Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1271 ATGTGTATTGGATCTTACGCCTCTTTCACTCCCATTGATAACTATTTGATTGCGTGTGGTTCTTCACAAAACATCACCTTCCAAGGTAGAACTTTCGTTCCTGATTCTGGAAATTCATTGCTCTCCCAAGATGGTGGAAGCTTTGTTGTTGTTAGTTCGAAGGGTACTACTGCTCCATCTCCAATCTATCAATCTGCTCGGGTTTTCACGAGCATTGCTTCGTATAAATTCAAAATCAAGCAAGAGGGTCGGCATTGGATTCGGCTGTATTTTTATCCTATTCCGAAGTCGGAGCGGAATCTGGTATCTGCGTCGATCACTGTTGTTACTGAGAAGTTTGTGCTGTTGAACAACTTCACTTTCAAGAATTACAATGGTTCTTTTATGTTCAAGGAGTATGCAATCAATGTCACTTCTGATTCCTTGACCCTTACTTTCATCCCATCGAATGGATCAGTTTCGTTTGTTAATGCAATCGAAGTTGTCTCAGTGCCTGATGAGCTGCTACCTGACCAAGCATTGGCTTTGAATCCATCTGCTCCTTTTAGCGGTATCTCAGAACTTGCTCTTGAAACTGTTTACCGGTTGAACATGGGGGGTCCTTTACTCACTTCGCAAAACGATACGCTCGGAAGGACTTGGGAGAATGATATGAAATACCTCCATGTCAACAGTTCTGCAGTTAATGTCTCTGCCAGCCCGGGGAGCATAAAATATCATCCCGGTGTTACACCAGAGACTGCACCAAATTTGGTTTATGCGACTGCTGATGCCATGGGAGACCCAAATGTACAGAATGTGAACTTCAACTTGACTTGGGTTTTCTCTGTTGAGCCAAATTTTCAATACTTTGTCCGAGTGCATTTTTGTGATATAATGAGCAAGGTTCTCAATAATCTGGTTTTCAATCTTTACATAAATTCTGATAATGCTCTGGGAAGCTTTGATCTATCGTCGTTAACCGGTGACTTGGGCGTGCCTTATTACAAAGACTTCGTTTCAAACTCAGCAGATTCAGCTACTTTGACCGTTAGTGTTGGTCCAGATATGATGGCAGACATCACTAATGCAACCATGAATGGCTTGGAGATTTTGAAGATAAGCAATCAAGCCGGGAGCTTGGATGGGACTTCGTCCGTTGAAAGTCTTTTCCCAAATGCGCCCTCGAAGAAGAACAATATAGTAATCATTGTTGGTTCTGTCTTGGGAGCTGTAGTAGGCCTTGCTTTGCTCGTCTTGTGTTATTGCTGCTTCATAGGTCGCAAGTCAAAGACTACTCAACCAGCACACCCATGGCTGCCTTTGCCCTTGTATGGAAACTCTCAAACCATGACGAAAGTATCAACAACTTCTCAAAAGAGTGGAACTGCAAGCTTCATTTCTTTGGCTTCCTCCAGTCTTGGCAGATTCTTCACATTTCAGGAAATCCTTGATGCTACCAACAAGTTTGATGAAAACCTGCTCCTTGGAGTTGGTGGTTTTGGTAGGGTTTACAAGGGAACACTTGAAGATGGTATGAAAGTTGCTGTTAAAAGAGGTAATCCCAGATCCGAACAAGGTCTTGCCGAATTTCGAACTGAAATAGAAATGTTATCAAAGCTTCGACATCGTCACCTGGTGTCTCTTATTGGCTACTGTGATGAAAGATCAGAAATGGTTCTTGTCTATGAATATATGGCAAACGGACCTCTCAGGAGTCATTTGTATGGAACAGATCTACCGCCGTTGTCGTGGAAGCAACGACTTGATATTTGCATTGGTGCTGCGAGAGGGCTTCATTATCTACACACTGGTGCGGCTCAGAGCATTATACACCGAGATGTTAAAACCACAAACATTCTTTTGGACGAGAATTTCGTTGCGAAAGTTGCAGACTTTGGTCTATCAAAAACCGGGCCATCTCTGGATCAGACTCATGTTAGTACTGCTGTCAAGGGTAGTTTTGGTTACCTCGATCCTGAATACTTCAGGCGACAACAGCTCACTGAGAAGTCAGATGTATATTCATTCGGGGTTGTGCTAATGGAAGTTCTCTGCACGAGGCCAGCGCTAAACCCTGTTCTGCCCCGAGAACAAGTCAATATAGCAGAATGGGCAATGACCTGGCAGAAGAAGGGAATGCTAGATCATATCATGGACCCGAATCTGGTTGGTAAAGTTAATCCAGCATCGCTTAAGAAGTTCGGTGAAACAGCTGAGAAGTGCCTGGCCGAGTATGGGGTTGACAGGCCATCTATGGGAGATGTCCTGTGGAACCTGGAATATGCTCTCCAGCTCGAGGAAACTTCATCTGCTCTAATGGAACCTGAAGACAACAGCACAAACCACATTCCTACCATCCAACTGACCCCACTTGAGCCATTCGATAACAGTGTAAGCATGATTGATGGAGGGAACTCTGGCACCGACGACGATGCAGAAGATGCTGCAACAAGTGCAGTATTTTCGCAGCTCGTAAATCCTCGTGGGAGATGA 2475 44.2 