Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy9g1262 | ATGATGTTATCCGCATCGCCTTCGACGATAGCTCGGAGCTCACTCGAGGAAATGCTTGATTCCCTTCGACGAAGGGATGAGATTGATAAGCCTAAAGACTTGCCGCCTGCATTGCCGTCTCGTCCTACTTCGAATGCTCGGATTCCTCCGGTGAGACGGGCTTTACCGGTCAATTTCAGGGTTAATGATGATGGTTCCCCAGAGTGCTCTATCAATGGCTGTAATGGAAGGGAAGATGCAATGAGGAAGGAGAATGGTTTCGGTAACTTTGCAGTCAAGAGAATGAAGAGAGATGAAAACGAGGAATCGCCTTACATGGTAGCTTCAGAAAATGATAATAAGGATCAAGTGAATGACTTGAATGGTGCTTTAATGTCAAATATTCAAGGGTCTCACTGGGAGGACAATATCAGTTATTTTCTTCATAAGAAACTTCGTGTTTGGTGCCAACTTCCAAATGGACAATGGGAGTTAGGAACTATACAGTCAAGCACTGGTGCGGATGCATCTGTCATGCTCTCAAACAAAAAGGTTATTAAAGTTTCGACTGTAGATCTTTTACCTGCTAATCCAGATATAGTGGAGGGGGTTGATGATCTTGTGCAGCTTGGTTATTTGAACGAGCCTTCAGTTATTCACAGTCTCCAGCGAAGATTTTCTCGGGATAAAATTTATAGTAATGCAGGGTCAGTTTTGATTGCCGTCAACCCACTGAAAGACACCAAACAGTATGGGAATGAGATTGTTACAGCCTATAGACAAAGAGTCATAAACAGCCCTCATGTTTATGCTACAGCAAATGCTGCCTATTCTGGAATGATGCAAGATGAAGTTAATCAATCTATTATCATCAGTGGCGAAAGTGGAGCGGGGAAGACTGAGACGGCAAAAGTTGCACTTCAGTACTTGACTGCTCTTGGTGGTGGCAGTGGCATAGATGATAGAATCCCACGGGCAAATGTTATACTGGAAGCATTTGGGAATGCTAAAACCTCCAGGAACAACAATGCCAGCAGATTTGGGAAGTTGATTGAAATTCTTTTTAGCAGAACAGGGAAGATATGTGGTGCTGTAATTCAGACTTTTCTGTTGGAAAAGTCAAGAGTTGTTCAGCTGGTCAATGGTGAGAGATCATTCCATGTCTTCTATCAACTTTGTGCTGGAGCACCATCTACACTTAAAGAGAAATTGAATATCAGAGTGGCCAGTGAGTACAGTTATCTCAATCACAGTGAATGCCTGGTGATTGGTGGTGTGGATGATGCACGGAAATTTCATACTCTTGTGGAAGCCCTAGATACACTTCAATTCACAAAGGAAGATCAAGAGCATGCATTTGGTTTGCTTGCTGCAGTTTTGTGGATAGGAAACATCACGTTTCAAACAATTGATAGTGAAAATCATGTGGAGGTCATGGCTAATGAAGCGGTTGCAAATGCTGCCAAGCTGATGGGTTGCAGTGCTAATGATCTTAAGTTAGTTTTGTCAACCCACAAAGTACAATCTGGCAGGGATAGTGCTAAAAAATTGACATTACGACAGGCAACCGATGCAAGAGATGCACTGGCAAAGTTTATCTATGCAAGCTTGTTTGACTGGCTTGTAGAACAGATCAATAAGTCACTCAAACCAGGAAGGGAGCATTCTGGAAGATCCATAAATATCCTCGACATCTATGGGTTTGAGTCATTTAAGGCAAAAGAATGGCTTCGAACAATTTTGTATCAATTATGCAAACGAGAGATTGCAGCAGCATTTTATGCGACATCTATTCAAACTTCAGCAGGAGAGCTGTTTCTAAAGATGAAAAAGGTGACAATAACTGCTTTTGCATGCATATGCTTATCCTCCTGGAGGCAATTCTTTAAAGAAAATATTGCACTTGACTATGAATTTAACGGGGTTGATGGCACAAAAGTCAACTTTGAAGACAATCAAGAGTGTTTGAATCTTATTGAGAAGAGGTCTCTAGGAGTACTAGCTTTGCTGGACGAAGAGTTAACTTTTCCTAAGGCTACAGATCTGACATTTGCTAATAAACTTAAGCAACACTTTAAATCTCATCCTCGCTTTAAAGCGGAAAGAGGTAGGGCTTTTGGTGTTCGCCATTATGCTGGAGAGGTTGTATACGATACAAATGGGTTTTTGGAGAAGAATAGAGATTTGCTGCATTCAGACTCCATCCAACTCTTTTCATCATGTACTTGCAAGCTATTGCAATTATTTGCCTCCAAAATCATTAACCATTCCCACAAACCTACAGTTTCAATGGGCTCTACAGAAGCAGTAGAATCCCTTGAGCCAGGTCTTGGTACCAAGTACAAGGTTCTACTATTTGACCTATTTCATAAATTGGAAAGCACCAGCCATCACTTCATTTGTTGCATAAGACCGAACAGAAATCAAGTTTGTGGCTTGTTTGAGGAGGACCTTGTCTTACAACAGCTTAGGTACTGCGGAATTTTGGAGGTTGTTAGGATTTCAAGATCTGGATATCCTACCAGAATGACGCATCAAGAATTTGCTGGAAGGTATGGATTCTTCGTTAAAGAATCTGGTGTATCTCAAGATCCATTGAGTATATCATTTGCTGTTCTGCAACAATTTAATGTCCACCCCGAGATGTACCATGTTGGTTTTACCAAACTATTTTTCAGAACTGGGCAGATTAGGGCATTGGAGGAAAGGAGGACACAGGTTGTGCAAGGCATCCTAGGGGTTCAAAAGTACTTCCGTGGTTGCCATTCCCGTGGCCACTTCCATGAACTTAAGCAAGCTGCCACTACCTTACAATCATTTATTCGTGGTGAAAATGCCCGAAGGAGATGTTCTGGTAAGGTGAAGAGGTTCTCATTTGTTGTGTACGCTTTCAATGTTCCTAAGAAGGTTTATGAACTGCAGGCAATCATACGATTACAGTCTGTAATACGTGGTTCGTTGGCTCGAAAGCATTGTAAGAGCACGTGTGATTCGAAGGGGTTTTCTCCTGTAAACAGAAAATCTAAACCGAACACAGGCAGGAGACTTTCAGAGGATAAATTTCAAGAACGGGCTCAAGCCTTGCCTACAACTCTGACTGAGCTTCAAAAGAGGGTCCTTGCGGCAGAAGCAACCATAGAGAAAAAGGAAGAGGAAAATGCTGCACTGCGAGAGCAAGTAAAGCAATTCGAGGCAAGGCGGTTAGAATATGAAGCCAAGATGAAGTCTATGGAGGATAAGTGGCAAAAGCAGATGGCATCTTTGCAAACGAGTCTTGCTGCTGCTAAAAAGACTCTTGCTGCTGAAAATGTTGCCTGTCCACCTGGAAGAGTTGATGCTGGTAACTCACCACCTCGATCTTATGATTCTGAGGATACGACGTCAATGGAATCTCGAACTCCTGGTGCTACGACACCTATAAAAGTTTCTGGAATTTCTGAAGCTGGAGCAGGCAAAGAAATGAATGGTACAGTCGCTGCAGTGAACAATCTTGTAAAGGAATTTGAACAGCAACGAAATGCATTTGATGATGATGCCAAAGCTTTAACTGAAGCAAAGGCACAGACAGGGGCTAATGTAAATCCAGGTGAAGAATACCGTAAAATTAAAGTCCGATTTGAAGCATGGAAGAAGGAGTACAAGGCAAGATTACGGGAAACAAAAGTTAAGGTTCATAAAACCGCACATTTTGATGTTGATAAAATTCGTCGAAAATGGTGGGGGAAGTTATCAAGAGCATCATAG | 3723 | 41.98 | MMLSASPSTIARSSLEEMLDSLRRRDEIDKPKDLPPALPSRPTSNARIPPVRRALPVNFRVNDDGSPECSINGCNGREDAMRKENGFGNFAVKRMKRDENEESPYMVASENDNKDQVNDLNGALMSNIQGSHWEDNISYFLHKKLRVWCQLPNGQWELGTIQSSTGADASVMLSNKKVIKVSTVDLLPANPDIVEGVDDLVQLGYLNEPSVIHSLQRRFSRDKIYSNAGSVLIAVNPLKDTKQYGNEIVTAYRQRVINSPHVYATANAAYSGMMQDEVNQSIIISGESGAGKTETAKVALQYLTALGGGSGIDDRIPRANVILEAFGNAKTSRNNNASRFGKLIEILFSRTGKICGAVIQTFLLEKSRVVQLVNGERSFHVFYQLCAGAPSTLKEKLNIRVASEYSYLNHSECLVIGGVDDARKFHTLVEALDTLQFTKEDQEHAFGLLAAVLWIGNITFQTIDSENHVEVMANEAVANAAKLMGCSANDLKLVLSTHKVQSGRDSAKKLTLRQATDARDALAKFIYASLFDWLVEQINKSLKPGREHSGRSINILDIYGFESFKAKEWLRTILYQLCKREIAAAFYATSIQTSAGELFLKMKKVTITAFACICLSSWRQFFKENIALDYEFNGVDGTKVNFEDNQECLNLIEKRSLGVLALLDEELTFPKATDLTFANKLKQHFKSHPRFKAERGRAFGVRHYAGEVVYDTNGFLEKNRDLLHSDSIQLFSSCTCKLLQLFASKIINHSHKPTVSMGSTEAVESLEPGLGTKYKVLLFDLFHKLESTSHHFICCIRPNRNQVCGLFEEDLVLQQLRYCGILEVVRISRSGYPTRMTHQEFAGRYGFFVKESGVSQDPLSISFAVLQQFNVHPEMYHVGFTKLFFRTGQIRALEERRTQVVQGILGVQKYFRGCHSRGHFHELKQAATTLQSFIRGENARRRCSGKVKRFSFVVYAFNVPKKVYELQAIIRLQSVIRGSLARKHCKSTCDSKGFSPVNRKSKPNTGRRLSEDKFQERAQALPTTLTELQKRVLAAEATIEKKEEENAALREQVKQFEARRLEYEAKMKSMEDKWQKQMASLQTSLAAAKKTLAAENVACPPGRVDAGNSPPRSYDSEDTTSMESRTPGATTPIKVSGISEAGAGKEMNGTVAAVNNLVKEFEQQRNAFDDDAKALTEAKAQTGANVNPGEEYRKIKVRFEAWKKEYKARLRETKVKVHKTAHFDVDKIRRKWWGKLSRAS | 1240 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 37239621 | 37250525 | - | Maker00016904 | Lcy9g1262 | 642378 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy9g1262 | 1240 | CDD | MYSc_Myo8 | 209 | 886 | IPR036022 | - | |
| Lcy9g1262 | 1240 | MobiDBLite | consensus disorder prediction | 1099 | 1134 | - | - | |
| Lcy9g1262 | 1240 | Gene3D | - | 562 | 788 | - | - | |
| Lcy9g1262 | 1240 | SMART | iq_5 | 922 | 944 | IPR000048 | GO:0005515(InterPro) | |
| Lcy9g1262 | 1240 | SMART | iq_5 | 964 | 986 | IPR000048 | GO:0005515(InterPro) | |
| Lcy9g1262 | 1240 | SMART | iq_5 | 899 | 921 | IPR000048 | GO:0005515(InterPro) | |
| Lcy9g1262 | 1240 | ProSiteProfiles | IQ motif profile. | 923 | 951 | - | - | |
| Lcy9g1262 | 1240 | MobiDBLite | consensus disorder prediction | 1112 | 1133 | - | - | |
| Lcy9g1262 | 1240 | PANTHER | MYOSIN | 146 | 1232 | - | GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER) | |
| Lcy9g1262 | 1240 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 142 | 191 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy9g1262 | 1240 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
| Lcy9g1262 | 1240 | Coils | Coil | 1158 | 1178 | - | - | |
| Lcy9g1262 | 1240 | Pfam | Myosin head (motor domain) | 197 | 566 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy9g1262 | 1240 | Pfam | Myosin head (motor domain) | 629 | 886 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy9g1262 | 1240 | Gene3D | - | 831 | 899 | - | - | |
| Lcy9g1262 | 1240 | Gene3D | Kinesin motor domain | 198 | 827 | IPR036961 | - | |
