Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1154 ATGAGCTCCAACAATGAGCTTCCTCAATCTAACTCCGCCGCCGCCGAGCAACCAAAGAAAATCAAACGCATCAGAAACAATTCCAATTCCAATAAGAGTAGTAGTGAGTCGAACAACAACAACAACAACAATCACCCAGTGTACCGAGGCGTCCGCATGAGGAATTGGGGCAAATGGGTGTCCGAAATCCGCGAGCCTCGCAAGAAATCCCGCATTTGGTTAGGCACTTTCCCCACCCCGGAAATGGCCGCCCGTGCCCACGACGTCGCCGCCTTCAGCATCAAAGGCTCCTCCGCCACCCTCAATTTCCCCGACCTCCTCCACCTCCTCCCTCGCCCCGTCTCCCTCGCCCCTCGCGACGTCCAAGCCGCCGCCGCCAAGGCCGCCCACATGCACAACCTCGACCTCGACGACCACCACTCCCACGTCGACGACGACCTCACCGAGATCATCCAACTCCCCACCCTCGGCTTCCGATTGCCTTCTTCTCATTTGTTCCTCGTCAATCGTGGAGGATTTGTCTGTATTGGTGTAATGTCGCTGGATGGAGATGACCGGAAAAGTAGAGAAGAAAATAGAAAGGGCATTTTAGTAATTTTACCTTTTAGATGGCAATATTTTGCCATTTTTGCAAATAGTTTCAATGGCTGCTATTTTTGTAATTATTTTGGGCCGGTTTGCTACTTTTGCAACCGGCCCTAA 702 52.28 MSSNNELPQSNSAAAEQPKKIKRIRNNSNSNKSSSESNNNNNNNHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAAFSIKGSSATLNFPDLLHLLPRPVSLAPRDVQAAAAKAAHMHNLDLDDHHSHVDDDLTEIIQLPTLGFRLPSSHLFLVNRGGFVCIGVMSLDGDDRKSREENRKGILVILPFRWQYFAIFANSFNGCYFCNYFGPVCYFCNRP 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35551447 35552148 - Maker00017772 Lcy9g1154 642270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1154 233 SUPERFAMILY DNA-binding domain 47 105 IPR016177 GO:0003677(InterPro)
Lcy9g1154 233 MobiDBLite consensus disorder prediction 27 48 - -
Lcy9g1154 233 FunFam Ethylene-responsive transcription factor 2 46 105 - -
Lcy9g1154 233 MobiDBLite consensus disorder prediction 1 49 - -
Lcy9g1154 233 Gene3D AP2/ERF domain 47 105 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g1154 233 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g1154 233 MobiDBLite consensus disorder prediction 1 16 - -
Lcy9g1154 233 CDD AP2 48 106 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g1154 233 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 30 138 IPR051032 -
Lcy9g1154 233 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g1154 233 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g1154 233 SMART rav1_2 47 110 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g1154 233 Pfam AP2 domain 46 96 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1631 Lcy-Chr1:16670544 Lcy9g1154 Lcy-Chr9:35551447 1.51E-07 dispersed
Lcy7g0341 Lcy-Chr7:2864928 Lcy9g1154 Lcy-Chr9:35551447 3.41E-126 dispersed
Lcy7g0425 Lcy-Chr7:3667288 Lcy9g1154 Lcy-Chr9:35551447 4.88E-84 dispersed
Lcy9g1154 Lcy-Chr9:35551447 Lcy9g1935 Lcy-Chr9:44365003 4.53E-93 dispersed
Lcy9g1154 Lcy-Chr9:35551447 Lcy5g0043 Lcy-Chr5:584555 3.91E-122 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20644 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1154 K09286 - csv:101206242 188.348