Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1020 TATGATCTTTTGCAAATTGATGAGCTTTGGCATGTTGTTGGTGCAGCTGTGGCAATGGAGTCCCTGAAAAGTGAATGGCAAAATACTCCACCAAGCTGGGGAACATCAAATGATCCATGTGGAACTCCCAGTTGGGAAGGAGTGACTTGCATCAATTCAAGAGTAACTCAACTGAGACTATCAACTATGGGCCTAAAAGGTCAACTTGGTGGTGACATTGGAGGCCTCACTGAACTCACATCTTTGGACCTTTCCTTCAATAAAGATCTCACTGGTTCAATCTCTCCAGCATTGGGGAATCTACAGAATTTGACTATCTTGGCTTTAAATTCCAATAATTTCACTGGTACCATACCACCATCTCTGGGAAAACTCTCCAAACTCTATTGGCTGGACCTTGCAGATAATCAATTGACAGGTGGTCTCCCAGTCTCCACTTCTGAATCTCCTGGTTTGGATCTCCTTCACAAGGCTAAACATTTTCATTTCAACAAAAACAGGTTATCAGATTATTTGATGGAAATAAATTTTCTGGGAGTATCCCAGAAACATTGGGACTTGTTAAGACCCTGGAGGTTCTGTGAGTACAAGGACATTAGTAACAATTCATTTGATTCATCAGAAGCTCCAGAATGGTTCTCAAATCTAAAACTTCTTACCACTCTGATTGTTGAATATGGGTCAATACAAGGATCTGTGCCACCAGGAGTCTTCGGCTTACCACAAATCCAACAAATGCTGATAGGCAATCCAGTGTGTGACACAGATCAAACCATCTCAAATTCAATCTACTGCAAGCTTAAAAGCCAGCCAATGCAACCCTATTCTACAGACCTTGCCCACTGTGGACCTAAGTCATGTGCTCCCAATGAGAAGCTAAACCCTCAGAGTTGTCAATGTGCCCATCCATTTGAAGGGGATTTATACTTCAGAGCTCCTTCGTTCAGAGAATTGTCCAATGCAACTCTGTTTCAGTCATTGGAAACTAGCCTTTGGCAAAAACTGGGCCTTACCAATGGCTCAGTTTCTCTTCAAAACCTTGCCTTCAATGCTGACGATCATCTTGAGATGGACCTTGCACTTTTTCCACCCAATGGAATCAACTATTTCAACAGGTCAGAAATTCAGAGGCTTGGGTTTTACTTGAGCAATCAAACTTACAAACCTCCACCAATCTTTGGGCCATTTTATTTCATTGCTTCTTCCTATGATTTTGAAGCATTAATGCCTCAAGTCACGACCAAGGGGACTTCAATTAGCCCTGGAGTGATAATTGGGGTAGCTATTGGTTGTGGTTTTCTAATTCTAGGCCTCATTGGAGTTGGAATATATGCAATTCGGCAAAAGATACGTGCAAAAAAGGCCATGAGATTGAGTCGGCCATTTGCTTCTTGGCCACCAAGTGGAAACAATAATAGTGGAAGTGCACCAAAATTGAAAGGAGCTAGATGGTTTTCTTACGATGAAGTTAAAAAATGCACAAATAATTTCTCCACAAGCAATGAGATAGGATCTGGAGGATATGGCAAGGTATACAGAGGAATTCTTGGTGATGGACAGATAGTTGCGATCAAGAGAGCTCAGCAAGGATCGATGCAGGGTGGGCTCGAGTTCAAAACAGAAATCGAACTGCTTTCACGAGTTCATCACAAGAACCTTCTTGGCCTTGTGGGATTTTGTTTTGATCAAGGACAATACATGCTTGTTTATGAGTTCATGCCTAATGGAACACTCAGAGATAGCCTATCAGGAAAATCTGGTATTAGTCTTGATTGGAAGAGAAGACTTCGCATTGCACTTGAGTCTGCTAGAGGATTGACTTATTTACATGAACTTGCTAATCCTCCCATAATCCATAGAGACATTAAGTCCACCAACATTCTATTGGATGAACATTTAAATGCAAAAGTTGCAGATTTTGGCTTGTCTAAACTTGTCTCAGACAGTGAAAAGGGACATGTGTCTACTCAAGTCAAAGGAACAATGGGTTATTTGGATCCTGAATATTATATGACTCAACAATTGACTGAGAAAAGCGATGTATATAGTTTTGGAGTACTTATGCTGGAATTACTAACTGCCAAGCTACCTATCGAGAAAGGAAAGCATATAGTTCGTGAGGTGCGTATGTTGATGAATAGGAATGAAGGAGAATATTATGGTCTAAAGAAGATAATGGATGCAACCATAATAAACAATAGCACAGCTATTAAGGGATTTGGAAGGTTCTTGGAGTTGGCCATGCAATGTGTTGAAGAATCAGCTGTAGAACGTCCCACAATGAGTGAAGTGGTCAAAGAAATTGAGAGTATTTTGAAGAATCATGGAATGAATACGAACCCAACATCTGCATCCTCATCTGCAACTGACTTTGGTAGTTCCAAAATCACTCCTAGACATCCCTATAATGATCCTATACCAAAAAAGGACACTAATGATAGTAATAATGCTTTTGATTACAGTGGTGAGTACACTCTTTGA 2481 40.63 