Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy9g1066 | ATGGCCGACGATTACCCCGATAAGAACATCCTCCAGAGCACTGCTCTTCTCAAGTATATACTGGAAGCCAACGCCTATCCAAGAGAGCATCAACAGTTGAAGGAACTCAGAGAAACCACCTACCACAAGTTCGCCAAGCCAAAGAAAGTGATCGGTGTACCGGCGGATCAAGGATTGTTTCTATCGATGCTTTTGAAATTGATGAACGCAAAGAAAACTATAGAGCTCGGTGTTTTCACCGGCTATTCTCTCCTCACCACTGCGCTTGCACTGCCTGCTGACGGCCAGATAACAGCCATTGATATGAATAGAGAATCATTCGAAATTGGTTTGCCATTTATCAAGAAGGCGGGAGTTGATCATAAAATCAATTTTGTGGAATCTCAAGCATTGGTTGCCCTGAATGACCTCCTCAATGATGGCAGAGAAGGAGAATTTGATTTTGCATTTGTGGATGCCAACAAATCAGAGTTCATAAAATATCACGAGTTGCTTATAAAATTAGTGAAGGTTGGTGGAGTAATTGCCTATGATAACACCCTCTGGTATGGAAATGTGGTGCTGAGGGACGATCTTATCCATGAAGATTTTAAAGCTAATGCAACTCATATTCGAGAGCTTAATGCTTTTCTAGTCAATGACTCACGTGTGGAGATATCTCTCATCTCTATTGGAGATGGCCTCACTCTATGCAGGCGTATTCAATAG | 708 | 42.8 | MADDYPDKNILQSTALLKYILEANAYPREHQQLKELRETTYHKFAKPKKVIGVPADQGLFLSMLLKLMNAKKTIELGVFTGYSLLTTALALPADGQITAIDMNRESFEIGLPFIKKAGVDHKINFVESQALVALNDLLNDGREGEFDFAFVDANKSEFIKYHELLIKLVKVGGVIAYDNTLWYGNVVLRDDLIHEDFKANATHIRELNAFLVNDSRVEISLISIGDGLTLCRRIQ | 235 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 34474792 | 34479546 | - | Maker00017833 | Lcy9g1066 | 642182 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy9g1066 | 235 | ProSiteProfiles | SAM-dependent O-methyltransferase class I-type profile. | 9 | 234 | IPR002935 | GO:0008171(InterPro) | |
| Lcy9g1066 | 235 | Gene3D | Vaccinia Virus protein VP39 | 2 | 235 | IPR029063 | - | |
| Lcy9g1066 | 235 | Pfam | O-methyltransferase | 25 | 234 | IPR002935 | GO:0008171(InterPro) | |
| Lcy9g1066 | 235 | PANTHER | O-METHYLTRANSFERASE-RELATED | 7 | 234 | IPR050362 | GO:0008757(PANTHER) | |
| Lcy9g1066 | 235 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 16 | 233 | IPR029063 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy3g1119 | Lcy-Chr3:36171050 | Lcy9g1066 | Lcy-Chr9:34474792 | 3.04E-79 | dispersed | |
| Lcy6g0512 | Lcy-Chr6:4789456 | Lcy9g1066 | Lcy-Chr9:34474792 | 1.22E-77 | dispersed | |
| Lcy6g0683 | Lcy-Chr6:6636380 | Lcy9g1066 | Lcy-Chr9:34474792 | 2.00E-33 | dispersed | |
| Lcy6g0684 | Lcy-Chr6:6645411 | Lcy9g1066 | Lcy-Chr9:34474792 | 5.80E-27 | dispersed | |
| Lcy7g0050 | Lcy-Chr7:387716 | Lcy9g1066 | Lcy-Chr9:34474792 | 1.00E-72 | dispersed | |
| Lcy9g1066 | Lcy-Chr9:34474792 | Lcy9g1067 | Lcy-Chr9:34502324 | 1.41E-167 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy9g1066 | K00588 | - | csv:101212121 | 352.058 |