Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1230 ATGACATTTCGACGACTTATGGGTGTTGCAAGAAGGAGATGTTTGGTTCTTCTTGTGATTCTCATCTGTGCTTCTTTAGCAACTTGCTTGAAGGACCACGAGGAAGAGGAACTGATTCTGAGTCAACTAGCTGACCCAATTACTGGGGATGTCAACACAGAGATGGCTGAGCTGTTATTGGTTAAGTGCAACTTGGATTTGTTTCAGTTGAAGGAAGCTGTAGATGGTACTGACTCATGCTCTGAAGAAAGTTCCGGAAGCACAAATGAAAATAATTTTGAATGTCGGATGCTGACTAAAGAAAAAACAAACAGAATGCTAGGTGCCATGCATCCACAGATGAAGCAGACTCTTTTAGATTGTTTAAGAAAGAATTTTCACGTCTCTGGGAAAGACTACAATTCTGAAGCTTGGTACACCAGATATCTGGAGTCATTGATTTTTATGCCTGGTAGTCTTAGAAGGAAGTTAAGTTCGAGATGGCTTCAAAGTGCTAAAGAAGCTTCGGCTCCTGAATCTTCACCCTCTTCTAAATCACCAAATTCTGATGATTCAAGCCAATCTGCTGATGAAAAACCTTCAAGAAAAGCTTCTAGCACAAGTGGTCAAAAAGAAAAGAAATCTAATAATAAGCAAACAGTTGTCATTGCTGTTGTTGTAACAGCAACAGTGACTTTTATTATTGTAGCTCTGCTCTTTTTGTGCTTTAATAAGAGTGGCTCCAGAGTGAAGCAAAATGATGAGAATCATGAAAGGCCTCTCCTAAGCTTGAGCTTAAGTTCTTCGCCCAAGTATTCTGCCTTTGGTTCTATTAAGGAAGACAAGCTCATGAATCAATCATCTAGCTTGAGTCACCACCAGAGAGCTCCATCTTTGGATGGTAGCCTGCACATTGGCTCTGATGGTGCACGTACTTCAATTCAGGGACCTCCATCTTTTGGAGCTGCTGGAATTGCCAATAATTCATCTTTTGGATCAACGTATATGGCTGGCGGTACTAATAACTTGCCACCTCCTCCTGGAGCAGTGCGAGTCAACTCGGAGATTATACCTCCTCTAAAGCCTCCTCCTGGCAGGGCTGTTCCCCTGCCTCCTGAACCCCCTTCGTCTTTTAAGCCTCCATCAAGCATAGCTAGTCCTCCTCCTCCTCCTCCACCTCCTGCGCCATCAGCAGGACCACCACCACCACCACCACCAAGGCCTCCTGGAAACTCAGGTCATGCTCCTGGACCTCCTCCACCTCCACCACCTGTCCGAGGCAACAAGGCAGGCCCAGGCCCTCCCCCACCCCCACCTCCCAAAAGTGGTGCTGGTCCCCCTAGGCCACCTCCATTAGCACCCAAAGGTGCAAATCCACCTCGACCTCCCAAACCTTTTGGAAACTCTGCTTCAGGTGATGATGAAAGTATGGATGATGGTATTCCCAAAGCCAAATTGAAACCATTTTTCTGGGACAAAGTTCTTGCAAACCCTGATCATTCCATGGTCTGGCATCAGTTAAAAGCAGGGTCTTTCCAATTCAACGAGGAGATGATAGAAACTCTTTTTGGATATACACCCGTTGATAAAACCAAATGTGAGGGCAAGAAGGAGTCATCATCACAAGATCCTGCGCATCAGTATATTCAGATCATTGATTCAAAGAAAGCCCAAAATCTGTCCATTCTTTTGCGGGCACTAAATGTGACAAAAGAGGAAGTTTGTGATGCGCTTCATGAAGGAGGTGAGCTTCCTTCTGAACTTCTCGAGAACTTACTGAGGATGGCACCAACACCAGAGGAAGAACTCAAGCTTAGACTGTTTAGTGGGGAACTTTCTCAACTTGGAACTGCTGAGCGGTTCCTTAAATCTTTGGTTGATATTCCATTTGCTTTCAAAAGGTTGGAATCACTGCTTTTCATGGGCACTCTTCAGGAGGACATTACCATCACTAAAGAGTCCTTTGTTAACTTGGAGATTGCTTGCAAGGAACTTCGAAGCAGCAGGCTGTTCCTCAAACTTCTAGAAGCTGTTCTTAAGACGGGTAATCGGATGAACGTTGGAACTTTTCGAGGTGGTGCACAAGCATTCAAATTGGACACTCTTTTAAAATTGTCAGACGTGAAAGGAAAAGATGGCAAGACTACACTATTGCACTTTGTAGTCCTGGAGATAATTCGCACAGAAGGGATAAGAGCTGCCAGGAATGCCACAGGAAGCCAGAGCTTCTCAAGCACCTCATCAAACGATCTGCTGGACGGAATTTCTAACGACACAGAAGAGCATTACCGGAGCTTGGGTCTTCAGGTCGTCTCGGGGTTGAGTGGTGAACTTCAGAACGTGAAGAAAGCAGCAACCATAGATGCTGATGCCTTGACTGGAACTGTTTCCAAACTTGGCCATGCACTGTTAAAGACAAGAGACTTTGTGAACAAAGACATGCAGGGTCTCGATGAAGATAGTCGATTTCACGAAATCGTGAAAAGCTTTGTGCAGACTGCTGAGGTCGATATCATGGCCCTCCTGGAAGAAGAAAAAAGAATCATGGAATTAGTGAAAAGCACCGGCGATTACTTCCATGGAAATGCAGGAAAAGACGAGGGCTTACGGTTGTTTGTAATAGTACGAGATTTCTTAATAATGTTAGATAAGACGTGCCGAGAGGTAAAGGATGCACAGAAAAAGCAGGCAAAGGGACACAGAAAGGCAGCATCGTCTTCTGATATCAATCCCCCTCCTTCTGATATCAATCCCCCTCCTTCAAGTTCAACTCCAGTTGTTTCTGATACCAATCATCCCCCTTCAAGTTCAACTCCAGTTGTTTCTGATACCAATCATCCCCCTTCTGATATCAAACCCCCTCCTTCTGATATCTATCCCCCGCCCCCGCCCCCGCCCCCGCCCCCGCCTTCAGCTCCAGTTGTTTCTGATCTACGACACCCGCCTTCTCCCGATCTGAATCAGCTAATCTTCCCAGCAATTATTGAACGTCGGGTGGGTGACTCAAGTTCAGATGATGAGAGTCCATAG 