Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1218 ATGGCAAAATTAGGGTTTGCATTTGGGGCTTTGATGTGTGTAATGATGTTGTTGCAGAAAGGTGATGGCACTGAGTTCACAGTTGGAGGAGCAAAGGGTTGGGGAGTTTCAGTGGCACAAAGCTATAATCAATGGGCAGAAGCCAACAGGTTTCAAATTGGAGACTCTTTAGTTTTCAACTATGCTGCTGATCAAGACTCAGTGCTTCAAGTAACCCAAGATGCCTACAACAACTGCAGCATCCAATCTCCAATAAAACAGTATTCTGATGGCCACACTGTTTTCCAATTTGACAAATCTGGGCCTTACTATTTTATCAGTGGAAACAAAGACAATTGCCTCAAAAATCAGAAGCTGGTGGTGGTTGTGTTGGCTGATAGAACCAATTCAAGTTCTAATCAGACCAGCTCTCTGCCTCCTCCAACCTCTGCTCCATCTCCATCCCCATTTCCTTCTCCCTCAAATTCAACTGAGACAACACCTTCTCCTGCACCGGCAAATGATCAAACCGGCGTGCCTTCTCCTCCACCGTCGGGGTCGACTGAGATCACCCCGTCTCCGCCACCTGCTGAGGAAACCAACCCACCTCCTCCGCCTGCTGAGGAATTCAATCCATCTCCGGCGCCTGCTGTGGAAGAGTCTCCGTCTCCACCTCCAAGGACGGTTGAGATCAACCCTGCACCTCCGAGTTTCGGATCTTCGATCATCCCGAGCAGCATTGGCTCCATTGGAGCATTCGTTGCTGCTGTTATCTTAGCTTTCTAA 765 48.5 MAKLGFAFGALMCVMMLLQKGDGTEFTVGGAKGWGVSVAQSYNQWAEANRFQIGDSLVFNYAADQDSVLQVTQDAYNNCSIQSPIKQYSDGHTVFQFDKSGPYYFISGNKDNCLKNQKLVVVVLADRTNSSSNQTSSLPPPTSAPSPSPFPSPSNSTETTPSPAPANDQTGVPSPPPSGSTEITPSPPPAEETNPPPPPAEEFNPSPAPAVEESPSPPPRTVEINPAPPSFGSSIIPSSIGSIGAFVAAVILAF 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36596984 36599378 - Maker00017611 Lcy9g1218 642334

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1218 254 MobiDBLite consensus disorder prediction 168 225 - -
Lcy9g1218 254 FunFam Early nodulin-like protein 1 23 128 - -
Lcy9g1218 254 SUPERFAMILY Cupredoxins 23 124 IPR008972 -
Lcy9g1218 254 ProSiteProfiles Phytocyanin domain profile. 24 125 IPR003245 GO:0009055(InterPro)
Lcy9g1218 254 MobiDBLite consensus disorder prediction 130 238 - -
Lcy9g1218 254 PANTHER BLUE COPPER PROTEIN 15 158 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Lcy9g1218 254 Gene3D - 23 129 IPR008972 -
Lcy9g1218 254 MobiDBLite consensus disorder prediction 140 158 - -
Lcy9g1218 254 Pfam Plastocyanin-like domain 34 116 IPR003245 GO:0009055(InterPro)
Lcy9g1218 254 CDD OsENODL1_like 24 124 IPR041846 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1218 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g1385 Lcy-Chr6:20193381 Lcy9g1218 Lcy-Chr9:36596984 2.70E-53 dispersed
Lcy9g1218 Lcy-Chr9:36596984 Lcy8g1549 Lcy-Chr8:42135098 1.20E-33 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy9g1218 . 11 140 Phytocyanin Superfamily AT3G20570 58.0 1.9e-37 153.3
Lcy5g2445 . 10 161 Phytocyanin Superfamily AT1G48940 51.6 9.8e-38 154.1
Lcy10g0682 . 28 174 Phytocyanin Superfamily AT3G01070 52.7 9.2e-38 154.1
Lcy10g0682 . 29 184 Phytocyanin Superfamily AT5G15350 53.2 1.1e-46 183.7
Lcy5g2445 . 7 134 Phytocyanin Superfamily AT3G18590 58.1 8.8e-37 151.0
Lcy8g1549 . 16 130 Phytocyanin Superfamily AT4G32490 58.3 1.0e-36 151.0
Lcy8g1549 . 16 130 Phytocyanin Superfamily AT4G32490 58.3 1.0e-36 151.0
Lcy5g2445 . 7 134 Phytocyanin Superfamily AT3G18590 58.1 8.8e-37 151.0
Lcy5g2445 . 10 161 Phytocyanin Superfamily AT1G48940 51.6 9.8e-38 154.1
Lcy9g1218 . 11 140 Phytocyanin Superfamily AT3G20570 58.0 1.9e-37 153.3
Lcy10g0682 . 28 174 Phytocyanin Superfamily AT3G01070 52.7 9.2e-38 154.1
Lcy10g0682 . 29 184 Phytocyanin Superfamily AT5G15350 53.2 1.1e-46 183.7
Lcy8g2041 . 48 263 Phytocyanin Superfamily AT1G08500 54.1 4.6e-56 215.3
Lcy2g1118 . 29 144 Phytocyanin Superfamily AT2G27035 57.8 6.9e-38 154.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003173 1 2 0 0 0 2 3 2 2 2 2 2 3 2 2 2 2 0 0 2 2 2 2 2 2 3 2 2 2 1 51