Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy9g1188 | ATGAACGCGTCTATTCACCTCCCTTTAACCATATATTTTATTTCCTTCCAGATATGTACACGTCATCGCAGATCACGACCGTCCATTACCAATCGTGAACCGTCCACGTCATCACCCGGAAAATTCCAGCTCAATCCTGACCCGTACGGATACGGATTCGCGGTGGAAACGGACTCTTGCCGCCTTCCCCAAATCTCTATAAATACTTCCGATCCTCTGCTCGATTCTCTCATCGTTCTTCCTTCCTTTTCTCTGTTCTTCTCCTTTCCTCTATCCCTTCACGCGCTTCGGCTCTTCGCGTTCTTTGTAAGTCTCCGATTCCTTCTGAATTCGTTCATCGATCTCCTTCAGATTATGTGTTTCGTTCGAGCTTTCGTCCAAACAAGGTTCATGGTTCAATTAGACCTCGAAATCCCATCTGCTTTCGATCCATTCGCCGACGCCAGGGATTCTGATGCCCCCGGAACCAAGGAGTATGTTCATATCCGCGTCCAGCAGAGGAATGGCAAAAAGTGCTTGACTACAGTTCAGGGTCTGAAGAAGGAGTTCAGCTACGAGAAGATCCTCAAAGACGTGAAGAAGGAGTTCTGCTGTAATGGTAACGTGGTCCAAGACAAAGAGTTGGGGAAGATAATTCAACTTCAGGGCGATCAGCGCAAGAACGTCTCCCAATTCCTGGTTCACGCTGGACTTGTCAAGAAGGATCAGATCAAGATCCATGGGTTCTGA | 729 | 47.74 | MNASIHLPLTIYFISFQICTRHRRSRPSITNREPSTSSPGKFQLNPDPYGYGFAVETDSCRLPQISINTSDPLLDSLIVLPSFSLFFSFPLSLHALRLFAFFVSLRFLLNSFIDLLQIMCFVRAFVQTRFMVQLDLEIPSAFDPFADARDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVHAGLVKKDQIKIHGF | 242 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 36284207 | 36285383 | + | Maker00017585 | Lcy9g1188 | 642304 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy9g1188 | 242 | CDD | eIF1_SUI1 | 158 | 241 | IPR005874 | GO:0003743(InterPro) | |
Lcy9g1188 | 242 | ProSiteProfiles | Translation initiation factor SUI1 family profile. | 160 | 230 | IPR001950 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
Lcy9g1188 | 242 | FunFam | Eukaryotic translation initiation factor SUI1 | 132 | 242 | - | - | |
Lcy9g1188 | 242 | Pfam | Translation initiation factor SUI1 | 157 | 230 | IPR001950 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
Lcy9g1188 | 242 | NCBIfam | translation initiation factor SUI1 | 137 | 242 | IPR005874 | GO:0003743(InterPro) | |
Lcy9g1188 | 242 | Gene3D | - | 124 | 242 | - | - | |
Lcy9g1188 | 242 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 | 133 | 242 | - | GO:0003723(PANTHER) | |
Lcy9g1188 | 242 | SUPERFAMILY | eIF1-like | 132 | 242 | IPR036877 | GO:0003743(InterPro)|GO:0006413(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy4g0566 | Lcy-Chr4:6935324 | Lcy9g1188 | Lcy-Chr9:36284207 | 6.59E-57 | dispersed | |
Lcy4g0567 | Lcy-Chr4:6939844 | Lcy9g1188 | Lcy-Chr9:36284207 | 5.98E-58 | dispersed | |
Lcy6g1452 | Lcy-Chr6:21944957 | Lcy9g1188 | Lcy-Chr9:36284207 | 2.48E-67 | dispersed | |
Lcy9g1188 | Lcy-Chr9:36284207 | Lcy11g0139 | Lcy-Chr11:1473233 | 5.12E-10 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy9g1188 | K03113 | - | csv:101202908 | 221.09 |