Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1226 ATGGTATCCCCCGAAAATCCCAATTGGCTGTTTGATTATGGTTTGATCGACGACATCCCTGTAACGGATGCGAATTTCCCAGTCACGAGTTCAAGCTTCTCGTGGGCTGTTCAACCCTTCAACGGCACCCCTGATGTCGGTGTTTACGTAATACTTCCCGGATTTTCGTCTACATGCCGAATTATGGGAGGTGGAGTGGCCCTTTTATTGCCTGTGGAAGTTGATGGATCATTGGCAGATCTAGATGGCCGTCTAGAATCTGGCTCAAAGAAGAGTCTGATTCTTTTGTTGAGACATAAGGCATTTTACCCTGTGCACAGCACTTGGGATGCTGGTTTACTAATCGGTTGTGAGTTAACTGAAGAGCATTTGGTTTTGTGGCTTGGTTGGGAGGTCAGATCTGATTCATGTAGTGCATCAAGCTCCAAAGCATGTAGGGAGAAATTGCGGAGGGATAGGCTCAATGACAAGTTTCTGGAACTGGGCTCCATCTTGGATCCTGGAAGACCACCCAAAACTGACAAGGCTGCAATTTTAGTCGATGCTGTCCGAATGGTTAATCAGTTGCGTGGCGAAGCCCAGAAACTAAAGGAATCAAATTCAAGTCTCCAAGAGAAGATTAAAGAGTTGAAGGCCGAGAAGAATGAGCTCCGTGACGAGAAACAGAGGCTCAAGGCAGATAAGGAGAAGCTAGAGCAGCAAATGAAGTCCATGCATGCTCAACCTGGCTTCTTACCTCCACCAATCCCCACATTTGCTGCTCAGGGTCAAGCTCCTGGCAGTAAGTTAGTTCCATTCATTGGTTACCATCCAGGAGTTGCCATGTGGCAGTTCATGCCGCCTGCAGCGGTGGACACGTCACAGGACCACGTACTCCGGCCACCAGTCGCCTAA 894 48.43 MVSPENPNWLFDYGLIDDIPVTDANFPVTSSSFSWAVQPFNGTPDVGVYVILPGFSSTCRIMGGGVALLLPVEVDGSLADLDGRLESGSKKSLILLLRHKAFYPVHSTWDAGLLIGCELTEEHLVLWLGWEVRSDSCSASSSKACREKLRRDRLNDKFLELGSILDPGRPPKTDKAAILVDAVRMVNQLRGEAQKLKESNSSLQEKIKELKAEKNELRDEKQRLKADKEKLEQQMKSMHAQPGFLPPPIPTFAAQGQAPGSKLVPFIGYHPGVAMWQFMPPAAVDTSQDHVLRPPVA 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36715435 36718293 - Maker00017929 Lcy9g1226 642342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1226 297 CDD bZIP 204 236 - -
Lcy9g1226 297 FunFam Transcription factor bHLH104 141 222 - -
Lcy9g1226 297 Coils Coil 179 241 - -
Lcy9g1226 297 PANTHER BHLH TRANSCRIPTION FACTOR 9 297 IPR044818 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro)
Lcy9g1226 297 Pfam Helix-loop-helix DNA-binding domain 142 190 IPR011598 GO:0046983(InterPro)
Lcy9g1226 297 CDD bHLH_AtILR3_like 146 218 - -
Lcy9g1226 297 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 138 189 IPR011598 GO:0046983(InterPro)
Lcy9g1226 297 Gene3D - 141 218 IPR036638 GO:0046983(InterPro)
Lcy9g1226 297 SMART finulus 144 195 IPR011598 GO:0046983(InterPro)
Lcy9g1226 297 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 138 208 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0629 Lcy-Chr1:5400616 Lcy9g1226 Lcy-Chr9:36715435 2.42E-09 dispersed
Lcy8g1211 Lcy-Chr8:38484704 Lcy9g1226 Lcy-Chr9:36715435 3.40E-12 dispersed
Lcy6g1353 Lcy-Chr6:18984908 Lcy9g1226 Lcy-Chr9:36715435 1.33E-78 transposed
Lcy11g1655 Lcy-Chr11:40403124 Lcy9g1226 Lcy-Chr9:36715435 3.21E-20 transposed
Lcy5g1978 Lcy-Chr5:42725913 Lcy9g1226 Lcy-Chr9:36715435 3.22E-36 wgd
Lcy8g1461 Lcy-Chr8:41267529 Lcy9g1226 Lcy-Chr9:36715435 7.52E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20648 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1226 - - - 0.0