Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1120 ATGAGCAGGATCTTCTCTTTCCATTCTCATGGGTTTTTTCTGCTGATTCTTGTTCTTCTTCTCTTGGCTTTCGCCGGAGAGAGCTCCGGCGTCGGCGGCGGCGGCGGCAGTGCTGTTGCAGCAGGGAGATCGTATTCCATGATCGGTTGGGATGATTTGCACGTGGATCCTCACGTGCGGCCGGGGCTGAACTCCGGCGAGTTCGAGAATGGGAGTAGGATAATTGTGGTGGATAAGAATGGCTCCGGCGACTCCACGACGGTGCAAGGGGCGGTCGACTTGGTTCCTCATAATAACAAACAGAGAGTTAAGATTTATATTCTTCCTGGAATTTACAGGGAGAAGGTATTTATCCCCATCACCAAGCCATATATTTCATTCATCGGTAACACGCAACGAGTTTCAGACACTGTTATTACATGGAACGACAAGGCGTCGGACAGAGATATCAATGGAATGGAACTCGGGACGTATAGAACGGCGACCGTTGCGATCGAATCCGACTATTTTTGTGCGACGGGAATCACATTCGAGAATACAGTTGTTGCAGCGCCTGGAGATAAAGGAAGACAAGCTGTGGCTCTAAGAATTTCAGGAGATAAGGCCATGTTTTATAAAGCCAAATTCTTAGGAGGACAAGATACACTTTTGGATGACATGGGCACTCACTATTTCTTTCAATGTCATATTTATGGAAGTGTCGATTTCATATTTGGTAACGCTAAATCACTCTACGAGCAATGTGTAATAACTTCCACAGCAGAAAGCTCTGGAGCAATAGCAGCACACCATCGATCCTCGCCGAACGACGACACCGGGTTCTCTTTCGTGCGCTGCGTAGTCAATGGAAGTGGCAAAGTACTCCTAGGAAGAGCATGGGGAAACTATTCAAGAACAATATATGCTTACTGTTACATTGAAGATATAATAACTCCATTAGGATGGAGTGACTGGAACGACCCAGCAAGACAAAGGACAGTAGTTTTTGGGCAATATAATTGCAGAGGCAGTGGAGCTAACACACAAGGTTGGGTGCCATGGGCAAGGACTTTTAGCTCTGAGGAAGTGAGACCTCTTGTAGATAAGAAATTCATCAATGGAGAACAATGGCTTAACTTATGA 1122 46.17 MSRIFSFHSHGFFLLILVLLLLAFAGESSGVGGGGGSAVAAGRSYSMIGWDDLHVDPHVRPGLNSGEFENGSRIIVVDKNGSGDSTTVQGAVDLVPHNNKQRVKIYILPGIYREKVFIPITKPYISFIGNTQRVSDTVITWNDKASDRDINGMELGTYRTATVAIESDYFCATGITFENTVVAAPGDKGRQAVALRISGDKAMFYKAKFLGGQDTLLDDMGTHYFFQCHIYGSVDFIFGNAKSLYEQCVITSTAESSGAIAAHHRSSPNDDTGFSFVRCVVNGSGKVLLGRAWGNYSRTIYAYCYIEDIITPLGWSDWNDPARQRTVVFGQYNCRGSGANTQGWVPWARTFSSEEVRPLVDKKFINGEQWLNL 373
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 35112843 35116137 - Maker00017813 Lcy9g1120 642236
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1120 373 Gene3D - 69 373 IPR012334 -
Lcy9g1120 373 SUPERFAMILY Pectin lyase-like 73 372 IPR011050 -
Lcy9g1120 373 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 29 372 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Lcy9g1120 373 ProSitePatterns Pectinesterase signature 2. 230 239 IPR033131 -
Lcy9g1120 373 FunFam Pectinesterase 70 373 - -
Lcy9g1120 373 Pfam Pectinesterase 75 367 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1830 Lcy-Chr12:39414750 Lcy9g1120 Lcy-Chr9:35112843 1.15E-90 dispersed
Lcy3g1835 Lcy-Chr3:45532293 Lcy9g1120 Lcy-Chr9:35112843 1.61E-84 dispersed
Lcy6g0737 Lcy-Chr6:7166923 Lcy9g1120 Lcy-Chr9:35112843 7.41E-83 dispersed
Lcy6g0939 Lcy-Chr6:9606805 Lcy9g1120 Lcy-Chr9:35112843 2.19E-14 dispersed
Lcy9g1120 Lcy-Chr9:35112843 Lcy9g1690 Lcy-Chr9:42119248 6.75E-49 dispersed
Lcy9g1120 Lcy-Chr9:35112843 Lcy13g1971 Lcy-Chr13:38749996 1.07E-63 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1120 K01051 - csv:101209316 568.54