Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1080 ATGGTGTGTGGCCAACCGCCATTCCCTCTTTGCTTTAAATATCTGTCTATGAGGGCCACTCCGCCCGACACCCCCTTCAATCTTGCTAGAGTATCTGGGTTGGTCTTTAATGGGGGCCAACGCCTTTGGCGTATTTCTAAGCCGTCTGATTGTTGTTTTCACTTTTTGTTCTTGATATCGCGAGCCTGGTTGGTTATAGTTGGAAAAGGTTATTTTGCAATGATTCATTCTGGTTTCTTCCTTGCGGGTCCTTCATTTAATTCTGATGCTACTACTTCTTTCATATCAACTCCCTTGTCTGGAGAAGATGGCGCTACAGCTGATGATATTAGAAACGATACCTCTGATTCCCTCCCCCCTTCTTTCTGGGTTAGAACGGCGATGAAAATATCTAGAGCCAGATGGTTCATTTTCTTGAGAAGAGTTTTCCACTACCAGAACGGATCGAGATCTGATCTTGGGCCGAATCCTTTCAATTCGGGTTCGTGGATGGCGATGGAACTTGTAGCTCTGTTGTTTCAGCTAATCATCTCAGTGCTTACTCTTGCCATTTCACAAACTGAGAGGCCAGTCTGGCCTATGAGATTGTGGATAGGTGGTTATGATCTTGGCTGTGTTCTCAGCTTACTGCTTCTCTATGGTCGCTATTGGTATCATTATCTAATACAGGGAGATGGTAACGGTCTGTTGGATATCGAACAGCAGAGGAGCAATGATTCATCTAGGTACTCACATTTGATGAACAAATGCCGCACGTCTCTCGATCTTTTCTTCGCAATATGGTTTGTAATGGGCAATCTTTGGGTCTTCGACTCTCGCTTTGCCTCGTTCCAAAAAGCTCCCAAGCTACATCTACTATGCAGCTTCCTGCTAGTTTGGAATGCCATCTGCTACTCTTTCCCATTCATTCTGTTTCTGCTGCTATGTTGCTGTGTGCCATTGATTAGCAGTCTCATAGGATATAACATTAACATGGGGTCTACCGAAAAAGGAGCATTGGACGATCAGATTTCCCAGCTACCTTGCTGGAGATACAAAGCAGTCGAGGCCAACATCAACCCCGGAAGTCAACCGGATAATAACAATACAGGACTTCCAAAAGAGGATCCAGAATGTTGCATTTGCCTTGCCAAGTATATAGACAAGGAAGAAGTGAGACAGTTGCCTTGTTCCCATGTGTTTCATCTCAAGTGTGTAGATAAGTGGCTTGCTATTACATCTTCATGCCCTCTCTATAAGGGAAGGTGCTTTTCAATGATCAGTTCTGGTTATTTCGTTTCGGGTCCGATGTGTAACTGCAGTGGCACTGCTTCCTATATCTCAAATTCGTTGGTGGAAGAAGATGGTGTAGGTGCGAATGTTAGAGATGACAATTCTGTTGCTCTCCCTGCATCTTTCTGGGTTAGGATGGCAATGGGAGTGTCTAGAGCCAGGTGGTTCATTTTCTTAAGAAGAGTATTTCACTACCAGAACGGATCGAGATCGGATCTTGGGTCTGATCCTTTCAATTCTAGCTCGTGGATGGCAATGGAGCTGGTTGCTATGGTGTTTCAGTTGGCCATCACCGTGTTTTTTCTTGCCATTTCAAAGACTGAGAAACCAGTTTGGCCTATGAGACTCTGGATAGTTGGTTATGATCTTGGCTGCGTTCTTAGTTTGTTGCTTCTCTATGGGCGCTATTGGCATCTTTATTTAATGCGTGGCGACCGTGTCAGCCTTTCTGATACTGAGCAGCGGAGGAGCAGTCAAGCATCAAGGACCTTGCGTTTGATGAACAAATGTCGATCATCTCTTGAACTCTTCTTTGCAATATGGTTTGTGATGGGTAATGTTTGGATTGTCGACTCTCGCTTCGGTTCTTTCCAAAGAGCTCCCAAGCTTCATCTGTTATGCGTCTTCCTGTTAGTTTGGAATGCCATCTGCTACTCCTTTCCATTCATTCTTTTTCTGCTGCTATGTTGCTGTGTGCCATTGATTAGTAACCTTCTAGGATATAACATTAACATGGCGTCAACCGACAAAGGAGCATCAGATGATCAAATTTCCCAGCTACCATGCTGGAGATATAAAGCAAGCTCAAAGCAACCTGATAGCAACAAAGGACTTCCAAAAGAGGATCCAGAATGTTGCATTTGCCTTGTCAAGTACAGAGATGAAGAAGAAGTGAGACAGTTGCCTTGTTCCCATTTGTTTCATCTCAAGTGTGTAGATAAGTGGCTTGCTATCACATCTTCCTGCCCTCTCTCACGGAATGGTTATCGTCATGGCCGTGCTTGTCCAAGGGTAGTTTAG 