Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1246 ATGGCAACACCCTGGTCTCGGAAAAAGGATCTTTCGAGCTGGGTTTCTTCAGTCCTGGAAGGGTTTCGGCCAAGAGTGCCGGAGAAATGGAGTCTGATGAATTACACTGAAGGGTGTGTTAGAACTAAGCCACTGAACTGCTCGGATCAAGTTGGTTTTGCTCAGTTTTCGGGAATGAAATTGCCTGACACTAAATTTTCTTGGGTCAACGAAAGCATGAGTTTAAGTGAATGCAGGGAGGAGTGCTTGAGAAATTGTTCTTGTGTGGGGTTCGCCAATACAAATATTAGTGGATCAGGCAGTGGTTGTGCCATTTGGCTTAGTGATCTTATTGATATGAAGGTGGTTCCAAAAGGTGGACAAAACTTGTATGTTCGAATACTCGCTTCTGAGTTAGAGACAAAGAAGACGAGTTCGGTTGTCATTGGCGCTTTAGTTTCATCTGCTGTCCTTATAGTTGCTGGTCTGCTCTTCGTTGGATTTTACATCATCAGAAGCAGTAAAAGCCTCCAAGACAAGAATGGGAGTAGTTTCCCTGAAAGCTCATACGTGTTCGACTTTCAAGTAAGGAGCTTGAAGGGCAAGAGGAAGACTTGGAGCTCCCATTATTTGACTTATCAACAATATCAAATGCCACAGAATTTTTCAAACTCTAACAAGCTTGGAGAAGGCGGTTTCGGCGCAGTTTTCTGGGGTAGACTTGAAAATGGACAAGAGATTGCTGTAAAGAGGCTTTCTTGCTATTCAAAACAAGATTCTACTAGATCAAAACTTTTAGATTGGTCGAAGCGGTTCAATATCATATGTGGAATAGCCAGAGGGATTCTTTATCTTCACCAAGATTCTAGATTGAGGATTATACATAGAGATCTCAAACCAAGCAATGTCTTGCTTGATGTTGATATGAACCCAAAAATCTCAGATTTTGGAATGGCTAGAACTTTTACTGGGAATCAAATAGAAGGAAATACTAGGAGAGTGGTTGGAACATATGGATATATGGCCCCAGAATATGCCATCGATGGACAATTTTCGATAAAGTCTGATGTATTCAGCTTTGGCATTTTACTATTGGAGATTATAAGCGAAAAGAAAAATAAAGGGTTTTATCGTTCAGACCATGCACTTAATCTTATTGGACATGATGGAAAACCATCGGAATCAATTGACCCATCCATGGGAGACTCATATTCTTTGTCTGAAATATTGCGATGCATCCATGTTAGCCTTTTGTGCTTGCAACAACATCCTGAGGATCGACCAACCATGTCAAATGTGGTTCAAATGCTAAATAGTGAGAACTTCTCGATGCAACCGAAACAACCAGGATTCTACCTAGAAGGAGACTCAAGTAAAGTCGATTCTCTTCGAGACAAGAATGAGTTTTCTACCAATAATGAACTAACTATTACCCTTCTCGGGGCTAGATAA 1431 40.74 MATPWSRKKDLSSWVSSVLEGFRPRVPEKWSLMNYTEGCVRTKPLNCSDQVGFAQFSGMKLPDTKFSWVNESMSLSECREECLRNCSCVGFANTNISGSGSGCAIWLSDLIDMKVVPKGGQNLYVRILASELETKKTSSVVIGALVSSAVLIVAGLLFVGFYIIRSSKSLQDKNGSSFPESSYVFDFQVRSLKGKRKTWSSHYLTYQQYQMPQNFSNSNKLGEGGFGAVFWGRLENGQEIAVKRLSCYSKQDSTRSKLLDWSKRFNIICGIARGILYLHQDSRLRIIHRDLKPSNVLLDVDMNPKISDFGMARTFTGNQIEGNTRRVVGTYGYMAPEYAIDGQFSIKSDVFSFGILLLEIISEKKNKGFYRSDHALNLIGHDGKPSESIDPSMGDSYSLSEILRCIHVSLLCLQQHPEDRPTMSNVVQMLNSENFSMQPKQPGFYLEGDSSKVDSLRDKNEFSTNNELTITLLGAR 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36981648 36985259 + Maker00017596 Lcy9g1246 642362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1246 476 SMART serkin_6 215 435 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1246 476 SUPERFAMILY Protein kinase-like (PK-like) 206 442 IPR011009 -
Lcy9g1246 476 ProSiteProfiles Protein kinase domain profile. 91 435 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1246 476 Gene3D Transferase(Phosphotransferase) domain 1 192 251 - -
Lcy9g1246 476 ProSiteProfiles PAN/Apple domain profile. 47 128 IPR003609 -
Lcy9g1246 476 ProSitePatterns Protein kinases ATP-binding region signature. 221 243 IPR017441 GO:0005524(InterPro)
Lcy9g1246 476 Pfam PAN-like domain 47 113 IPR003609 -
Lcy9g1246 476 Pfam Protein kinase domain 265 428 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1246 476 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 19 252 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Lcy9g1246 476 CDD PAN_AP_plant 44 127 - -
Lcy9g1246 476 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 241 438 - -
Lcy9g1246 476 Gene3D Transferase(Phosphotransferase) domain 1 252 437 - -
Lcy9g1246 476 SMART ntp_6 48 127 IPR003609 -
Lcy9g1246 476 ProSitePatterns Serine/Threonine protein kinases active-site signature. 286 298 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy9g1246 Lcy-Chr9:36981648 Lcy9g1248 Lcy-Chr9:37049189 7.56E-103 dispersed
Lcy9g1246 Lcy-Chr9:36981648 Lcy9g1247 Lcy-Chr9:37044292 2.94E-128 tandem
Lcy1g0402 Lcy-Chr1:3574770 Lcy9g1246 Lcy-Chr9:36981648 3.32E-92 wgd
Lcy8g1492 Lcy-Chr8:41570728 Lcy9g1246 Lcy-Chr9:36981648 9.64E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66183 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1246 - - - 0.0