Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1234 ATGGACTCTCATCAACTGTTTGGATTTGGGGTCAATAGTGCAGCTGCAGGTCTTTCTTATACATCGTCTTATTCCTCTGTTCCATCTCTACCTAATAGTTTGCTTGGACCCTTGAAATTTAATCTGAGAAATTCCCCGGTTTCGCCGTCGCTTTTTTCGTCGCATTTCGAATCGGATTCCTTTACCACGACTGTGAGTGATAGTCAGGATCAGAGGAACTCCCCTGAGAATCTCTCTGGACTTAGCCCTTCTTGTAATTCCTCGTTTGAAACGAATAGCTTTAATCAAATAGCCTCGTCGTATTTGGATCATTTTGAGGACGAGAGTCGACAAGTCTATTCGGGGTCGAATGCGTTTCTTTACGATGGATGCTCGACCGAGAACATAAGCTTCGCGTTGAAACGATTGGAGAGTGCTCTGATGGGGCCGGATAATGAGGAAGTTGTGAGCAAGCCTGATGCTTCGTTTGGAGAGAGTAGCAGGCCACAGATGATGGGGCAGAGGTCCTACTCATGGAGCCAAGATCGACGTGGTGGGTCGTATCTTGTCCAGTCTCAGACGTCGCCGCCGGTGTCGAGAAGCCAGCAATCTGAAGCTGTTCACTTGGGGAAACGCCAAAAATCGATGGATGAATCGATGTTGCAGCAGGGAGGATTTCCATCGGATAATTTGAAGGAGTTGCTGATTGCTTGTGCAAAAGCTTTAGCTGAAAACAGGATGGAGGATTTTGATAACTTGGTTGCCACAGCAAGAGGTGCTGTGTCTATTAGCGGAGAACCGATCCAACGTCTCGGCGCTTACATGGTGGAAGGATTGGTGGCGAGGAAGGAGGAATCGGGGGCGAATATATACCGTGCTCTAAACTGTAGAGAGCCTGCAAGTAATGATTTGCTATCTTATATGCATATGCTATATGAAATCTGCCCCTACTTGAAGTTCGGTTACATGGCAGCGAACGGGGCGATTGCCGAAGCCTGCAGAAACGAAGACCGCATCCACATCATAGACTTCCAGATTACTCAGGGGACGCAATGGTTAACTCTTCTTCAGGCACTTGCAGCAAGGCCCAGTGGGGCTCCCCATGTGAGGATAACTGGTATCGACGACCCTGTTTCTAAATATGCCCGTGGCGATGGGTTGGAGGTCGTTGAGAGACGGTTGGCTGAAATCTCCAGGAAGTATGGAATACCAGTGGAGTTTCATGGAGTCCCCGTTTTCGCTCCAGACATCACGCGTGATATGCTCGACATCAGACCAGGGGAGGCTCTGGCTGTAAACTTCCCATTGCAACTTCATCATACCCCAGACGAAAGCGTCGACGTGAACAATCCACGCGACGGTCTGCTGAGAATGGTGAAGTCATTATCTCCAAAGGTAGTAACACTGGTAGAGCAAGAATCAAACACCAACACAACCCCTTTCTTCAACAGGTTTGTGGAAACTTTAGATTACTACTTGGCAATCTTTGAGTCCATTGATGTCACTCTACCAAGGAACAACAAGAAGCGCATCAACGTGGAGCAACATTGTTTGGCGAAAGATATCGTTAATGTCATCGCTTGCGAAGGGAAGGAACGAGAAGAGCGCCACGAGCTCTTGGGCAAGTGGAAATCGAGGTTGACAATGGCAGGGTTCCGCCAGTTCCCGTTGAGCTCTTACGTCAATGCGGTCATCAGGAGCCTGCTCAGGTGTTATTCAGAACATTACACTCTCGTCGAAAAAGATGGAGCAATGCTGCTGGGATGGAAAAACAGGAACCTGATATCTGCCTCGGCCTGGTACTGA 1785 48.52 MDSHQLFGFGVNSAAAGLSYTSSYSSVPSLPNSLLGPLKFNLRNSPVSPSLFSSHFESDSFTTTVSDSQDQRNSPENLSGLSPSCNSSFETNSFNQIASSYLDHFEDESRQVYSGSNAFLYDGCSTENISFALKRLESALMGPDNEEVVSKPDASFGESSRPQMMGQRSYSWSQDRRGGSYLVQSQTSPPVSRSQQSEAVHLGKRQKSMDESMLQQGGFPSDNLKELLIACAKALAENRMEDFDNLVATARGAVSISGEPIQRLGAYMVEGLVARKEESGANIYRALNCREPASNDLLSYMHMLYEICPYLKFGYMAANGAIAEACRNEDRIHIIDFQITQGTQWLTLLQALAARPSGAPHVRITGIDDPVSKYARGDGLEVVERRLAEISRKYGIPVEFHGVPVFAPDITRDMLDIRPGEALAVNFPLQLHHTPDESVDVNNPRDGLLRMVKSLSPKVVTLVEQESNTNTTPFFNRFVETLDYYLAIFESIDVTLPRNNKKRINVEQHCLAKDIVNVIACEGKEREERHELLGKWKSRLTMAGFRQFPLSSYVNAVIRSLLRCYSEHYTLVEKDGAMLLGWKNRNLISASAWY 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36817728 36819512 + Maker00017686 Lcy9g1234 642350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1234 594 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 201 593 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Lcy9g1234 594 MobiDBLite consensus disorder prediction 156 202 - -
Lcy9g1234 594 MobiDBLite consensus disorder prediction 144 218 - -
Lcy9g1234 594 ProSiteProfiles GRAS family profile. 215 594 IPR005202 -
Lcy9g1234 594 MobiDBLite consensus disorder prediction 63 83 - -
Lcy9g1234 594 Pfam GRAS domain family 224 593 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0590 Lcy-Chr4:7117271 Lcy9g1234 Lcy-Chr9:36817728 5.18E-39 dispersed
Lcy8g1366 Lcy-Chr8:40399681 Lcy9g1234 Lcy-Chr9:36817728 1.10E-169 dispersed
Lcy9g0957 Lcy-Chr9:32038209 Lcy9g1234 Lcy-Chr9:36817728 1.84E-131 dispersed
Lcy9g1234 Lcy-Chr9:36817728 Lcy6g1707 Lcy-Chr6:32744414 3.99E-170 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20650 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1234 K27748 - csv:101216606 1032.71