Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy9g1075 | ATGCTAAGGAATCTCCTTCTTCCTCCTCATTTCTTCACCATAGCCTTGATTTTATCTGTAAACTCCCTTCTCTTTTCTTCTTGTTACTCCATTGATGAACAGGGTAGAGCTCTTCTTACATGGAAGAATAATCTAACAAGCCCCACAAATGCTTTGAGTTCATGGAATCTCGAGGCCCCAACGCCATGTTCGTGGCTTGGAATTATCTGCGATCCGAACGGACAGGTGATACAGGTAGCCCTGAGATCAATGGATTTGCATGGTACATTGCCTACAAACCTTCATGCTCTCAAGTTCTTGAGCATCTTTGTCGTCTCTTCGACGAATATTACGGGACCGATTCCGAAAGAGTTTGGAGATTATAGGGAGCTCACTGTTCTTGATCTCACCGAGAATTACCTTTTGGGAAAAGTCCCAGAAGAGATTTGCAGGCTGAGCAAGCTGCAGGATTTGTCTCTTCATGGTAATGAGCTTGATGGGAATATACCTTCGGAGATTGGAAATCTTACAAACCTTGAGTATCTCCAACTCTCTGATAACAACTTCATTGGGGAGATTCCAAAGAGCATTGGAATGTTGAAGAAGCTTTATCATTTCAAACTTGGAGGGAATAAATATATCAGTGGTATGTTGCCAATGGAGATTGGAAACTGCAGCAGTTTATCCTTCTTAGGCTTACCTGAAACCGGACTCACCGGTCTTCCTTCATCGATTGGGATGATGACAAGCCTTCAGAGCATAGCCATCTATAACTCACAACTTTCCGGATCAATCCCAGAGGAGATTGGAAACTGTAGTGAGTTGCATAATATTTACCTGTATAATAATAAGCTTTCCGGGCTGGTACCGAGAGGGATCGGAAAGCTGAAAAATCTTCAAAACGTTAATCTATGGATGAACAAATTGGAGGGTGGCATTCCAGAAGAAATTGGAAACTGCAAGGAACTTGTAGTCCTAGACATTTCGGACAATCTTCTAGATGGAAGCATACCAAAAAGTATTGGACAGCTTTCAAATCTTCAAGAGCTTCAACTGAGTAATAATCAGATGACTGGTACACTACCTTCTGAAATCTCTAATTGTGTGTCTTTGGTTCACATGGAAATAGACAACAACAAATTATCGGGCGAGATACCGGCTTCTCTTGGCAACTTGAAGAACTTGAATTTATTTTACGCCTGGCAGAACAAACTTACAGGCAGTATTCCCAGCACCATCTCAGGCTGCCTGACTCTCCAGTCTCTTGATCTCTCTTTCAATCAACTGTCCGGTGAGTTACCGAAAGAGATGTTCACGTTGCAAAATCTCACCAAAGTTCTTCTGATGTCAAACAATCTGTCCGGGATCATTCCACTCGAGATAGAAAAATGTACGAATCTATACAGGTTAAGACTGGCTACAAATAGGATTGGAGGTACTATTCCATCAGAGATTGGGAATCTGAAGAACTTAACTTTTCTAGACATAGCTGAAAACCTTCTTGTTGGAGGAATTCCTCCATCGTTAGCGAGAAGTGATTGTCTTCAGTTACTCGATCTCCATTCGAACGGGTTGACGAGTCCTCTTCCAAATGATCTGCCAAAGAAACTACAGGTTTTGGATATGTCCAACAACAGGCTTACTGGTCAGGTCAATCCCAGCATAGGAGGATTGACGAACCTAACAAAACTCGTCCTCAGAAACAACCAACTTTCAGGGAAAATCCCTGGAGAAATCATTTCCTGCAAGAAGCTCCAGTCTTTAGATCTTAGCAACAACCGCTTCTCTGGGGAACTCCCAAAGGAATTGGGTCAAATTGTTTCACTTGAAATTTCTCTTAATCTAAGTAACAATCAATTTTCAGGTGAAATCCCATTCGAATTCTCTAGTCTCACCAAGCTAGGAATGCTAGACCTCTCCCACAACAACCTCTCTGGGAACCTTAGCCATCTTGTACAGCTTGAAAACCTTGTGTCTCTAAACATCTCCTACAACAACTTCTCCGGCAAATTGCCCGACACGATGTTCTTTCAAAAGCTCCCTCTACATGACATTGCCGGAAACAAAGACCTCTACGTTTCAAATGACCTAGTAACTATTACAAACAAGTTGATATCCAACGGAAGCAGAGATGTAATAAAGGTTGGCTTACCAATCCTGATCGGCATAAGTGCAGTCTTGTTCTTTCTAGCAATCTACATGCTGATCCGCACACACATGGCCAATTCAATCCCCCTCACAGAAGACGAAAAATGGGAAATAACCATGTTTCAAAAGCTCGAATTTTCGATCGAGGACATCCTCCACAACTTATCTTCATCCAACGTGATCGGCACCGGAAGCTCCGGTGTCGTCTACAGAGTCACAACCCCAAATGGAGGAAATATGGCAGTGAAGAAAATATGGGCTACAGAAGAGACTGGAGCCTTCAACACTGAAATCCAAACTTTGGGATCAATTCGACACAAGAACATAATCAGGCTACTGGGTTGGGGAACCAACAGGAATTCGAAGCTCCTGTTTTATGATTACCTCCCAAATGGAAGCTTGAGCTCCCTTATCCATGGAGATGGAGAAGGAGGAGCAGAATGGGAGGTCAGATACGAAGCCCTACTAGGAGTGGCTCATGCTCTTGCATATCTCCACCATGATTGTGCTCCAGCAATCTCACATGGCGATGTTAAATCCATGAACGTCCTGCTCGGCCATAACTTTGAACCATACCTAGCCGACTTTGGGCTAGCCAAAAACGTCGGTACAAACAGCGAAGATATTGGTTCAGAGCAGCCATCGCTGAGACCTCAGCTTGCTGGCTCTTTCGGCTACATGGCCCCTGAACAAGGGTCGATGACGAGAGTCACAGAGAAGAGCGATGTGTACAGCTTCGGAGTAATGATAATGGAGGTTCTAACAGGGCGGCACCCACTGGACCCGACTTTGCCTGGAGAAGCCAATTTGGTGCAATGGGTTCAAGACCATTTGGCCACAAGTAAAATCCCAGTCGCCATTTTCGATTCGAATCTCAAAGGAAGAACCGATCCCATAATGCAGGAAATGCTTCAAACCCTAGCCGTCGCATCGATCTGTGTCAGCGTGAAGCCCGACGATCGACCCCCTATGAAAGATGTCGTCGCGATGCTCGAGGAGATTCGACATGTCGAATCGGGAAGAGCCGCCGCTGACAACCCGAAGCTAGGAAAGGTGGTGGTGGTGGTTCAGTCTCCGCCGCCATCGCTGCCACCGGAGAAGTTTTTATCTTATGATTCAAGCTGA | 3252 | 44.62 | MLRNLLLPPHFFTIALILSVNSLLFSSCYSIDEQGRALLTWKNNLTSPTNALSSWNLEAPTPCSWLGIICDPNGQVIQVALRSMDLHGTLPTNLHALKFLSIFVVSSTNITGPIPKEFGDYRELTVLDLTENYLLGKVPEEICRLSKLQDLSLHGNELDGNIPSEIGNLTNLEYLQLSDNNFIGEIPKSIGMLKKLYHFKLGGNKYISGMLPMEIGNCSSLSFLGLPETGLTGLPSSIGMMTSLQSIAIYNSQLSGSIPEEIGNCSELHNIYLYNNKLSGLVPRGIGKLKNLQNVNLWMNKLEGGIPEEIGNCKELVVLDISDNLLDGSIPKSIGQLSNLQELQLSNNQMTGTLPSEISNCVSLVHMEIDNNKLSGEIPASLGNLKNLNLFYAWQNKLTGSIPSTISGCLTLQSLDLSFNQLSGELPKEMFTLQNLTKVLLMSNNLSGIIPLEIEKCTNLYRLRLATNRIGGTIPSEIGNLKNLTFLDIAENLLVGGIPPSLARSDCLQLLDLHSNGLTSPLPNDLPKKLQVLDMSNNRLTGQVNPSIGGLTNLTKLVLRNNQLSGKIPGEIISCKKLQSLDLSNNRFSGELPKELGQIVSLEISLNLSNNQFSGEIPFEFSSLTKLGMLDLSHNNLSGNLSHLVQLENLVSLNISYNNFSGKLPDTMFFQKLPLHDIAGNKDLYVSNDLVTITNKLISNGSRDVIKVGLPILIGISAVLFFLAIYMLIRTHMANSIPLTEDEKWEITMFQKLEFSIEDILHNLSSSNVIGTGSSGVVYRVTTPNGGNMAVKKIWATEETGAFNTEIQTLGSIRHKNIIRLLGWGTNRNSKLLFYDYLPNGSLSSLIHGDGEGGAEWEVRYEALLGVAHALAYLHHDCAPAISHGDVKSMNVLLGHNFEPYLADFGLAKNVGTNSEDIGSEQPSLRPQLAGSFGYMAPEQGSMTRVTEKSDVYSFGVMIMEVLTGRHPLDPTLPGEANLVQWVQDHLATSKIPVAIFDSNLKGRTDPIMQEMLQTLAVASICVSVKPDDRPPMKDVVAMLEEIRHVESGRAAADNPKLGKVVVVVQSPPPSLPPEKFLSYDSS | 1083 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 34624923 | 34628270 | - | Maker00017915 | Lcy9g1075 | 642191 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy9g1075 | 1083 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 882 | 894 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy9g1075 | 1083 | SMART | LRR_typ_2 | 145 | 168 | IPR003591 | - | |
Lcy9g1075 | 1083 | SMART | LRR_typ_2 | 337 | 361 | IPR003591 | - | |
Lcy9g1075 | 1083 | SMART | LRR_typ_2 | 647 | 671 | IPR003591 | - | |
