9g0979 512 Pfam Tub family 186 507 IPR000007 -
Lcy9g0979 512 PRINTS Tubby superfamily signature 469 488 IPR000007 -
Lcy9g0979 512 PRINTS Tubby superfamily signature 490 512 IPR000007 -
Lcy9g0979 512 PRINTS Tubby superfamily signature 410 427 IPR000007 -
Lcy9g0979 512 PRINTS Tubby superfamily signature 267 291 IPR000007 -
Lcy9g0979 512 PRINTS Tubby superfamily signature 316 343 IPR000007 -
Lcy9g0979 512 PRINTS Tubby superfamily signature 251 267 IPR000007 -
Lcy9g0979 512 PRINTS Tubby superfamily signature 428 444 IPR000007 -
Lcy9g0979 512 PANTHER TUBBY-RELATED 119 511 - -
Lcy9g0979 512 ProSitePatterns Tub family signature 2. 497 512 IPR018066 -
Lcy9g0979 512 ProSitePatterns Tub family signature 1. 428 441 IPR018066 -
Lcy9g0979 512 SUPERFAMILY Tubby C-terminal domain-like 174 512 IPR025659 -
Lcy9g0979 512 Pfam F-box-like 125 168 IPR001810 GO:0005515(InterPro)
Lcy9g0979 512 Gene3D - 120 173 - -
Lcy9g0979 512 CDD F-box_AtTLP-like 125 169 - -
Lcy9g0979 512 MobiDBLite consensus disorder prediction 448 468 - -
Lcy9g0979 512 FunFam Tubby-like F-box protein 182 512 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0535 Lcy-Chr6:5008947 Lcy9g0979 Lcy-Chr9:32733901 1.11E-230 dispersed
Lcy6g0905 Lcy-Chr6:9221119 Lcy9g0979 Lcy-Chr9:32733901 1.79E-144 dispersed
Lcy9g0979 Lcy-Chr9:32733901 Lcy9g2212 Lcy-Chr9:46712159 4.78E-143 dispersed
Lcy10g1353 Lcy-Chr10:36683909 Lcy9g0979 Lcy-Chr9:32733901 1.20E-247 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20637 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g0979 K19600 - csv:101206041 801.201