Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1075 ATGCTAAGGAATCTCCTTCTTCCTCCTCATTTCTTCACCATAGCCTTGATTTTATCTGTAAACTCCCTTCTCTTTTCTTCTTGTTACTCCATTGATGAACAGGGTAGAGCTCTTCTTACATGGAAGAATAATCTAACAAGCCCCACAAATGCTTTGAGTTCATGGAATCTCGAGGCCCCAACGCCATGTTCGTGGCTTGGAATTATCTGCGATCCGAACGGACAGGTGATACAGGTAGCCCTGAGATCAATGGATTTGCATGGTACATTGCCTACAAACCTTCATGCTCTCAAGTTCTTGAGCATCTTTGTCGTCTCTTCGACGAATATTACGGGACCGATTCCGAAAGAGTTTGGAGATTATAGGGAGCTCACTGTTCTTGATCTCACCGAGAATTACCTTTTGGGAAAAGTCCCAGAAGAGATTTGCAGGCTGAGCAAGCTGCAGGATTTGTCTCTTCATGGTAATGAGCTTGATGGGAATATACCTTCGGAGATTGGAAATCTTACAAACCTTGAGTATCTCCAACTCTCTGATAACAACTTCATTGGGGAGATTCCAAAGAGCATTGGAATGTTGAAGAAGCTTTATCATTTCAAACTTGGAGGGAATAAATATATCAGTGGTATGTTGCCAATGGAGATTGGAAACTGCAGCAGTTTATCCTTCTTAGGCTTACCTGAAACCGGACTCACCGGTCTTCCTTCATCGATTGGGATGATGACAAGCCTTCAGAGCATAGCCATCTATAACTCACAACTTTCCGGATCAATCCCAGAGGAGATTGGAAACTGTAGTGAGTTGCATAATATTTACCTGTATAATAATAAGCTTTCCGGGCTGGTACCGAGAGGGATCGGAAAGCTGAAAAATCTTCAAAACGTTAATCTATGGATGAACAAATTGGAGGGTGGCATTCCAGAAGAAATTGGAAACTGCAAGGAACTTGTAGTCCTAGACATTTCGGACAATCTTCTAGATGGAAGCATACCAAAAAGTATTGGACAGCTTTCAAATCTTCAAGAGCTTCAACTGAGTAATAATCAGATGACTGGTACACTACCTTCTGAAATCTCTAATTGTGTGTCTTTGGTTCACATGGAAATAGACAACAACAAATTATCGGGCGAGATACCGGCTTCTCTTGGCAACTTGAAGAACTTGAATTTATTTTACGCCTGGCAGAACAAACTTACAGGCAGTATTCCCAGCACCATCTCAGGCTGCCTGACTCTCCAGTCTCTTGATCTCTCTTTCAATCAACTGTCCGGTGAGTTACCGAAAGAGATGTTCACGTTGCAAAATCTCACCAAAGTTCTTCTGATGTCAAACAATCTGTCCGGGATCATTCCACTCGAGATAGAAAAATGTACGAATCTATACAGGTTAAGACTGGCTACAAATAGGATTGGAGGTACTATTCCATCAGAGATTGGGAATCTGAAGAACTTAACTTTTCTAGACATAGCTGAAAACCTTCTTGTTGGAGGAATTCCTCCATCGTTAGCGAGAAGTGATTGTCTTCAGTTACTCGATCTCCATTCGAACGGGTTGACGAGTCCTCTTCCAAATGATCTGCCAAAGAAACTACAGGTTTTGGATATGTCCAACAACAGGCTTACTGGTCAGGTCAATCCCAGCATAGGAGGATTGACGAACCTAACAAAACTCGTCCTCAGAAACAACCAACTTTCAGGGAAAATCCCTGGAGAAATCATTTCCTGCAAGAAGCTCCAGTCTTTAGATCTTAGCAACAACCGCTTCTCTGGGGAACTCCCAAAGGAATTGGGTCAAATTGTTTCACTTGAAATTTCTCTTAATCTAAGTAACAATCAATTTTCAGGTGAAATCCCATTCGAATTCTCTAGTCTCACCAAGCTAGGAATGCTAGACCTCTCCCACAACAACCTCTCTGGGAACCTTAGCCATCTTGTACAGCTTGAAAACCTTGTGTCTCTAAACATCTCCTACAACAACTTCTCCGGCAAATTGCCCGACACGATGTTCTTTCAAAAGCTCCCTCTACATGACATTGCCGGAAACAAAGACCTCTACGTTTCAAATGACCTAGTAACTATTACAAACAAGTTGATATCCAACGGAAGCAGAGATGTAATAAAGGTTGGCTTACCAATCCTGATCGGCATAAGTGCAGTCTTGTTCTTTCTAGCAATCTACATGCTGATCCGCACACACATGGCCAATTCAATCCCCCTCACAGAAGACGAAAAATGGGAAATAACCATGTTTCAAAAGCTCGAATTTTCGATCGAGGACATCCTCCACAACTTATCTTCATCCAACGTGATCGGCACCGGAAGCTCCGGTGTCGTCTACAGAGTCACAACCCCAAATGGAGGAAATATGGCAGTGAAGAAAATATGGGCTACAGAAGAGACTGGAGCCTTCAACACTGAAATCCAAACTTTGGGATCAATTCGACACAAGAACATAATCAGGCTACTGGGTTGGGGAACCAACAGGAATTCGAAGCTCCTGTTTTATGATTACCTCCCAAATGGAAGCTTGAGCTCCCTTATCCATGGAGATGGAGAAGGAGGAGCAGAATGGGAGGTCAGATACGAAGCCCTACTAGGAGTGGCTCATGCTCTTGCATATCTCCACCATGATTGTGCTCCAGCAATCTCACATGGCGATGTTAAATCCATGAACGTCCTGCTCGGCCATAACTTTGAACCATACCTAGCCGACTTTGGGCTAGCCAAAAACGTCGGTACAAACAGCGAAGATATTGGTTCAGAGCAGCCATCGCTGAGACCTCAGCTTGCTGGCTCTTTCGGCTACATGGCCCCTGAACAAGGGTCGATGACGAGAGTCACAGAGAAGAGCGATGTGTACAGCTTCGGAGTAATGATAATGGAGGTTCTAACAGGGCGGCACCCACTGGACCCGACTTTGCCTGGAGAAGCCAATTTGGTGCAATGGGTTCAAGACCATTTGGCCACAAGTAAAATCCCAGTCGCCATTTTCGATTCGAATCTCAAAGGAAGAACCGATCCCATAATGCAGGAAATGCTTCAAACCCTAGCCGTCGCATCGATCTGTGTCAGCGTGAAGCCCGACGATCGACCCCCTATGAAAGATGTCGTCGCGATGCTCGAGGAGATTCGACATGTCGAATCGGGAAGAGCCGCCGCTGACAACCCGAAGCTAGGAAAGGTGGTGGTGGTGGTTCAGTCTCCGCCGCCATCGCTGCCACCGGAGAAGTTTTTATCTTATGATTCAAGCTGA 3252 44.62 MLRNLLLPPHFFTIALILSVNSLLFSSCYSIDEQGRALLTWKNNLTSPTNALSSWNLEAPTPCSWLGIICDPNGQVIQVALRSMDLHGTLPTNLHALKFLSIFVVSSTNITGPIPKEFGDYRELTVLDLTENYLLGKVPEEICRLSKLQDLSLHGNELDGNIPSEIGNLTNLEYLQLSDNNFIGEIPKSIGMLKKLYHFKLGGNKYISGMLPMEIGNCSSLSFLGLPETGLTGLPSSIGMMTSLQSIAIYNSQLSGSIPEEIGNCSELHNIYLYNNKLSGLVPRGIGKLKNLQNVNLWMNKLEGGIPEEIGNCKELVVLDISDNLLDGSIPKSIGQLSNLQELQLSNNQMTGTLPSEISNCVSLVHMEIDNNKLSGEIPASLGNLKNLNLFYAWQNKLTGSIPSTISGCLTLQSLDLSFNQLSGELPKEMFTLQNLTKVLLMSNNLSGIIPLEIEKCTNLYRLRLATNRIGGTIPSEIGNLKNLTFLDIAENLLVGGIPPSLARSDCLQLLDLHSNGLTSPLPNDLPKKLQVLDMSNNRLTGQVNPSIGGLTNLTKLVLRNNQLSGKIPGEIISCKKLQSLDLSNNRFSGELPKELGQIVSLEISLNLSNNQFSGEIPFEFSSLTKLGMLDLSHNNLSGNLSHLVQLENLVSLNISYNNFSGKLPDTMFFQKLPLHDIAGNKDLYVSNDLVTITNKLISNGSRDVIKVGLPILIGISAVLFFLAIYMLIRTHMANSIPLTEDEKWEITMFQKLEFSIEDILHNLSSSNVIGTGSSGVVYRVTTPNGGNMAVKKIWATEETGAFNTEIQTLGSIRHKNIIRLLGWGTNRNSKLLFYDYLPNGSLSSLIHGDGEGGAEWEVRYEALLGVAHALAYLHHDCAPAISHGDVKSMNVLLGHNFEPYLADFGLAKNVGTNSEDIGSEQPSLRPQLAGSFGYMAPEQGSMTRVTEKSDVYSFGVMIMEVLTGRHPLDPTLPGEANLVQWVQDHLATSKIPVAIFDSNLKGRTDPIMQEMLQTLAVASICVSVKPDDRPPMKDVVAMLEEIRHVESGRAAADNPKLGKVVVVVQSPPPSLPPEKFLSYDSS 1083