3009 45.53 MTFRRLMGVARRRCLVLLVILICASLATCLKDHEEEELILSQLADPITGDVNTEMAELLLVKCNLDLFQLKEAVDGTDSCSEESSGSTNENNFECRMLTKEKTNRMLGAMHPQMKQTLLDCLRKNFHVSGKDYNSEAWYTRYLESLIFMPGSLRRKLSSRWLQSAKEASAPESSPSSKSPNSDDSSQSADEKPSRKASSTSGQKEKKSNNKQTVVIAVVVTATVTFIIVALLFLCFNKSGSRVKQNDENHERPLLSLSLSSSPKYSAFGSIKEDKLMNQSSSLSHHQRAPSLDGSLHIGSDGARTSIQGPPSFGAAGIANNSSFGSTYMAGGTNNLPPPPGAVRVNSEIIPPLKPPPGRAVPLPPEPPSSFKPPSSIASPPPPPPPPAPSAGPPPPPPPRPPGNSGHAPGPPPPPPPVRGNKAGPGPPPPPPPKSGAGPPRPPPLAPKGANPPRPPKPFGNSASGDDESMDDGIPKAKLKPFFWDKVLANPDHSMVWHQLKAGSFQFNEEMIETLFGYTPVDKTKCEGKKESSSQDPAHQYIQIIDSKKAQNLSILLRALNVTKEEVCDALHEGGELPSELLENLLRMAPTPEEELKLRLFSGELSQLGTAERFLKSLVDIPFAFKRLESLLFMGTLQEDITITKESFVNLEIACKELRSSRLFLKLLEAVLKTGNRMNVGTFRGGAQAFKLDTLLKLSDVKGKDGKTTLLHFVVLEIIRTEGIRAARNATGSQSFSSTSSNDLLDGISNDTEEHYRSLGLQVVSGLSGELQNVKKAATIDADALTGTVSKLGHALLKTRDFVNKDMQGLDEDSRFHEIVKSFVQTAEVDIMALLEEEKRIMELVKSTGDYFHGNAGKDEGLRLFVIVRDFLIMLDKTCREVKDAQKKQAKGHRKAASSSDINPPPSDINPPPSSSTPVVSDTNHPPSSSTPVVSDTNHPPSDIKPPPSDIYPPPPPPPPPPPSAPVVSDLRHPPSPDLNQLIFPAIIERRVGDSSSDDESP 1002
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36767636 36776179 + Maker00017661 Lcy9g1230 642346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1230 1002 SMART it6_source 469 889 IPR015425 -
Lcy9g1230 1002 MobiDBLite consensus disorder prediction 941 970 - -
Lcy9g1230 1002 MobiDBLite consensus disorder prediction 166 196 - -
Lcy9g1230 1002 Gene3D Formin, FH2 domain 474 903 IPR042201 -
Lcy9g1230 1002 MobiDBLite consensus disorder prediction 166 210 - -
Lcy9g1230 1002 SUPERFAMILY Formin homology 2 domain (FH2 domain) 540 896 - -
Lcy9g1230 1002 MobiDBLite consensus disorder prediction 914 938 - -
Lcy9g1230 1002 MobiDBLite consensus disorder prediction 885 982 - -
Lcy9g1230 1002 ProSiteProfiles Formin homology-2 (FH2) domain profile. 469 901 IPR015425 -
Lcy9g1230 1002 MobiDBLite consensus disorder prediction 350 459 - -
Lcy9g1230 1002 MobiDBLite consensus disorder prediction 278 314 - -
Lcy9g1230 1002 PANTHER FORMIN-RELATED 411 906 IPR027643 GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro)
Lcy9g1230 1002 MobiDBLite consensus disorder prediction 330 474 - -
Lcy9g1230 1002 Pfam Formin Homology 2 Domain 475 875 IPR015425 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy7g0217 Lcy-Chr7:1912084 Lcy9g1230 Lcy-Chr9:36767636 8.88E-82 dispersed
Lcy7g1391 Lcy-Chr7:21760863 Lcy9g1230 Lcy-Chr9:36767636 8.36E-101 dispersed
Lcy8g0729 Lcy-Chr8:26920107 Lcy9g1230 Lcy-Chr9:36767636 7.79E-112 dispersed
Lcy9g1230 Lcy-Chr9:36767636 Lcy2g1813 Lcy-Chr2:30170591 1.35E-15 dispersed
Lcy8g1463 Lcy-Chr8:41277213 Lcy9g1230 Lcy-Chr9:36767636 4.89E-132 transposed
Lcy8g1462 Lcy-Chr8:41274218 Lcy9g1230 Lcy-Chr9:36767636 9.45E-36 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1230 K28090 - csv:101213072 848.966