Lcy9g1075 | 1083 | SMART | LRR_typ_2 | 410 | 433 | IPR003591 | - | |
Lcy9g1075 | 1083 | SMART | LRR_typ_2 | 576 | 599 | IPR003591 | - | |
Lcy9g1075 | 1083 | SMART | LRR_typ_2 | 169 | 193 | IPR003591 | - | |
Lcy9g1075 | 1083 | SMART | LRR_typ_2 | 551 | 575 | IPR003591 | - | |
Lcy9g1075 | 1083 | SMART | LRR_typ_2 | 289 | 313 | IPR003591 | - | |
Lcy9g1075 | 1083 | SMART | LRR_typ_2 | 481 | 505 | IPR003591 | - | |
Lcy9g1075 | 1083 | FunFam | Nuclear pore complex protein NUP107 | 31 | 182 | - | - | |
Lcy9g1075 | 1083 | Pfam | Leucine Rich Repeat | 649 | 667 | IPR001611 | GO:0005515(InterPro) | |
Lcy9g1075 | 1083 | Pfam | Leucine Rich Repeat | 291 | 313 | IPR001611 | GO:0005515(InterPro) | |
Lcy9g1075 | 1083 | Pfam | Leucine Rich Repeat | 124 | 145 | IPR001611 | GO:0005515(InterPro) | |
Lcy9g1075 | 1083 | Pfam | Leucine Rich Repeat | 412 | 431 | IPR001611 | GO:0005515(InterPro) | |
Lcy9g1075 | 1083 | Pfam | Leucine Rich Repeat | 459 | 481 | IPR001611 | GO:0005515(InterPro) | |
Lcy9g1075 | 1083 | Pfam | Leucine Rich Repeat | 147 | 169 | IPR001611 | GO:0005515(InterPro) | |
Lcy9g1075 | 1083 | Pfam | Leucine Rich Repeat | 605 | 624 | IPR001611 | GO:0005515(InterPro) | |
Lcy9g1075 | 1083 | Pfam | Leucine Rich Repeat | 171 | 192 | IPR001611 | GO:0005515(InterPro) | |
Lcy9g1075 | 1083 | Gene3D | Ribonuclease Inhibitor | 143 | 232 | IPR032675 | - | |
Lcy9g1075 | 1083 | PANTHER | RECEPTOR-LIKE PROTEIN 55 | 450 | 1041 | - | - | |
Lcy9g1075 | 1083 | FunFam | LRR receptor-like serine/threonine-protein kinase ERECTA | 428 | 522 | - | - | |
Lcy9g1075 | 1083 | PRINTS | Leucine-rich repeat signature | 412 | 425 | - | - | |
Lcy9g1075 | 1083 | PRINTS | Leucine-rich repeat signature | 624 | 637 | - | - | |
Lcy9g1075 | 1083 | FunFam | Leucine-rich repeat receptor-like protein kinase | 838 | 1057 | - | - | |
Lcy9g1075 | 1083 | FunFam | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 | 734 | 837 | - | - | |
Lcy9g1075 | 1083 | ProSiteProfiles | Leucine-rich repeat profile. | 626 | 648 | IPR001611 | GO:0005515(InterPro) | |
Lcy9g1075 | 1083 | SUPERFAMILY | RNI-like | 282 | 659 | - | - | |
Lcy9g1075 | 1083 | SUPERFAMILY | RNI-like | 81 | 372 | - | - | |
Lcy9g1075 | 1083 | ProSiteProfiles | Protein kinase domain profile. | 764 | 1043 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy9g1075 | 1083 | Gene3D | Ribonuclease Inhibitor | 427 | 526 | IPR032675 | - | |
Lcy9g1075 | 1083 | Gene3D | Ribonuclease Inhibitor | 605 | 690 | IPR032675 | - | |