| Lcy9g1262 | 1240 | Coils | Coil | 1025 | 1073 | - | - | |
| Lcy9g1262 | 1240 | Gene3D | - | 377 | 436 | - | - | |
| Lcy9g1262 | 1240 | PRINTS | Myosin heavy chain signature | 638 | 666 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy9g1262 | 1240 | PRINTS | Myosin heavy chain signature | 279 | 304 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy9g1262 | 1240 | PRINTS | Myosin heavy chain signature | 552 | 580 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy9g1262 | 1240 | PRINTS | Myosin heavy chain signature | 225 | 244 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy9g1262 | 1240 | PRINTS | Myosin heavy chain signature | 321 | 348 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy9g1262 | 1240 | FunFam | Myosin heavy chain | 377 | 433 | - | - | |
| Lcy9g1262 | 1240 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 438 | 766 | - | - | |
| Lcy9g1262 | 1240 | MobiDBLite | consensus disorder prediction | 1 | 52 | - | - | |
| Lcy9g1262 | 1240 | Gene3D | - | 904 | 949 | - | - | |
| Lcy9g1262 | 1240 | ProSiteProfiles | IQ motif profile. | 965 | 993 | - | - | |
| Lcy9g1262 | 1240 | SMART | MYSc_2a | 189 | 899 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy9g1262 | 1240 | ProSiteProfiles | Myosin motor domain profile. | 195 | 898 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lcy9g1262 | 1240 | Pfam | IQ calmodulin-binding motif | 967 | 986 | IPR000048 | GO:0005515(InterPro) | |
| Lcy9g1262 | 1240 | Pfam | IQ calmodulin-binding motif | 925 | 943 | IPR000048 | GO:0005515(InterPro) | |
| Lcy9g1262 | 1240 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 170 | 943 | IPR027417 | - | |
| Lcy9g1262 | 1240 | MobiDBLite | consensus disorder prediction | 991 | 1010 | - | - | |
| Lcy9g1262 | 1240 | MobiDBLite | consensus disorder prediction | 17 | 34 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy7g0780 | Lcy-Chr7:7488959 | Lcy9g1262 | Lcy-Chr9:37239621 | 6.57e-313 | dispersed | |
| Lcy9g1262 | Lcy-Chr9:37239621 | Lcy13g1039 | Lcy-Chr13:22711472 | 1.50E-12 | dispersed | |
| Lcy9g1262 | Lcy-Chr9:37239621 | Lcy3g0248 | Lcy-Chr3:7827042 | 8.10E-36 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy9g1262 | K10357 | - | csv:101210624 | 1935.61 |