Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy9g1146 | ATGCCGGAGAATGAGAGTCGCTGTGTTGTTACAGAGCCACGTTTAGTGGCTAGAAAGTTTCTGGCTAGGCCTCAGCATGAAGGGTTGGGCGCCATTGTTAGAAGGAGCATTGGAAGGTTTGAGCTGAAATACTTTGACCCTTTTCTGGTTTTGGATGAATTTTCAGTGACTGCCCCAGCTGGTTTCCCAGATCATCCACATAGAGGATTTGAGACAGTTACCTACATGTTACAGGGAAGTTTGACACATGAAGATTTTGAAGGCCACAAGGGAACAATAAGTGCAGGTGACTTGCAGTGGATGACTGCAGGTAAAGGAATTGTACATTCAGAAATGCCTGCAGCCCAAGGCACCCAAAAGGGCCTCCAACTATGGATCAACCTCTCTTCCAAGAATAAAATATCAGCTTCAACAACCTCCCTTTTGCTTGTGAATGAATCTTGTAAAATATTTGTTGTGCTGTGCTGTCTTATCAGTTCTCACCTTTTTGTTTCTTCCCCTCAGCTTTAG | 510 | 44.31 | MPENESRCVVTEPRLVARKFLARPQHEGLGAIVRRSIGRFELKYFDPFLVLDEFSVTAPAGFPDHPHRGFETVTYMLQGSLTHEDFEGHKGTISAGDLQWMTAGKGIVHSEMPAAQGTQKGLQLWINLSSKNKISASTTSLLLVNESCKIFVVLCCLISSHLFVSSPQL | 169 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 35454811 | 35458543 | - | Maker00017667 | Lcy9g1146 | 642262 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy9g1146 | 169 | SUPERFAMILY | RmlC-like cupins | 14 | 134 | IPR011051 | - | |
| Lcy9g1146 | 169 | CDD | cupin_pirin_N | 33 | 128 | - | - | |
| Lcy9g1146 | 169 | Pfam | Pirin | 33 | 126 | IPR003829 | - | |
| Lcy9g1146 | 169 | Gene3D | Jelly Rolls | 27 | 137 | IPR014710 | - | |
| Lcy9g1146 | 169 | PANTHER | PIRIN-RELATED | 10 | 135 | IPR012093 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy6g1672 | Lcy-Chr6:31459536 | Lcy9g1146 | Lcy-Chr9:35454811 | 3.49E-79 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy9g1146 | K06911 | - | csv:101216351 | 256.144 |