Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1218 ATGGCAAAATTAGGGTTTGCATTTGGGGCTTTGATGTGTGTAATGATGTTGTTGCAGAAAGGTGATGGCACTGAGTTCACAGTTGGAGGAGCAAAGGGTTGGGGAGTTTCAGTGGCACAAAGCTATAATCAATGGGCAGAAGCCAACAGGTTTCAAATTGGAGACTCTTTAGTTTTCAACTATGCTGCTGATCAAGACTCAGTGCTTCAAGTAACCCAAGATGCCTACAACAACTGCAGCATCCAATCTCCAATAAAACAGTATTCTGATGGCCACACTGTTTTCCAATTTGACAAATCTGGGCCTTACTATTTTATCAGTGGAAACAAAGACAATTGCCTCAAAAATCAGAAGCTGGTGGTGGTTGTGTTGGCTGATAGAACCAATTCAAGTTCTAATCAGACCAGCTCTCTGCCTCCTCCAACCTCTGCTCCATCTCCATCCCCATTTCCTTCTCCCTCAAATTCAACTGAGACAACACCTTCTCCTGCACCGGCAAATGATCAAACCGGCGTGCCTTCTCCTCCACCGTCGGGGTCGACTGAGATCACCCCGTCTCCGCCACCTGCTGAGGAAACCAACCCACCTCCTCCGCCTGCTGAGGAATTCAATCCATCTCCGGCGCCTGCTGTGGAAGAGTCTCCGTCTCCACCTCCAAGGACGGTTGAGATCAACCCTGCACCTCCGAGTTTCGGATCTTCGATCATCCCGAGCAGCATTGGCTCCATTGGAGCATTCGTTGCTGCTGTTATCTTAGCTTTCTAA 765 48.5 MAKLGFAFGALMCVMMLLQKGDGTEFTVGGAKGWGVSVAQSYNQWAEANRFQIGDSLVFNYAADQDSVLQVTQDAYNNCSIQSPIKQYSDGHTVFQFDKSGPYYFISGNKDNCLKNQKLVVVVLADRTNSSSNQTSSLPPPTSAPSPSPFPSPSNSTETTPSPAPANDQTGVPSPPPSGSTEITPSPPPAEETNPPPPPAEEFNPSPAPAVEESPSPPPRTVEINPAPPSFGSSIIPSSIGSIGAFVAAVILAF 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36596984 36599378 - Maker00017611 Lcy9g1218 642334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1218 254 MobiDBLite consensus disorder prediction 168 225 - -
Lcy9g1218 254 FunFam Early nodulin-like protein 1 23 128 - -
Lcy9g1218 254 SUPERFAMILY Cupredoxins 23 124 IPR008972 -
Lcy9g1218 254 ProSiteProfiles Phytocyanin domain profile. 24 125 IPR003245 GO:0009055(InterPro)
Lcy9g1218 254 MobiDBLite consensus disorder prediction 130 238 - -
Lcy9g1218 254 PANTHER BLUE COPPER PROTEIN 15 158 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Lcy9g1218 254 Gene3D - 23 129 IPR008972 -
Lcy9g1218 254 MobiDBLite consensus disorder prediction 140 158 - -
Lcy9g1218 254 Pfam Plastocyanin-like domain 34 116 IPR003245 GO:0009055(InterPro)
Lcy9g1218 254 CDD OsENODL1_like 24 124 IPR041846 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g1385 Lcy-Chr6:20193381 Lcy9g1218 Lcy-Chr9:36596984 2.70E-53 dispersed
Lcy9g1218 Lcy-Chr9:36596984 Lcy8g1549 Lcy-Chr8:42135098 1.20E-33 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1218 - - - 0.0