Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy9g1120 | ATGAGCAGGATCTTCTCTTTCCATTCTCATGGGTTTTTTCTGCTGATTCTTGTTCTTCTTCTCTTGGCTTTCGCCGGAGAGAGCTCCGGCGTCGGCGGCGGCGGCGGCAGTGCTGTTGCAGCAGGGAGATCGTATTCCATGATCGGTTGGGATGATTTGCACGTGGATCCTCACGTGCGGCCGGGGCTGAACTCCGGCGAGTTCGAGAATGGGAGTAGGATAATTGTGGTGGATAAGAATGGCTCCGGCGACTCCACGACGGTGCAAGGGGCGGTCGACTTGGTTCCTCATAATAACAAACAGAGAGTTAAGATTTATATTCTTCCTGGAATTTACAGGGAGAAGGTATTTATCCCCATCACCAAGCCATATATTTCATTCATCGGTAACACGCAACGAGTTTCAGACACTGTTATTACATGGAACGACAAGGCGTCGGACAGAGATATCAATGGAATGGAACTCGGGACGTATAGAACGGCGACCGTTGCGATCGAATCCGACTATTTTTGTGCGACGGGAATCACATTCGAGAATACAGTTGTTGCAGCGCCTGGAGATAAAGGAAGACAAGCTGTGGCTCTAAGAATTTCAGGAGATAAGGCCATGTTTTATAAAGCCAAATTCTTAGGAGGACAAGATACACTTTTGGATGACATGGGCACTCACTATTTCTTTCAATGTCATATTTATGGAAGTGTCGATTTCATATTTGGTAACGCTAAATCACTCTACGAGCAATGTGTAATAACTTCCACAGCAGAAAGCTCTGGAGCAATAGCAGCACACCATCGATCCTCGCCGAACGACGACACCGGGTTCTCTTTCGTGCGCTGCGTAGTCAATGGAAGTGGCAAAGTACTCCTAGGAAGAGCATGGGGAAACTATTCAAGAACAATATATGCTTACTGTTACATTGAAGATATAATAACTCCATTAGGATGGAGTGACTGGAACGACCCAGCAAGACAAAGGACAGTAGTTTTTGGGCAATATAATTGCAGAGGCAGTGGAGCTAACACACAAGGTTGGGTGCCATGGGCAAGGACTTTTAGCTCTGAGGAAGTGAGACCTCTTGTAGATAAGAAATTCATCAATGGAGAACAATGGCTTAACTTATGA | 1122 | 46.17 | MSRIFSFHSHGFFLLILVLLLLAFAGESSGVGGGGGSAVAAGRSYSMIGWDDLHVDPHVRPGLNSGEFENGSRIIVVDKNGSGDSTTVQGAVDLVPHNNKQRVKIYILPGIYREKVFIPITKPYISFIGNTQRVSDTVITWNDKASDRDINGMELGTYRTATVAIESDYFCATGITFENTVVAAPGDKGRQAVALRISGDKAMFYKAKFLGGQDTLLDDMGTHYFFQCHIYGSVDFIFGNAKSLYEQCVITSTAESSGAIAAHHRSSPNDDTGFSFVRCVVNGSGKVLLGRAWGNYSRTIYAYCYIEDIITPLGWSDWNDPARQRTVVFGQYNCRGSGANTQGWVPWARTFSSEEVRPLVDKKFINGEQWLNL | 373 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 35112843 | 35116137 | - | Maker00017813 | Lcy9g1120 | 642236 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy9g1120 | 373 | Gene3D | - | 69 | 373 | IPR012334 | - | |
| Lcy9g1120 | 373 | SUPERFAMILY | Pectin lyase-like | 73 | 372 | IPR011050 | - | |
| Lcy9g1120 | 373 | PANTHER | ACYL-COA THIOESTER HYDROLASE YBHC-RELATED | 29 | 372 | - | GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER) | |
| Lcy9g1120 | 373 | ProSitePatterns | Pectinesterase signature 2. | 230 | 239 | IPR033131 | - | |
| Lcy9g1120 | 373 | FunFam | Pectinesterase | 70 | 373 | - | - | |
| Lcy9g1120 | 373 | Pfam | Pectinesterase | 75 | 367 | IPR000070 | GO:0030599(InterPro)|GO:0042545(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy12g1830 | Lcy-Chr12:39414750 | Lcy9g1120 | Lcy-Chr9:35112843 | 1.15E-90 | dispersed | |
| Lcy3g1835 | Lcy-Chr3:45532293 | Lcy9g1120 | Lcy-Chr9:35112843 | 1.61E-84 | dispersed | |
| Lcy6g0737 | Lcy-Chr6:7166923 | Lcy9g1120 | Lcy-Chr9:35112843 | 7.41E-83 | dispersed | |
| Lcy6g0939 | Lcy-Chr6:9606805 | Lcy9g1120 | Lcy-Chr9:35112843 | 2.19E-14 | dispersed | |
| Lcy9g1120 | Lcy-Chr9:35112843 | Lcy9g1690 | Lcy-Chr9:42119248 | 6.75E-49 | dispersed | |
| Lcy9g1120 | Lcy-Chr9:35112843 | Lcy13g1971 | Lcy-Chr13:38749996 | 1.07E-63 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy9g1120 | K01051 | - | csv:101209316 | 568.54 |