2292 44.46 MVCGQPPFPLCFKYLSMRATPPDTPFNLARVSGLVFNGGQRLWRISKPSDCCFHFLFLISRAWLVIVGKGYFAMIHSGFFLAGPSFNSDATTSFISTPLSGEDGATADDIRNDTSDSLPPSFWVRTAMKISRARWFIFLRRVFHYQNGSRSDLGPNPFNSGSWMAMELVALLFQLIISVLTLAISQTERPVWPMRLWIGGYDLGCVLSLLLLYGRYWYHYLIQGDGNGLLDIEQQRSNDSSRYSHLMNKCRTSLDLFFAIWFVMGNLWVFDSRFASFQKAPKLHLLCSFLLVWNAICYSFPFILFLLLCCCVPLISSLIGYNINMGSTEKGALDDQISQLPCWRYKAVEANINPGSQPDNNNTGLPKEDPECCICLAKYIDKEEVRQLPCSHVFHLKCVDKWLAITSSCPLYKGRCFSMISSGYFVSGPMCNCSGTASYISNSLVEEDGVGANVRDDNSVALPASFWVRMAMGVSRARWFIFLRRVFHYQNGSRSDLGSDPFNSSSWMAMELVAMVFQLAITVFFLAISKTEKPVWPMRLWIVGYDLGCVLSLLLLYGRYWHLYLMRGDRVSLSDTEQRRSSQASRTLRLMNKCRSSLELFFAIWFVMGNVWIVDSRFGSFQRAPKLHLLCVFLLVWNAICYSFPFILFLLLCCCVPLISNLLGYNINMASTDKGASDDQISQLPCWRYKASSKQPDSNKGLPKEDPECCICLVKYRDEEEVRQLPCSHLFHLKCVDKWLAITSSCPLSRNGYRHGRACPRVV 763
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 34675033 34684973 - Maker00017943 Lcy9g1080 642196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1080 763 SUPERFAMILY RING/U-box 708 748 - -
Lcy9g1080 763 SMART ring_2 709 749 IPR001841 -
Lcy9g1080 763 SMART ring_2 372 412 IPR001841 -
Lcy9g1080 763 ProSiteProfiles Zinc finger RING-type profile. 372 413 IPR001841 -
Lcy9g1080 763 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 96 413 - -
Lcy9g1080 763 ProSiteProfiles Zinc finger RING-type profile. 709 750 IPR001841 -
Lcy9g1080 763 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 322 416 IPR013083 -
Lcy9g1080 763 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 664 754 IPR013083 -
Lcy9g1080 763 Pfam Ring finger domain 708 748 IPR001841 -
Lcy9g1080 763 Pfam Ring finger domain 371 411 IPR001841 -
Lcy9g1080 763 SUPERFAMILY RING/U-box 367 411 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1313 Lcy-Chr13:30772176 Lcy9g1080 Lcy-Chr9:34675033 5.18E-50 dispersed
Lcy9g1080 Lcy-Chr9:34675033 Lcy4g0518 Lcy-Chr4:6262193 2.37E-10 dispersed
Lcy9g1080 Lcy-Chr9:34675033 Lcy5g0778 Lcy-Chr5:11492601 8.77E-34 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1080 - - - 0.0