Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1112 ATGGCTAGCGAACAAGCGAGACAGCCGCTGCTACCAACATCGTCTAATACTATTGGAACCAGGTTAATAGATATTCCTAGAAGCAAAGGACGATTGAGGCGCACTAAGAGTGCTCCCCATGCAGATTCTCCTCATACAGAGACCACCGGCACTGGCACTGCCACGGCCACTGGTCCAGTTCCACGTTCAGGATTAGTTTTTGGAAACCTACACCCAAGTTTCAGAAGAGTAGCCTTAGTTTTAATAATATACTTGGGTATAGGAACTTTGTGTTTTTACCTTGTCAGGGACCAAATCAGAGGGGAAAAAACAAACGGAATAGTTGATGCCATTTATTTCACTATTGTGACAATGACAACTGTTGGATACGGAGATCTTGTCCCAAACAGTCCCTCCACAAAGCTACTAGCTTGTGCTTTTGTTTTCACAGGAATGGCCGTAGTTGGTCTAATACTTAGCAATGCAGCTGATTATTTGGTAGAGAAGCAGGAAATCTTGCTATTTAAGGCCTTGCATGAGCACCAAAATGCTGGATCTTGTGACATCACAAAAGAATTTGATACTAATAAAGCTAGAAACAAGTGTATAGTGGTGTTTCTCTTTCTTCTTTTGTTCATCATTTCTGGGACTGCCTTTCTAATCTCCCTTGAAAAGTTGGATTTCATTGATGCCTTTTATTGTGTATGTTCTACCATCACTACGCTAGGCTATGGAGATAAAAGCTTCTCGACTAAGTGGGGGCGTATCTTCGCCATTCTCTGGATCTTGATAAGTACCATCACTCTGGCTCAGTTTTTCCTTTACATTGCTGAACTAAAGACTGAAAGAAGGCAAAAGTCTTTGGTAAAGTGGGTTCTAAGTAAAAAGGTGACAGACTTAGACCTCGAGGTTGCCGATCTTGATAATGACGGGGTCGTCGGAGCTGCAGAATTTGTCCTACACAAGCTCAAAGAGATGGGGAAAATTACTGAAGATGACATTTCACCTGTGCTGAAGGAATTTGAGAATCTTGATGTTGATCAGTCAGGAACCTTGTCCACATCTGATATAACACTTGCTCAATTGTCTTAA 1071 41.92 MASEQARQPLLPTSSNTIGTRLIDIPRSKGRLRRTKSAPHADSPHTETTGTGTATATGPVPRSGLVFGNLHPSFRRVALVLIIYLGIGTLCFYLVRDQIRGEKTNGIVDAIYFTIVTMTTVGYGDLVPNSPSTKLLACAFVFTGMAVVGLILSNAADYLVEKQEILLFKALHEHQNAGSCDITKEFDTNKARNKCIVVFLFLLLFIISGTAFLISLEKLDFIDAFYCVCSTITTLGYGDKSFSTKWGRIFAILWILISTITLAQFFLYIAELKTERRQKSLVKWVLSKKVTDLDLEVADLDNDGVVGAAEFVLHKLKEMGKITEDDISPVLKEFENLDVDQSGTLSTSDITLAQLS 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35050265 35053941 - Maker00017705 Lcy9g1112 642228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1112 356 Gene3D - 71 165 - -
Lcy9g1112 356 FunFam Calcium-activated outward-rectifying potassium channel 1 71 166 - -
Lcy9g1112 356 SUPERFAMILY Voltage-gated potassium channels 74 166 - -
Lcy9g1112 356 PRINTS Two pore domain K+ channel signature 233 242 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Lcy9g1112 356 PRINTS Two pore domain K+ channel signature 116 144 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Lcy9g1112 356 ProSitePatterns EF-hand calcium-binding domain. 299 311 IPR018247 -
Lcy9g1112 356 Pfam Ion channel 201 271 IPR013099 -
Lcy9g1112 356 Pfam Ion channel 80 160 IPR013099 -
Lcy9g1112 356 MobiDBLite consensus disorder prediction 42 57 - -
Lcy9g1112 356 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 77 296 IPR003280 GO:0005267(InterPro)|GO:0005887(PANTHER)|GO:0009705(PANTHER)|GO:0015271(PANTHER)|GO:0016020(InterPro)|GO:0022841(PANTHER)|GO:0030322(PANTHER)|GO:0071805(InterPro)|GO:0071805(PANTHER)
Lcy9g1112 356 SUPERFAMILY Voltage-gated potassium channels 188 292 - -
Lcy9g1112 356 Gene3D - 179 285 - -
Lcy9g1112 356 SUPERFAMILY EF-hand 283 351 IPR011992 -
Lcy9g1112 356 MobiDBLite consensus disorder prediction 29 57 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0208 Lcy-Chr1:1903952 Lcy9g1112 Lcy-Chr9:35050265 7.84E-46 dispersed
Lcy5g1179 Lcy-Chr5:26404189 Lcy9g1112 Lcy-Chr9:35050265 9.27E-83 dispersed
Lcy9g1112 Lcy-Chr9:35050265 Lcy5g1368 Lcy-Chr5:32561668 7.19E-112 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1112 K05389 - csv:101216032 588.186