Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1148 ATGAGTTGCTCGAAGAAGATTCCGGCAATGTCTTCTTCTTACAGCACTCACCTTCTTCTGTTTCCTCTCCTTCTTCACTCGTTCGTGGCGCTGGTCTCTGCTCAGGGATCTAATAATACCGCTCCATGGCAGACTCTGAGTGGTCAGTATAGAGGTGCTCCTTTTGTTGTGGCTCGTGGTGGATTTTCAGGGCTGTTTCCTGATTCGAGTGGACTTGCCTATAATCTTGCACTTTCGCTCAGTGTTCCTGATGTGATCTTATGGTGCGATGTGCAATTAACTAAGGATGGAGTTGGAATTTGTCTCCCGGATCTGAGGCTTGACAATGCTACTGACGTTGTGAGCATTCTGGGGCCAAACCGCAGCAATGTCTATCTTGTTAATGGAGTCCCTACTAAGGGATTGTTTACGGTCGATGTCGATTCCCAAGATCTGGCAAATGTTTCTCTTATTCAAGGTGTCTATTCTCGAACTAATAAGTTTGATGGCAATGGTCTTGTTATTCTCACTCCTGAAGATGTGGTTAATCAGTTCAAGCCACCAGGACTTTGGCTGAATATTCAGCATGATGCATTCTTCAAACAACAAAACTTGAGCATGAGGAACTTTGTACTTTCTGTATCCAGACGCATCGGTGTTAACTATATATCATCACCAGAGGTGGGATTTCTTAGGAGTATAGCTGCAAGATTTAATCCCCGCACGACAAAGTTGATCCTTCGATTCTTAGAACCAACTGATATTGAGGTTACCACCAATCAGACGTATGACTCTCTCTTACGCAATCTCACCTTTATCAAGACATTTGCTTCTGGAATTCTTGTTCCCAAGACTTATATATGGCCCATTGATAAAGATGGTTACATACAACCTCAACAAACCTCTCTTGTTTCTGATGCTCATAAAGCACAGCTGGAAGTTTTTGCATCCGAGTTCTATAGTGACCTTCCACTAGGCTTCAACTACAGTTATGATCCCATTACTGAATACCTGTCTTACATCGACAATGGAAAATTTTCAGTCGATGGTGTGCTCACCGATTTCCCTATTAGTCCATCGTCAGCTATTGATTGTTTTGCTCATTTGGATAAGAATGCAAAAACTCAAGCTAAGCCTGTGGTTATTTCAAAATTTGGTGCTAGTGGAGACTACCCTGGTTGTACAGACTTGGCGTATTCCAATGCTATTTTAGATGGTGTAGAGGTGCTTGATTGTCCTGTTCAAATATCAAAAGATGGAACACCATTTTGCATGAGCTCAATCAATCTTATAGAAAGCACAACAATAGCTCAAACACAATTCACTTCTCGTTCAAAAAAAATTCCCGCAATTGGTCCTAATGACGGAATTTTTGCTTTTGACTTAACGTGGGAAGAGATTCAAGGCCTAACCCCATCAATATTGAGCCCTTACTCAAAGTTCACGTTGTTCCGAAACCCAAGGTTCCGAAACAGTGGGAAATTCTTAACGCTACCTGATTTCTTGGCCATGGCAAAGAATGCAAGCACTCTTTCTGGTGTCTTGATCCATATTGAGCTGATGTTAGATGCATTACTCAACCCTCTTGATTGTGAAGAATGA 1581 42.0 MSCSKKIPAMSSSYSTHLLLFPLLLHSFVALVSAQGSNNTAPWQTLSGQYRGAPFVVARGGFSGLFPDSSGLAYNLALSLSVPDVILWCDVQLTKDGVGICLPDLRLDNATDVVSILGPNRSNVYLVNGVPTKGLFTVDVDSQDLANVSLIQGVYSRTNKFDGNGLVILTPEDVVNQFKPPGLWLNIQHDAFFKQQNLSMRNFVLSVSRRIGVNYISSPEVGFLRSIAARFNPRTTKLILRFLEPTDIEVTTNQTYDSLLRNLTFIKTFASGILVPKTYIWPIDKDGYIQPQQTSLVSDAHKAQLEVFASEFYSDLPLGFNYSYDPITEYLSYIDNGKFSVDGVLTDFPISPSSAIDCFAHLDKNAKTQAKPVVISKFGASGDYPGCTDLAYSNAILDGVEVLDCPVQISKDGTPFCMSSINLIESTTIAQTQFTSRSKKIPAIGPNDGIFAFDLTWEEIQGLTPSILSPYSKFTLFRNPRFRNSGKFLTLPDFLAMAKNASTLSGVLIHIELMLDALLNPLDCEE 526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35473643 35479329 - Maker00017747 Lcy9g1148 642264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1148 526 Gene3D Phosphatidylinositol (PI) phosphodiesterase 355 521 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Lcy9g1148 526 FunFam Glycerophosphodiester phosphodiesterase GDPDL3 52 355 - -
Lcy9g1148 526 SUPERFAMILY PLC-like phosphodiesterases 371 513 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Lcy9g1148 526 Pfam Glycerophosphoryl diester phosphodiesterase family 61 349 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
Lcy9g1148 526 Pfam Glycerophosphoryl diester phosphodiesterase family 379 501 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
Lcy9g1148 526 CDD GDPD_SHV3_repeat_1 54 355 - -
Lcy9g1148 526 ProSiteProfiles GP-PDE domain profile. 54 356 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
Lcy9g1148 526 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 19 512 - GO:0008889(PANTHER)
Lcy9g1148 526 Gene3D Phosphatidylinositol (PI) phosphodiesterase 53 352 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Lcy9g1148 526 ProSiteProfiles GP-PDE domain profile. 372 526 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
Lcy9g1148 526 SUPERFAMILY PLC-like phosphodiesterases 53 350 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0734 Lcy-Chr1:6282429 Lcy9g1148 Lcy-Chr9:35473643 6.87E-141 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1148 - - - 0.0