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 34624923 34628270 - Maker00017915 Lcy9g1075 642191
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1075 1083 ProSitePatterns Serine/Threonine protein kinases active-site signature. 882 894 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g1075 1083 SMART LRR_typ_2 145 168 IPR003591 -
Lcy9g1075 1083 SMART LRR_typ_2 337 361 IPR003591 -
Lcy9g1075 1083 SMART LRR_typ_2 647 671 IPR003591 -
Lcy9g1075 1083 SMART LRR_typ_2 410 433 IPR003591 -
Lcy9g1075 1083 SMART LRR_typ_2 576 599 IPR003591 -
Lcy9g1075 1083 SMART LRR_typ_2 169 193 IPR003591 -
Lcy9g1075 1083 SMART LRR_typ_2 551 575 IPR003591 -
Lcy9g1075 1083 SMART LRR_typ_2 289 313 IPR003591 -
Lcy9g1075 1083 SMART LRR_typ_2 481 505 IPR003591 -
Lcy9g1075 1083 FunFam Nuclear pore complex protein NUP107 31 182 - -
Lcy9g1075 1083 Pfam Leucine Rich Repeat 649 667 IPR001611 GO:0005515(InterPro)
Lcy9g1075 1083 Pfam Leucine Rich Repeat 291 313 IPR001611 GO:0005515(InterPro)
Lcy9g1075 1083 Pfam Leucine Rich Repeat 124 145 IPR001611 GO:0005515(InterPro)
Lcy9g1075 1083 Pfam Leucine Rich Repeat 412 431 IPR001611 GO:0005515(InterPro)
Lcy9g1075 1083 Pfam Leucine Rich Repeat 459 481 IPR001611 GO:0005515(InterPro)
Lcy9g1075 1083 Pfam Leucine Rich Repeat 147 169 IPR001611 GO:0005515(InterPro)
Lcy9g1075 1083 Pfam Leucine Rich Repeat 605 624 IPR001611 GO:0005515(InterPro)
Lcy9g1075 1083 Pfam Leucine Rich Repeat 171 192 IPR001611 GO:0005515(InterPro)
Lcy9g1075 1083 Gene3D Ribonuclease Inhibitor 143 232 IPR032675 -
Lcy9g1075 1083 PANTHER RECEPTOR-LIKE PROTEIN 55 450 1041 - -
Lcy9g1075 1083 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 428 522 - -
Lcy9g1075 1083 PRINTS Leucine-rich repeat signature 412 425 - -
Lcy9g1075 1083 PRINTS Leucine-rich repeat signature 624 637 - -
Lcy9g1075 1083 FunFam Leucine-rich repeat receptor-like protein kinase 838 1057 - -
Lcy9g1075 1083 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 734 837 - -
Lcy9g1075 1083 ProSiteProfiles Leucine-rich repeat profile. 626 648 IPR001611 GO:0005515(InterPro)
Lcy9g1075 1083 SUPERFAMILY RNI-like 282 659 - -
Lcy9g1075 1083 SUPERFAMILY RNI-like 81 372 - -