YDLLQIDELWHVVGAAVAMESLKSEWQNTPPSWGTSNDPCGTPSWEGVTCINSRVTQLRLSTMGLKGQLGGDIGGLTELTSLDLSFNKDLTGSISPALGNLQNLTILALNSNNFTGTIPPSLGKLSKLYWLDLADNQLTGGLPVSTSESPGLDLLHKAKHFHFNKNRLSDYLMEINFLGVSQKHWDLLRPWRFCEYKDISNNSFDSSEAPEWFSNLKLLTTLIVEYGSIQGSVPPGVFGLPQIQQMLIGNPVCDTDQTISNSIYCKLKSQPMQPYSTDLAHCGPKSCAPNEKLNPQSCQCAHPFEGDLYFRAPSFRELSNATLFQSLETSLWQKLGLTNGSVSLQNLAFNADDHLEMDLALFPPNGINYFNRSEIQRLGFYLSNQTYKPPPIFGPFYFIASSYDFEALMPQVTTKGTSISPGVIIGVAIGCGFLILGLIGVGIYAIRQKIRAKKAMRLSRPFASWPPSGNNNSGSAPKLKGARWFSYDEVKKCTNNFSTSNEIGSGGYGKVYRGILGDGQIVAIKRAQQGSMQGGLEFKTEIELLSRVHHKNLLGLVGFCFDQGQYMLVYEFMPNGTLRDSLSGKSGISLDWKRRLRIALESARGLTYLHELANPPIIHRDIKSTNILLDEHLNAKVADFGLSKLVSDSEKGHVSTQVKGTMGYLDPEYYMTQQLTEKSDVYSFGVLMLELLTAKLPIEKGKHIVREVRMLMNRNEGEYYGLKKIMDATIINNSTAIKGFGRFLELAMQCVEESAVERPTMSEVVKEIESILKNHGMNTNPTSASSSATDFGSSKITPRHPYNDPIPKKDTNDSNNAFDYSGEYTL 826
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 33629571 33638409 + Maker00017732 Lcy9g1020 642136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1020 826 CDD STKc_IRAK 503 771 - -
Lcy9g1020 826 MobiDBLite consensus disorder prediction 808 826 - -
Lcy9g1020 826 ProSitePatterns Protein kinases ATP-binding region signature. 503 525 IPR017441 GO:0005524(InterPro)
Lcy9g1020 826 PANTHER RECEPTOR-LIKE PROTEIN 55 31 174 - -
Lcy9g1020 826 Pfam Protein tyrosine and serine/threonine kinase 499 767 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g1020 826 Pfam Leucine rich repeat 78 138 IPR001611 GO:0005515(InterPro)
Lcy9g1020 826 Gene3D Ribonuclease Inhibitor 16 184 IPR032675 -
Lcy9g1020 826 FunFam Leucine-rich repeat family protein 15 176 - -
Lcy9g1020 826 Gene3D Transferase(Phosphotransferase) domain 1 573 800 - -
Lcy9g1020 826 SUPERFAMILY L domain-like 27 250 - -
Lcy9g1020 826 SUPERFAMILY Protein kinase-like (PK-like) 483 787 IPR011009 -
Lcy9g1020 826 ProSitePatterns Serine/Threonine protein kinases active-site signature. 617 629 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g1020 826 Gene3D Phosphorylase Kinase; domain 1 469 572 - -
Lcy9g1020 826 MobiDBLite consensus disorder prediction 775 796 - -
Lcy9g1020 826 SMART serkin_6 497 772 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1020 826 MobiDBLite consensus disorder prediction 775 826 - -
Lcy9g1020 826 FunFam Leucine-rich repeat protein kinase family protein 467 572 - -
Lcy9g1020 826 Pfam Leucine rich repeat N-terminal domain 21 50 IPR013210 -
Lcy9g1020 826 ProSiteProfiles Protein kinase domain profile. 497 772 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1020 826 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 573 785 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1981 Lcy-Chr11:43408198 Lcy9g1020 Lcy-Chr9:33629571 4.37E-73 dispersed
Lcy5g0015 Lcy-Chr5:386987 Lcy9g1020 Lcy-Chr9:33629571 0 dispersed
Lcy8g0035 Lcy-Chr8:1072637 Lcy9g1020 Lcy-Chr9:33629571 1.58E-202 dispersed
Lcy8g1773 Lcy-Chr8:44186923 Lcy9g1020 Lcy-Chr9:33629571 8.18E-47 dispersed
Lcy8g1847 Lcy-Chr8:44807867 Lcy9g1020 Lcy-Chr9:33629571 2.38E-71 dispersed
Lcy9g1020 Lcy-Chr9:33629571 Lcy2g0819 Lcy-Chr2:7416777 1.69E-75 dispersed
Lcy9g2377 Lcy-Chr9:48062212 Lcy9g1020 Lcy-Chr9:33629571 1.42E-61 dispersed
Lcy9g1020 Lcy-Chr9:33629571 Lcy9g1023 Lcy-Chr9:33684062 9.28E-64 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66178 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1020 - - - 0.0