Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1023 ATGGCTTTTTCACTGTGGATGTCAGCATGCTTCTTCATGAGCTTGCTGATATCGGCTTCCATGGCCGACGACGAACTCGACCGGTCGTCGGCCATCTCCTTGCCGGACTGCTCGTACCAATGCGGCGAAGTGGAGATTCCATTCCCATTTGGACTCACTCCGGAATGCTCCCTCAATGATGCATTTCTCGTCACTTGCAACGACTCATTTAATCCCAACAAGCCGTTCGTCGGCGACGTTCCGATCACGAGTGTTTCGGTGGATGATGGCGATCTGGTGATCGAAAATCTCGTGGCGAACTATTGTTTGGACGCCGATGGAAACATCTCCGGTCACAACCAAACGTCTCTCGAGTCGAGCCGGTTCACCATCTCGACGAAGAACATCTTCACCGTCGTCGGGTGCAGCACCGTCGCGATGATCGGCGGCATCCTCCAAGACGACGAGAATTACTTGTCGGGGTGTGCGTCGTTCTGCAGTAGCTACCGGAACATGCCGAACGGATCGTGCTCCGGCGTCGGGTGCTGCCAGATGGCGATTCCAAGCGGCCTGAAACAGATGAATCTGACGGTGGCGGGAGGGGAACAGACGAACGGGTCGGATATTTATTCGTGTGGGTACAGCTTCGTGGTGGAGGAGGCGGAGTTCAAGTTCTCGTCGGCGTATGTTCCACACTTTCCGAATGCGACGGTGCCAATGGTGTTGGATTGGTCCGTCGGCGACGAGCAGTGCAAGGACGCTGTGGGTGGCGAGAGGTATGCGTGTCAAGGGAATAGCAGCTGCCGCGACGCTGACTCCATGCGGGGTTATCGCTGCAAGTGCTTGGATGGCTTCGCCGGGAATCCGTATTTGCCACGTAGTGGTTGCCAAGACATCAATGAATGTGATGATCGTAATAAGAATGAGTGTACGGATATATGTATAAATACGATAGGAGGTTATGAATGTAGATGTCCAAAGGGACACTCCGGCGATGGGAGAAAGAACGGCAGTGGCTGTGCTCGCCGCCGTGGGTTTCATGTTCTCCTATTAGTTTTTGGTATCGCCCTCGGCGTAATGGTCCTACTGGTAAGTTCCTCCTGGTTCTACATCGGCTTCAAGAAATGGAAGCTCATAAAACTCAAAGCTAATTTCTTCGAACGAAACGGCGGATTAATGTTAGAGCATCAGCTTTCAATCCGAGACGAAGCCGCACAAACCGCAAAGATCTTCACGGCAGAGGAATTACAGAAAGCCACAAACAACTACTCCGACGACCGAATCGTCGGCAAGGGCGGCTTCGGAACCGTCTACAAAGGCATTCTCCCCACCGGCGCCGCCGTCGCCATCAAGAAATCCAAGATCGTCGACAAAACTCAGAACAAACAGTTCATCAACGAAGTCGTCGTCCTCTCGCAGATCAACCACCGAAACGCAGTCAAACTCTTAGGCTGTTGTTTGGAAGAAGAAGTTCCTCTTCTCGTCTACGAATTCGTCTCGAACGGTACGCTCTTCGATCACATCCACCGTAGAAAATCGCAGCGGCCGATTCCTTGGAAGATCCGCCTCAAAATCGCGTCGGAAACCGCCGGCGTTCTCTCGTATCTGCACTCGTCGGCGACGATTCCGATCATTCACAGAGATGTGAAGTCGACGAACATTCTGCTCGATGAAAATTTCACCGCGAAGGTCTCCGATTTCGGTGCTTCGAAGTTAGTTCCCTTGGATCAGGTCGATTTGAACACGATCGTGCAAGGAACTCTCGGATACCTAGATCCAGAGTATTTGCAGACCAGTCAATTGACGGAGAAGAGCGACGTGTACAGTTTCGGCGTCGTTCTCGTGGAATTGATGACCGGAAAACCTCCTCTGTCGTTCAGCCGATCGGAGGAAGAACGGAATCTATCGATGTACTTCTTAATTGCTATGAAACAGAATCGGCTTACAGAAATTTTGGACAAAAATCTGGGAAGCGATGTAGATTGCGAGCACTTGAAGGAAGTTGCGAGCCTTGCGAAGAGGTGTTTGAGAGTGAAGGGGGAAGAAAGGCCGACGATGAAGGAGGTTGCTGCAGAGCTTGAAGGATTGTTTCAACTGGCGTTTGGTCATCCATGGATTGTTGATGATAAATCTTCGTCTGTTGAAGAAACAGAACTTTTGGTTAGTGAAGAGAAGGAAAAGGAAGCTCATGTTCATTCTGTTCGTCGTGATGTTGAAACTGAAACTGAAACGGAAACCGAAACTCACTGTACGGATAATGGGAGTAATCGATATGATAGTTTTCCCGCTAACCAAATTATACCAAAAGCAAATTCCGGGAGGTAA 2304 50.61 MAFSLWMSACFFMSLLISASMADDELDRSSAISLPDCSYQCGEVEIPFPFGLTPECSLNDAFLVTCNDSFNPNKPFVGDVPITSVSVDDGDLVIENLVANYCLDADGNISGHNQTSLESSRFTISTKNIFTVVGCSTVAMIGGILQDDENYLSGCASFCSSYRNMPNGSCSGVGCCQMAIPSGLKQMNLTVAGGEQTNGSDIYSCGYSFVVEEAEFKFSSAYVPHFPNATVPMVLDWSVGDEQCKDAVGGERYACQGNSSCRDADSMRGYRCKCLDGFAGNPYLPRSGCQDINECDDRNKNECTDICINTIGGYECRCPKGHSGDGRKNGSGCARRRGFHVLLLVFGIALGVMVLLVSSSWFYIGFKKWKLIKLKANFFERNGGLMLEHQLSIRDEAAQTAKIFTAEELQKATNNYSDDRIVGKGGFGTVYKGILPTGAAVAIKKSKIVDKTQNKQFINEVVVLSQINHRNAVKLLGCCLEEEVPLLVYEFVSNGTLFDHIHRRKSQRPIPWKIRLKIASETAGVLSYLHSSATIPIIHRDVKSTNILLDENFTAKVSDFGASKLVPLDQVDLNTIVQGTLGYLDPEYLQTSQLTEKSDVYSFGVVLVELMTGKPPLSFSRSEEERNLSMYFLIAMKQNRLTEILDKNLGSDVDCEHLKEVASLAKRCLRVKGEERPTMKEVAAELEGLFQLAFGHPWIVDDKSSSVEETELLVSEEKEKEAHVHSVRRDVETETETETETHCTDNGSNRYDSFPANQIIPKANSGR 767
