Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1162 ATGCAAGACACAATCTCATTGACGACAGCTTCACGTGCAAGGGAGTCGGGTACCAGATTGACTGATCTCGGACAATGCTTAAAGGATAGCACGCCTATGCGAGGAGCCAAAGCGAGGATAGCTTTATCGATGTTCTTTTCTTTGAACAATGATGATGATTACACGTGGATGTATTCTCAATCAAATTTGCGCAGACCCGAATTCCGACGTTCCGATTTCCGATTCCGATTTATCGACGAACGTTGGTCGCCGGCGGTGGCGGATTCGTACCGTCTTCCCTCTAACCTTCGTATCTCTCCATACAATTGCCCATACCCCCGCCCGTTGAATTCTCTTCTTTTCCGAACGTCGATTCTGATTTCCGAACGGGGTATTTTTCGATATGTTTGTTGGTTTGTTCTATGGCCAATGGCGTATACTTTGGAATCATGGACGAAGGAATACAGTGAAGCTTTGAAACTCTCTGAAGATATCAATGCCATGATTTCTGAGAGAAATTCACTTGCCGCATCTGGGCCGGAAGCTCAACGTCATGGCTCGGCTATACGCAGGAAGATCACAATATTGGGTACCAGACTTGATACCTTGCAGACTCAGTTGCCCAAGCTTCAAGGAAAGCAACCAATACCAGAGAAAGAGATGAATCGCCGCAGGGATATGATTGCAAATTTGAGATCAAAAGCTAACCAGATGGCTTCAGCTTTGAACATGTCAAACTTTGCGAACCGTGATAGCTTACTTGGTCCAGAAATAAAGCCAGCTGATGTTATGAACAGAACAGCAGGCTTGGACAACCAAGGCCTAGTTGAGCAAGATGAAGGGCTCGAGAAACTGGAAGGGACTATAATTAGCACAAAACATATTGCATTGGCTGTCAACGAAGAACTTAACCTTCACACGAGACTCATTGATGATTTGGATGAACATGTCGATGTTACTGATTCACGATTACGGATTATTATTCTTTTTGTAACTTCTGTTCAAGAAGATTGTTCCATTGGACTGCACCCGTTCAAAGAGGAAACTGAGCTTAAGGCTTTGATCATTGCACTAATTTATAAACTTGTGCATTTGATTAAAACAGCGAGTGCAGAAGAGGCTGGCAATATTGAACAAGCGGACCAAGGGTGGTTGCACTTGCATGTCTATGATTTTATCAGTTGTTGGGATTGTCGTTCTTATCGCTGTCATATGGCTACTCATCAAGTATTTGTAATTCACTGTGTCTTGGTGTGA 1236 43.69 MQDTISLTTASRARESGTRLTDLGQCLKDSTPMRGAKARIALSMFFSLNNDDDYTWMYSQSNLRRPEFRRSDFRFRFIDERWSPAVADSYRLPSNLRISPYNCPYPRPLNSLLFRTSILISERGIFRYVCWFVLWPMAYTLESWTKEYSEALKLSEDINAMISERNSLAASGPEAQRHGSAIRRKITILGTRLDTLQTQLPKLQGKQPIPEKEMNRRRDMIANLRSKANQMASALNMSNFANRDSLLGPEIKPADVMNRTAGLDNQGLVEQDEGLEKLEGTIISTKHIALAVNEELNLHTRLIDDLDEHVDVTDSRLRIIILFVTSVQEDCSIGLHPFKEETELKALIIALIYKLVHLIKTASAEEAGNIEQADQGWLHLHVYDFISCWDCRSYRCHMATHQVFVIHCVLV 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35814301 35818498 - Maker00017757 Lcy9g1162 642278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1162 411 SUPERFAMILY SNARE fusion complex 265 319 - -
Lcy9g1162 411 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 265 327 IPR000727 -
Lcy9g1162 411 CDD SNARE_Qc 270 318 - -
Lcy9g1162 411 PANTHER SYNTAXIN 147 316 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Lcy9g1162 411 FunFam syntaxin-51 isoform X2 268 326 - -
Lcy9g1162 411 Gene3D - 267 325 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g1648 Lcy-Chr6:30409358 Lcy9g1162 Lcy-Chr9:35814301 5.27E-85 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1162 K08503 - csv:101208669 328.561