Lcy9g1075 | 1083 | Gene3D | Ribonuclease Inhibitor | 233 | 330 | IPR032675 | - | |
Lcy9g1075 | 1083 | Gene3D | Ribonuclease Inhibitor | 331 | 426 | IPR032675 | - | |
Lcy9g1075 | 1083 | Pfam | Leucine rich repeat | 315 | 374 | IPR001611 | GO:0005515(InterPro) | |
Lcy9g1075 | 1083 | Pfam | Leucine rich repeat | 529 | 588 | IPR001611 | GO:0005515(InterPro) | |
Lcy9g1075 | 1083 | FunFam | Putative LRR receptor-like serine/threonine-protein kinase | 605 | 690 | - | - | |
Lcy9g1075 | 1083 | Pfam | Protein kinase domain | 767 | 1037 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy9g1075 | 1083 | ProSiteProfiles | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 28 | - | - | |
Lcy9g1075 | 1083 | SMART | LRR_sd22_2 | 265 | 294 | - | - | |
Lcy9g1075 | 1083 | SMART | LRR_sd22_2 | 527 | 553 | - | - | |
Lcy9g1075 | 1083 | SMART | LRR_sd22_2 | 145 | 171 | - | - | |
Lcy9g1075 | 1083 | SMART | LRR_sd22_2 | 481 | 500 | - | - | |
Lcy9g1075 | 1083 | SMART | LRR_sd22_2 | 624 | 643 | - | - | |
Lcy9g1075 | 1083 | SMART | LRR_sd22_2 | 313 | 339 | - | - | |
Lcy9g1075 | 1083 | FunFam | Putative LRR receptor-like serine/threonine-protein kinase At4g26540 family | 525 | 604 | - | - | |
Lcy9g1075 | 1083 | ProSitePatterns | Protein kinases ATP-binding region signature. | 770 | 793 | IPR017441 | GO:0005524(InterPro) | |
Lcy9g1075 | 1083 | Pfam | Leucine rich repeat N-terminal domain | 32 | 71 | IPR013210 | - | |
Lcy9g1075 | 1083 | FunFam | LRR receptor-like serine/threonine-protein kinase RCH1 | 205 | 427 | - | - | |
Lcy9g1075 | 1083 | SMART | serkin_6 | 764 | 1040 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy9g1075 | 1083 | Gene3D | Ribonuclease Inhibitor | 527 | 604 | IPR032675 | - | |
Lcy9g1075 | 1083 | Gene3D | Ribonuclease Inhibitor | 33 | 142 | IPR032675 | - | |
Lcy9g1075 | 1083 | Gene3D | Transferase(Phosphotransferase) domain 1 | 838 | 1062 | - | - | |
Lcy9g1075 | 1083 | Gene3D | Phosphorylase Kinase; domain 1 | 736 | 837 | - | - | |
Lcy9g1075 | 1083 | SUPERFAMILY | Protein kinase-like (PK-like) | 748 | 1043 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy5g2201 | Lcy-Chr5:45079666 | Lcy9g1075 | Lcy-Chr9:34624923 | 5.43E-86 | dispersed | |
Lcy9g1075 | Lcy-Chr9:34624923 | Lcy9g2275 | Lcy-Chr9:47182689 | 5.18E-65 | dispersed | |
Lcy9g1075 | Lcy-Chr9:34624923 | Lcy9g0919 | Lcy-Chr9:31005023 | 2.84E-96 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
66180 | None | None | None | None | Lcy | PK |
Pathway information