Lcy9g1075 1083 ProSiteProfiles Protein kinase domain profile. 764 1043 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1075 1083 Gene3D Ribonuclease Inhibitor 427 526 IPR032675 -
Lcy9g1075 1083 Gene3D Ribonuclease Inhibitor 605 690 IPR032675 -
Lcy9g1075 1083 Gene3D Ribonuclease Inhibitor 233 330 IPR032675 -
Lcy9g1075 1083 Gene3D Ribonuclease Inhibitor 331 426 IPR032675 -
Lcy9g1075 1083 Pfam Leucine rich repeat 315 374 IPR001611 GO:0005515(InterPro)
Lcy9g1075 1083 Pfam Leucine rich repeat 529 588 IPR001611 GO:0005515(InterPro)
Lcy9g1075 1083 FunFam Putative LRR receptor-like serine/threonine-protein kinase 605 690 - -
Lcy9g1075 1083 Pfam Protein kinase domain 767 1037 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1075 1083 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 28 - -
Lcy9g1075 1083 SMART LRR_sd22_2 265 294 - -
Lcy9g1075 1083 SMART LRR_sd22_2 527 553 - -
Lcy9g1075 1083 SMART LRR_sd22_2 145 171 - -
Lcy9g1075 1083 SMART LRR_sd22_2 481 500 - -
Lcy9g1075 1083 SMART LRR_sd22_2 624 643 - -
Lcy9g1075 1083 SMART LRR_sd22_2 313 339 - -
Lcy9g1075 1083 FunFam Putative LRR receptor-like serine/threonine-protein kinase At4g26540 family 525 604 - -
Lcy9g1075 1083 ProSitePatterns Protein kinases ATP-binding region signature. 770 793 IPR017441 GO:0005524(InterPro)
Lcy9g1075 1083 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Lcy9g1075 1083 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 205 427 - -
Lcy9g1075 1083 SMART serkin_6 764 1040 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1075 1083 Gene3D Ribonuclease Inhibitor 527 604 IPR032675 -
Lcy9g1075 1083 Gene3D Ribonuclease Inhibitor 33 142 IPR032675 -
Lcy9g1075 1083 Gene3D Transferase(Phosphotransferase) domain 1 838 1062 - -
Lcy9g1075 1083 Gene3D Phosphorylase Kinase; domain 1 736 837 - -
Lcy9g1075 1083 SUPERFAMILY Protein kinase-like (PK-like) 748 1043 IPR011009 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g2201 Lcy-Chr5:45079666 Lcy9g1075 Lcy-Chr9:34624923 5.43E-86 dispersed
Lcy9g1075 Lcy-Chr9:34624923 Lcy9g2275 Lcy-Chr9:47182689 5.18E-65 dispersed
Lcy9g1075 Lcy-Chr9:34624923 Lcy9g0919 Lcy-Chr9:31005023 2.84E-96 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66180 None None None None Lcy PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1075 - - - 0.0