Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1232 ATGCCAACAGTTTGGTTTTCTTTGAAAAAGTCCTTCCCTTGCAAACCAGAGCCATCAGAAGTCTATGATCCAAAGTGCAGGAAACAACTCAACACAATCACAACAAAGAAAGCAGCCAAGAAGTCAGGGTGTTCTTCAGGAAGGTCAGGCTGTTCAAGGTCCATAGCAAATCTCAAAGATGTCATCCATGGAAGCAAGAGGCACATGGAAAAGCCGCCAATATGCAGCCCGAGGTCGATCGGTAGCAGCGAGTTCCTCAACCCCATTGCTCATGAAGTAATACTGAGCAACTCAAAGTGTGAGCTCAAGATCACTGGCTTTGGAGGCTTCCACCAAGAGGGTGTGGGAAATGCTGGCAATGGAGGAGGCGGGGGCGGGAATTCGCCATTTTTAGGTACTCTAAGGCCCGGGACGCCCGGTCCGGGGGAGAACATTGTTAACAACTCCAATTCTCCTTTTAGTACTACCTCCATATCTGCTGCAAGAAAGCATCCTTCTCTTTTATCATATAGAGATGGTTCTGCAGCTGGGAGTACTGGTAAATCTAAGGGGGCAGGGGAAGTTCATACAAGCAAAAGGTTCTCTCCGCTAACCGAATCTAACGGTAATACGTTTTCGGCGGTTACTTGCCATAAATGTGGAGAGCAGTTCTGCAAATTGGAGGCTGTTGAGTCTCACCATCTTTCCAAGCATGCTGTTACTGAGCTTGTGGAAGGCGATTCATCGAGGAAAATCGTCGAAATAATATGTCGAACGAACTTTTTGAAGTCCGAGAACAATGGCAACCGAATCGAACGAGTTTTCAAAGTTCACAATATGCAGAAAACATTAGCTGGATTTGAAGAATACAGGGAAATGGTGAAGATCAAGGCAAGCAAGCTTTCGAAGAAACATCCTCGATGCCTCGCCGATGGGAACGAGCTACTGAGGTTTTACGGGACGACTTTAGCCTGCTCTCTTGGACTAAATGGCTCCTCCAGCCTCTGCATATCACAGAAATGCAGTGTCTGCAGAATCATAAGGAATGGTTTCTCAGCAAAGAAGGATATGAAAGAAGAAGTAGGAGTTTTTACGACTTCGACGAGCGGAAAAGCTTTCGAAACCATCGAAACCGAGAAAGAAATCTCGGTAAAGAAAGCATTGATAATCTGCAGAGTGATTGCAGGGAGGGTTCATAGGCCTTTGGAGAATATACAAGATATGGTTGGCCAAGCAGGTTTTGATTCTTTGGCTGGCAAAGTGGGATTACATTCTAACATTGAAGAGCTTTATTTGCTCAATCCTAGAGCTTTGCTTCCTTGTTTTATTGTAATTTGCAAACCATGA 1326 45.17 MPTVWFSLKKSFPCKPEPSEVYDPKCRKQLNTITTKKAAKKSGCSSGRSGCSRSIANLKDVIHGSKRHMEKPPICSPRSIGSSEFLNPIAHEVILSNSKCELKITGFGGFHQEGVGNAGNGGGGGGNSPFLGTLRPGTPGPGENIVNNSNSPFSTTSISAARKHPSLLSYRDGSAAGSTGKSKGAGEVHTSKRFSPLTESNGNTFSAVTCHKCGEQFCKLEAVESHHLSKHAVTELVEGDSSRKIVEIICRTNFLKSENNGNRIERVFKVHNMQKTLAGFEEYREMVKIKASKLSKKHPRCLADGNELLRFYGTTLACSLGLNGSSSLCISQKCSVCRIIRNGFSAKKDMKEEVGVFTTSTSGKAFETIETEKEISVKKALIICRVIAGRVHRPLENIQDMVGQAGFDSLAGKVGLHSNIEELYLLNPRALLPCFIVICKP 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36782845 36784887 + Maker00017845 Lcy9g1232 642348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1232 441 FunFam C2H2-like zinc finger protein 232 440 - -
Lcy9g1232 441 SUPERFAMILY ADP-ribosylation 233 440 - -
Lcy9g1232 441 Gene3D - 237 440 - -
Lcy9g1232 441 MobiDBLite consensus disorder prediction 142 157 - -
Lcy9g1232 441 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 3 440 - -
Lcy9g1232 441 MobiDBLite consensus disorder prediction 118 157 - -
Lcy9g1232 441 ProSitePatterns Zinc finger C2H2 type domain signature. 210 231 IPR013087 -
Lcy9g1232 441 MobiDBLite consensus disorder prediction 169 195 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g2062 Lcy-Chr5:43719753 Lcy9g1232 Lcy-Chr9:36782845 8.29E-77 dispersed
Lcy9g1232 Lcy-Chr9:36782845 Lcy9g2259 Lcy-Chr9:47104776 4.82E-57 dispersed
Lcy1g0406 Lcy-Chr1:3629583 Lcy9g1232 Lcy-Chr9:36782845 2.46E-77 wgd
Lcy6g1271 Lcy-Chr6:15869757 Lcy9g1232 Lcy-Chr9:36782845 1.08E-205 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20649 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1232 - - - 0.0