Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1311 ATGTTGTTTGCTGATGAAACCTCCTTGGAATTTCAACGCATTTTCGCATCTGTTTTTGTTGATCCTTTTCTGTGCCTGCTTGTGTTGAAGGTCTTTACATTTTATTATGCATTGGCCATCCACCATTTGCGGATTCAGATTCTAAGCTCTTTGCTTCAGCTTCGTTTTGTATATGATGTTTGCAATGTTGGGTTTGATCCTTGCAAAATTTCTGGACATCTAAATTTGTTTCTTCTTTGTAGTTTAAGACGATTGAAATCTTTAGAATTGATCTGTGCCTCTATGAGGCAGGAAAATGAAAATGTTACATCTTTTATTCCTTACATTCTTGAAAAAGTTGGGTTGGGTTCGTCGGATCCAGACTCTGGAAAAGGAAAGAGCAAGATGTCCAAGCATGTCACGCATGGTTTTCACTTGGTGGAAGGGAAATCAAATCATGCCATGGAAGATTATGTGGTTGCAGAGTTTAAGCAAGTGGATCATCATCATCATGAGCTTGGTTTATTTGCAATCTTCGATGGCCATTTGAGCAATGCTATCCCTGATTATTTACAGTCGCATTTATTTTCTAATATAATAAATGAGCCCGATTTCTGGGTAGATCCAAAGAACGCAATCAGGAAAGCATACAGGGAAACCGACACTTACATTTTAGAGAAGGCCGTTGATTTTAGTCATGGGGGTTCAACTGCTGTTACAGCCATATTGATCGACTGTAAGAAACTAGTTGTGGGCAATGTGGGGGATTCCCGTGCAGTTATCTGTAAGAAGGGCAAGGCCAGTCAATTATCAGTCGATCATGAGCCGAGCGCTGAAAGAAAAAGCATCGAGGACAGAGGTGGTTTTGTAACAAGCTTTCCTGGCGATGTTCCACGTGTTGATGGGCAGTTGGCCGTTGCAAGGGCGTTTGGTGATAGGAGCTTAAAGAAACACTTGAGCTCAGAGCCTGATGTGGTAGAGGAGACGATAGATGACGAGACCGAGTTTGTTATCTTGGCAAGCGATGGATTGTGGAAGGTTGGTGTCGATCTTGTGGAAGTGATGTCGAACGAAGAAGCCGTAGAGTCTATCAGGCAAATAAAAGACGCTCATGCAGCTGCCAAGCATTTGACAGAGGAGGCTCTCAAGAGGAAGAGCAAAGATGATATTTCTTGTATAGTTGTGAGATTTCACTGA 1176 42.09 MLFADETSLEFQRIFASVFVDPFLCLLVLKVFTFYYALAIHHLRIQILSSLLQLRFVYDVCNVGFDPCKISGHLNLFLLCSLRRLKSLELICASMRQENENVTSFIPYILEKVGLGSSDPDSGKGKSKMSKHVTHGFHLVEGKSNHAMEDYVVAEFKQVDHHHHELGLFAIFDGHLSNAIPDYLQSHLFSNIINEPDFWVDPKNAIRKAYRETDTYILEKAVDFSHGGSTAVTAILIDCKKLVVGNVGDSRAVICKKGKASQLSVDHEPSAERKSIEDRGGFVTSFPGDVPRVDGQLAVARAFGDRSLKKHLSSEPDVVEETIDDETEFVILASDGLWKVGVDLVEVMSNEEAVESIRQIKDAHAAAKHLTEEALKRKSKDDISCIVVRFH 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37855499 37859675 - Maker00016973 Lcy9g1311 642427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1311 391 CDD PP2Cc 142 390 IPR001932 -
Lcy9g1311 391 PANTHER PROTEIN PHOSPHATASE 127 388 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lcy9g1311 391 Gene3D - 117 391 IPR036457 -
Lcy9g1311 391 ProSiteProfiles PPM-type phosphatase domain profile. 134 390 IPR001932 -
Lcy9g1311 391 SMART PP2C_4 130 388 IPR001932 -
Lcy9g1311 391 Pfam Protein phosphatase 2C 145 383 IPR001932 -
Lcy9g1311 391 SUPERFAMILY PP2C-like 130 391 IPR036457 -
Lcy9g1311 391 FunFam Probable protein phosphatase 2C 39 124 391 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0114 Lcy-Chr1:986786 Lcy9g1311 Lcy-Chr9:37855499 3.67E-100 dispersed
Lcy6g0369 Lcy-Chr6:3407661 Lcy9g1311 Lcy-Chr9:37855499 3.34E-32 dispersed
Lcy7g1000 Lcy-Chr7:10507846 Lcy9g1311 Lcy-Chr9:37855499 1.32E-29 dispersed
Lcy9g1311 Lcy-Chr9:37855499 Lcy9g1733 Lcy-Chr9:42519459 2.18E-59 dispersed
Lcy4g0673 Lcy-Chr4:8138087 Lcy9g1311 Lcy-Chr9:37855499 6.56E-118 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1311 K17506 - csv:101215129 476.863