Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1188 ATGAACGCGTCTATTCACCTCCCTTTAACCATATATTTTATTTCCTTCCAGATATGTACACGTCATCGCAGATCACGACCGTCCATTACCAATCGTGAACCGTCCACGTCATCACCCGGAAAATTCCAGCTCAATCCTGACCCGTACGGATACGGATTCGCGGTGGAAACGGACTCTTGCCGCCTTCCCCAAATCTCTATAAATACTTCCGATCCTCTGCTCGATTCTCTCATCGTTCTTCCTTCCTTTTCTCTGTTCTTCTCCTTTCCTCTATCCCTTCACGCGCTTCGGCTCTTCGCGTTCTTTGTAAGTCTCCGATTCCTTCTGAATTCGTTCATCGATCTCCTTCAGATTATGTGTTTCGTTCGAGCTTTCGTCCAAACAAGGTTCATGGTTCAATTAGACCTCGAAATCCCATCTGCTTTCGATCCATTCGCCGACGCCAGGGATTCTGATGCCCCCGGAACCAAGGAGTATGTTCATATCCGCGTCCAGCAGAGGAATGGCAAAAAGTGCTTGACTACAGTTCAGGGTCTGAAGAAGGAGTTCAGCTACGAGAAGATCCTCAAAGACGTGAAGAAGGAGTTCTGCTGTAATGGTAACGTGGTCCAAGACAAAGAGTTGGGGAAGATAATTCAACTTCAGGGCGATCAGCGCAAGAACGTCTCCCAATTCCTGGTTCACGCTGGACTTGTCAAGAAGGATCAGATCAAGATCCATGGGTTCTGA 729 47.74 MNASIHLPLTIYFISFQICTRHRRSRPSITNREPSTSSPGKFQLNPDPYGYGFAVETDSCRLPQISINTSDPLLDSLIVLPSFSLFFSFPLSLHALRLFAFFVSLRFLLNSFIDLLQIMCFVRAFVQTRFMVQLDLEIPSAFDPFADARDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVHAGLVKKDQIKIHGF 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36284207 36285383 + Maker00017585 Lcy9g1188 642304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1188 242 CDD eIF1_SUI1 158 241 IPR005874 GO:0003743(InterPro)
Lcy9g1188 242 ProSiteProfiles Translation initiation factor SUI1 family profile. 160 230 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
Lcy9g1188 242 FunFam Eukaryotic translation initiation factor SUI1 132 242 - -
Lcy9g1188 242 Pfam Translation initiation factor SUI1 157 230 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
Lcy9g1188 242 NCBIfam translation initiation factor SUI1 137 242 IPR005874 GO:0003743(InterPro)
Lcy9g1188 242 Gene3D - 124 242 - -
Lcy9g1188 242 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 133 242 - GO:0003723(PANTHER)
Lcy9g1188 242 SUPERFAMILY eIF1-like 132 242 IPR036877 GO:0003743(InterPro)|GO:0006413(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0566 Lcy-Chr4:6935324 Lcy9g1188 Lcy-Chr9:36284207 6.59E-57 dispersed
Lcy4g0567 Lcy-Chr4:6939844 Lcy9g1188 Lcy-Chr9:36284207 5.98E-58 dispersed
Lcy6g1452 Lcy-Chr6:21944957 Lcy9g1188 Lcy-Chr9:36284207 2.48E-67 dispersed
Lcy9g1188 Lcy-Chr9:36284207 Lcy11g0139 Lcy-Chr11:1473233 5.12E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1188 K03113 - csv:101202908 221.09