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 33684062 33688950 + Maker00017767 Lcy9g1023 642139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1023 767 SUPERFAMILY EGF/Laminin 290 326 - -
Lcy9g1023 767 ProSitePatterns Protein kinases ATP-binding region signature. 422 445 IPR017441 GO:0005524(InterPro)
Lcy9g1023 767 Gene3D Transferase(Phosphotransferase) domain 1 492 694 - -
Lcy9g1023 767 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 34 703 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Lcy9g1023 767 Pfam Protein kinase domain 416 683 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1023 767 CDD EGF_CA 291 325 - -
Lcy9g1023 767 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 307 318 IPR000152 -
Lcy9g1023 767 SUPERFAMILY Protein kinase-like (PK-like) 401 690 IPR011009 -
Lcy9g1023 767 Gene3D Laminin 294 335 - -
Lcy9g1023 767 MobiDBLite consensus disorder prediction 718 767 - -
Lcy9g1023 767 Gene3D Phosphorylase Kinase; domain 1 384 491 - -
Lcy9g1023 767 ProSiteProfiles Protein kinase domain profile. 416 699 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1023 767 CDD STKc_IRAK 422 689 - -
Lcy9g1023 767 FunFam Wall-associated receptor kinase 2 492 710 - -
Lcy9g1023 767 Pfam Calcium-binding EGF domain 291 326 IPR049883 -
Lcy9g1023 767 MobiDBLite consensus disorder prediction 718 745 - -
Lcy9g1023 767 ProSitePatterns Serine/Threonine protein kinases active-site signature. 537 549 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g1023 767 SMART egfca_6 241 290 IPR001881 GO:0005509(InterPro)
Lcy9g1023 767 SMART egfca_6 291 334 IPR001881 GO:0005509(InterPro)
Lcy9g1023 767 FunFam Wall-associated receptor kinase 2 386 491 - -
Lcy9g1023 767 MobiDBLite consensus disorder prediction 746 767 - -
Lcy9g1023 767 ProSiteProfiles EGF-like domain profile. 291 325 IPR000742 -
Lcy9g1023 767 SMART serkin_6 416 699 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1023 767 FunFam Fibrillin 2 286 329 - -
Lcy9g1023 767 Gene3D Laminin 252 293 - -
Lcy9g1023 767 ProSitePatterns Calcium-binding EGF-like domain signature. 291 316 IPR018097 GO:0005509(InterPro)
Lcy9g1023 767 SMART egf_5 243 290 IPR000742 -
Lcy9g1023 767 SMART egf_5 294 334 IPR000742 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1289 Lcy-Chr10:35754333 Lcy9g1023 Lcy-Chr9:33684062 1.53E-52 dispersed
Lcy10g1291 Lcy-Chr10:35789184 Lcy9g1023 Lcy-Chr9:33684062 8.52E-235 dispersed
Lcy10g2238 Lcy-Chr10:46187843 Lcy9g1023 Lcy-Chr9:33684062 2.64E-88 dispersed
Lcy1g1473 Lcy-Chr1:14369832 Lcy9g1023 Lcy-Chr9:33684062 7.34E-87 dispersed
Lcy9g1023 Lcy-Chr9:33684062 Lcy7g0086 Lcy-Chr7:813779 3.89E-66 dispersed
Lcy9g1759 Lcy-Chr9:42784375 Lcy9g1023 Lcy-Chr9:33684062 2.09E-52 dispersed
Lcy9g1020 Lcy-Chr9:33629571 Lcy9g1023 Lcy-Chr9:33684062 9.28E-64 proximal
Lcy9g2377 Lcy-Chr9:48062212 Lcy9g1023 Lcy-Chr9:33684062 7.17E-193 transposed
Lcy10g1275 Lcy-Chr10:35527108 Lcy9g1023 Lcy-Chr9:33684062 1.43E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66179 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1023 - - - 0.0