Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1211 ATGATCTGCACGGTGAAACAATCTGCTAGGGCTATCAATTGCTCTGATGGTGCTATTCGGAGCAAAATCTCGGTTCCCTCTCAGCGATCCTCGTTTCTTCCTCCTCTTCCGGTGCAAAAACCTCGAAACTCGGCCCTTTCTGTTCATAAGGCTGTACATGTTTCTTCGCTTGAGAATTTTGGATCACTCGGTGTTCGTAAAGCTAATTTGATCAAATGCGAAGCTTACAAGGCTGAGCGATCGCAACCGATTGATTCGAGCATTGAGCTGCCGCAGAGTCAGGTTCCTTCCGAGGCTGCGAAGAAGGTGAAGATTGGATCGTACTTTGCTCTTTGGTGGGCTTTGAACGTGGTTTTCAATATCTACAACAAGAAGGTTTTGAACGCGTATCCGTATCCATGGCTGACCTCGACTCTGTCGCTCGCCGCCGGATCTCTGATCATGTTGATCTCATGGATGACGAGAATTGCTGAGGCGCCAAAAACCGATTTCGAGTTTTGGAAGTCTTTGTTCCCTGTTGCTATTGCCCATACAATTGGACATGTTGCTGCAACCGTGAGTATGTCAAAGGTTGCAGTTTCGTTCACTCACATCATCAAGAGTGGGGAACCTGCTTTTAGCGTATTGGTCTCGAGGCTCTTGTTGGGTGAGACCTTCCCACTTCCTGTCTACTTGTCGCTCCTCCCAATTATCGGTGGGTGCGCTCTCGCTGCTGTGACTGAGCTGAACTTTAACATGACGGGTTTCATGGGTGCCATGATATCAAACTTAGCATTTGTGTTCCGTAACATATTTTCGAAGAGGGGCATGAAGGGAAAATCTGTTAGCGGGATGAACTACTATGCGTGTTTGTCAATTTTATCTTTGTTAATCCTGACGCCATTTGCATTTGCTGTGGAGGGACCACAGTTATGGGCTGATGGATGGCAAAGAGCAATCTCTCAAATTGGACCTCATTTCGTTTGGTGGGTTGCAGCACAAAGTATATTCTACCATCTCTATAACCAGGTGTCTTACATGTCCTTGGATGAGATTTCTCCCTTGACGTTTAGCATCGGAAACACCATGAAACGTATATCAGTCATAGTTTCTTCCATCATTATCTTCCGCACACCTGTGCAACCAGTCAACGCTCTCGGAGCTGCCATTGCAATTCTTGGAACCTTCATATATTCGCAGGCAAAGCAATGA 1191 46.43 MICTVKQSARAINCSDGAIRSKISVPSQRSSFLPPLPVQKPRNSALSVHKAVHVSSLENFGSLGVRKANLIKCEAYKAERSQPIDSSIELPQSQVPSEAAKKVKIGSYFALWWALNVVFNIYNKKVLNAYPYPWLTSTLSLAAGSLIMLISWMTRIAEAPKTDFEFWKSLFPVAIAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRLLLGETFPLPVYLSLLPIIGGCALAAVTELNFNMTGFMGAMISNLAFVFRNIFSKRGMKGKSVSGMNYYACLSILSLLILTPFAFAVEGPQLWADGWQRAISQIGPHFVWWVAAQSIFYHLYNQVSYMSLDEISPLTFSIGNTMKRISVIVSSIIIFRTPVQPVNALGAAIAILGTFIYSQAKQ 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36492485 36496672 - Maker00017724 Lcy9g1211 642327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1211 396 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 104 395 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Lcy9g1211 396 SUPERFAMILY Multidrug resistance efflux transporter EmrE 146 239 - -
Lcy9g1211 396 Pfam Triose-phosphate Transporter family 104 392 IPR004853 -
Lcy9g1211 396 PANTHER SOLUTE CARRIER FAMILY 35 99 395 IPR050186 GO:0005794(PANTHER)|GO:0015120(PANTHER)|GO:0015297(PANTHER)|GO:0071917(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1868 Lcy-Chr11:42446244 Lcy9g1211 Lcy-Chr9:36492485 4.49E-107 dispersed
Lcy5g2217 Lcy-Chr5:45175789 Lcy9g1211 Lcy-Chr9:36492485 3.57E-46 dispersed
Lcy7g0333 Lcy-Chr7:2808804 Lcy9g1211 Lcy-Chr9:36492485 1.53E-64 dispersed
Lcy6g1394 Lcy-Chr6:20446449 Lcy9g1211 Lcy-Chr9:36492485 4.56E-223 transposed
Lcy1g0432 Lcy-Chr1:3821619 Lcy9g1211 Lcy-Chr9:36492485 1.56E-197 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1211 K15283 - csv:101220046 730.324