MCIGSYASFTPIDNYLIACGSSQNITFQGRTFVPDSGNSLLSQDGGSFVVVSSKGTTAPSPIYQSARVFTSIASYKFKIKQEGRHWIRLYFYPIPKSERNLVSASITVVTEKFVLLNNFTFKNYNGSFMFKEYAINVTSDSLTLTFIPSNGSVSFVNAIEVVSVPDELLPDQALALNPSAPFSGISELALETVYRLNMGGPLLTSQNDTLGRTWENDMKYLHVNSSAVNVSASPGSIKYHPGVTPETAPNLVYATADAMGDPNVQNVNFNLTWVFSVEPNFQYFVRVHFCDIMSKVLNNLVFNLYINSDNALGSFDLSSLTGDLGVPYYKDFVSNSADSATLTVSVGPDMMADITNATMNGLEILKISNQAGSLDGTSSVESLFPNAPSKKNNIVIIVGSVLGAVVGLALLVLCYCCFIGRKSKTTQPAHPWLPLPLYGNSQTMTKVSTTSQKSGTASFISLASSSLGRFFTFQEILDATNKFDENLLLGVGGFGRVYKGTLEDGMKVAVKRGNPRSEQGLAEFRTEIEMLSKLRHRHLVSLIGYCDERSEMVLVYEYMANGPLRSHLYGTDLPPLSWKQRLDICIGAARGLHYLHTGAAQSIIHRDVKTTNILLDENFVAKVADFGLSKTGPSLDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLMEVLCTRPALNPVLPREQVNIAEWAMTWQKKGMLDHIMDPNLVGKVNPASLKKFGETAEKCLAEYGVDRPSMGDVLWNLEYALQLEETSSALMEPEDNSTNHIPTIQLTPLEPFDNSVSMIDGGNSGTDDDAEDAATSAVFSQLVNPRGR 824
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37310086 37312560 - Maker00016115 Lcy9g1271 642387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1271 824 Pfam Protein tyrosine and serine/threonine kinase 489 680 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g1271 824 MobiDBLite consensus disorder prediction 788 809 - -
Lcy9g1271 824 FunFam Receptor-like protein kinase FERONIA 559 775 - -
Lcy9g1271 824 SUPERFAMILY Protein kinase-like (PK-like) 460 754 IPR011009 -
Lcy9g1271 824 ProSitePatterns Protein kinases ATP-binding region signature. 489 511 IPR017441 GO:0005524(InterPro)
Lcy9g1271 824 FunFam Receptor-like protein kinase FERONIA 189 369 - -
Lcy9g1271 824 ProSitePatterns Serine/Threonine protein kinases active-site signature. 603 615 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g1271 824 ProSiteProfiles Protein kinase domain profile. 483 756 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1271 824 PANTHER OS07G0166700 PROTEIN 471 760 IPR045272 GO:0004672(PANTHER)|GO:0004714(InterPro)|GO:0005886(PANTHER)|GO:0006468(InterPro)|GO:0009506(PANTHER)|GO:0046777(PANTHER)
Lcy9g1271 824 SMART serkin_6 483 756 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1271 824 CDD STKc_IRAK 489 754 - -
Lcy9g1271 824 Gene3D Transferase(Phosphotransferase) domain 1 559 776 - -
Lcy9g1271 824 Gene3D - 14 164 - -
Lcy9g1271 824 Gene3D - 188 369 - -
Lcy9g1271 824 Pfam Malectin-like domain 17 366 IPR024788 -
Lcy9g1271 824 FunFam Putative receptor-like protein kinase 14 165 - -
Lcy9g1271 824 FunFam receptor-like protein kinase FERONIA 444 558 - -
Lcy9g1271 824 Gene3D Phosphorylase Kinase; domain 1 441 558 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0115 Lcy-Chr1:988996 Lcy9g1271 Lcy-Chr9:37310086 9.09E-225 dispersed
Lcy2g0554 Lcy-Chr2:4756934 Lcy9g1271 Lcy-Chr9:37310086 1.35E-287 dispersed
Lcy3g2089 Lcy-Chr3:47850450 Lcy9g1271 Lcy-Chr9:37310086 3.81E-279 dispersed
Lcy4g1986 Lcy-Chr4:46267795 Lcy9g1271 Lcy-Chr9:37310086 2.36E-209 dispersed
Lcy7g0791 Lcy-Chr7:7669895 Lcy9g1271 Lcy-Chr9:37310086 2.91E-219 dispersed
Lcy8g0871 Lcy-Chr8:31362984 Lcy9g1271 Lcy-Chr9:37310086 4.50E-155 dispersed
Lcy8g0872 Lcy-Chr8:31376785 Lcy9g1271 Lcy-Chr9:37310086 3.50E-158 dispersed
Lcy9g1271 Lcy-Chr9:37310086 Lcy6g1411 Lcy-Chr6:20994050 1.87E-73 dispersed
Lcy9g1271 Lcy-Chr9:37310086 Lcy8g1847 Lcy-Chr8:44807867 1.82E-281 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66186 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1271 - - - 0.0