Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy9g1226 | ATGGTATCCCCCGAAAATCCCAATTGGCTGTTTGATTATGGTTTGATCGACGACATCCCTGTAACGGATGCGAATTTCCCAGTCACGAGTTCAAGCTTCTCGTGGGCTGTTCAACCCTTCAACGGCACCCCTGATGTCGGTGTTTACGTAATACTTCCCGGATTTTCGTCTACATGCCGAATTATGGGAGGTGGAGTGGCCCTTTTATTGCCTGTGGAAGTTGATGGATCATTGGCAGATCTAGATGGCCGTCTAGAATCTGGCTCAAAGAAGAGTCTGATTCTTTTGTTGAGACATAAGGCATTTTACCCTGTGCACAGCACTTGGGATGCTGGTTTACTAATCGGTTGTGAGTTAACTGAAGAGCATTTGGTTTTGTGGCTTGGTTGGGAGGTCAGATCTGATTCATGTAGTGCATCAAGCTCCAAAGCATGTAGGGAGAAATTGCGGAGGGATAGGCTCAATGACAAGTTTCTGGAACTGGGCTCCATCTTGGATCCTGGAAGACCACCCAAAACTGACAAGGCTGCAATTTTAGTCGATGCTGTCCGAATGGTTAATCAGTTGCGTGGCGAAGCCCAGAAACTAAAGGAATCAAATTCAAGTCTCCAAGAGAAGATTAAAGAGTTGAAGGCCGAGAAGAATGAGCTCCGTGACGAGAAACAGAGGCTCAAGGCAGATAAGGAGAAGCTAGAGCAGCAAATGAAGTCCATGCATGCTCAACCTGGCTTCTTACCTCCACCAATCCCCACATTTGCTGCTCAGGGTCAAGCTCCTGGCAGTAAGTTAGTTCCATTCATTGGTTACCATCCAGGAGTTGCCATGTGGCAGTTCATGCCGCCTGCAGCGGTGGACACGTCACAGGACCACGTACTCCGGCCACCAGTCGCCTAA | 894 | 48.43 | MVSPENPNWLFDYGLIDDIPVTDANFPVTSSSFSWAVQPFNGTPDVGVYVILPGFSSTCRIMGGGVALLLPVEVDGSLADLDGRLESGSKKSLILLLRHKAFYPVHSTWDAGLLIGCELTEEHLVLWLGWEVRSDSCSASSSKACREKLRRDRLNDKFLELGSILDPGRPPKTDKAAILVDAVRMVNQLRGEAQKLKESNSSLQEKIKELKAEKNELRDEKQRLKADKEKLEQQMKSMHAQPGFLPPPIPTFAAQGQAPGSKLVPFIGYHPGVAMWQFMPPAAVDTSQDHVLRPPVA | 297 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 36715435 | 36718293 | - | Maker00017929 | Lcy9g1226 | 642342 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy9g1226 | 297 | CDD | bZIP | 204 | 236 | - | - | |
Lcy9g1226 | 297 | FunFam | Transcription factor bHLH104 | 141 | 222 | - | - | |
Lcy9g1226 | 297 | Coils | Coil | 179 | 241 | - | - | |
Lcy9g1226 | 297 | PANTHER | BHLH TRANSCRIPTION FACTOR | 9 | 297 | IPR044818 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro) | |
Lcy9g1226 | 297 | Pfam | Helix-loop-helix DNA-binding domain | 142 | 190 | IPR011598 | GO:0046983(InterPro) | |
Lcy9g1226 | 297 | CDD | bHLH_AtILR3_like | 146 | 218 | - | - | |
Lcy9g1226 | 297 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 138 | 189 | IPR011598 | GO:0046983(InterPro) | |
Lcy9g1226 | 297 | Gene3D | - | 141 | 218 | IPR036638 | GO:0046983(InterPro) | |
Lcy9g1226 | 297 | SMART | finulus | 144 | 195 | IPR011598 | GO:0046983(InterPro) | |
Lcy9g1226 | 297 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 138 | 208 | IPR036638 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy1g0629 | Lcy-Chr1:5400616 | Lcy9g1226 | Lcy-Chr9:36715435 | 2.42E-09 | dispersed | |
Lcy8g1211 | Lcy-Chr8:38484704 | Lcy9g1226 | Lcy-Chr9:36715435 | 3.40E-12 | dispersed | |
Lcy6g1353 | Lcy-Chr6:18984908 | Lcy9g1226 | Lcy-Chr9:36715435 | 1.33E-78 | transposed | |
Lcy11g1655 | Lcy-Chr11:40403124 | Lcy9g1226 | Lcy-Chr9:36715435 | 3.21E-20 | transposed | |
Lcy5g1978 | Lcy-Chr5:42725913 | Lcy9g1226 | Lcy-Chr9:36715435 | 3.22E-36 | wgd | |
Lcy8g1461 | Lcy-Chr8:41267529 | Lcy9g1226 | Lcy-Chr9:36715435 | 7.52E-49 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20648 | None | None | None | None | Lcy | TF |
Pathway information
