Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1314 ATGTCTGACGTGGCGAGTATAGCAGAGGCAGTGGCAGCAAGGTTTAGTTCTTTGGAGCTTATTGGAAGAGGTTCTTTTGGTGATGTCTACAAGGGGTTTGACAAGGAGCTTAACAAAGAAGTTGCTATCAAAGTTATTGATTTGGAAGAATCTGAGGATGAAATTGAGGATATTCAGAAGGAAATTTCTGTTTTGTCACAATGTCGATCGCCCTACATTACTGAGTACTATGGTTCTTATCTCCACCAGACGAAGTTATGGATAATAATGGAATATATGGCTGGTGGTTCTGTTGCAGATCTGCTGCAGTCTGGGCCACCGCTTGATGAAATGTCAATTGCATGCATTCTACGGGATTTGCTGCATGCAATTGATTATTTGCACACTGAAGGAAAAATTCACAGGGACATTAAAGCGGCAAACATTTTACTGAGTGAAAATGGTGATGTTAAGGTTGCAGATTTTGGTGTTTCTGCTCAATTAACAAGGACAATATCAAGGAGAAAGACATTTGTAGGAACTCCATTCTGGATGGCGCCAGAGGTAATTCAGAATTCTGAAGGATACAATGAGAAGGCAGACATCTGGTCTCTAGGAATCACTGCTATTGAAATGGCAAAAGGGGAGCCTCCACTTGCTGATCTTCATCCCATGAGAGTTCTTTTTATCATACCTCGAGAAAATCCACCTCAGTTGGATGAACATTTTTCTCGCCCTATGAAAGAATTAGTGTCACTGTGTCTGAAGAAAATACCTGCTGAGAGACCCAGTGCCAAAGAGCTTCTGAAGCATCGATTCATTAAGAATGCCAGGAAGAGTCCTAGGCTTCTGGAGAGAATAAGAGAACGTCCGAAGTACCAAATAAAGGATGATGAAGATGCAGAAACACCAACTAATGGTTCTAGAGCTATGGGTGAAACATCGGATACTGTGAAAGTATCAAGAAATGTAAGGGAGGAAACTGTTCGTGCCAGCAACCAGAGTAAAACTCCAAAGAATGCTGGATGGGACTTTAGCATTGGGGGGCCAAATAGTACAGGTACTGTTCGAAGTGTAGTAAAACCACCTCAAATTAGGGAAAGAAAACCAGAAATTCCTTATGGTCAGGCTGCACCTAGTAGAGTTGCAGAGAGTGGTAACTGGCCGACTGCATCTGGAAATGCACCTCGTGACATAGCAGAAAATGCTAGAAATTCGTACAATATGGGGGATGCTAGTGAAGATGAAGAGTTATCTGTAAGTGGTTCAGGAACCATTGTGATCCGGTCTCCCAGGGGGTCTCACGCATCTACTCAATTTCAAAATGAAAGCAGTCCGTCTGAAAGTGCACAAGCATATTTTGAGGACACATCTTTTAGTGGTACTGTTGTTATGCGTGGTCAACGTGATGATTCGGACTCTCCTCGGACTCCAAAATCCAGATTGGGAACTCAAGAAAGGACTTCAAGTTTGTCTCCTGAAGATAGTGCATTAAACCTTGCGGAGGCAAAGGCTGCAATGCAAGCAGCATTGAAGAAAACTAATGTAAGGGAAAGACCGGCCCTCAATAAACGCAATGACAGGAAGGAAAATAGAAGAACAGAGCAAACAGTGAGTAGCTCTGACTCTTCGAGGCATTCTCGTGAATTCTTTGATGCACCAAGAGCATTGCCAAAACCGTCTCCATCAATTGATGATGAAGAAAGTGCAAAAATAGCATTGTCTTCTGCACCTTTATCGATTTTGTTTATGTCAACCTTGAAAGAGGTAGTTGCGGATGATTCGGAAGGATCACCTGCTCGTTCTGTAATTAATGCACTTATAAATATGGAACACCGAAAACCTGGATCATGTGAGGTTCTTGTTACCAAGTTGCTTCAGAAATTGGCCAGTTCCAATGAATCTTCACTGAAAGATTTACAAGACTTGGCAACTCGCATATTCTCCAAGGCAAAGACAGTTCCCGAAGATACTCAAAATGTCGCAGATTCTGATAGCAGCAAAAGGCAACCAAACAGGGAACTTCATTCAAATTCTAATTTGAGCTCGCTTGCTAGATTTTTACTCTCCAGATGGCAAGGTCAGGTGTCACGGGATCTCAGTCCAGCTTAA 2091 42.47 MSDVASIAEAVAARFSSLELIGRGSFGDVYKGFDKELNKEVAIKVIDLEESEDEIEDIQKEISVLSQCRSPYITEYYGSYLHQTKLWIIMEYMAGGSVADLLQSGPPLDEMSIACILRDLLHAIDYLHTEGKIHRDIKAANILLSENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSEGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRPMKELVSLCLKKIPAERPSAKELLKHRFIKNARKSPRLLERIRERPKYQIKDDEDAETPTNGSRAMGETSDTVKVSRNVREETVRASNQSKTPKNAGWDFSIGGPNSTGTVRSVVKPPQIRERKPEIPYGQAAPSRVAESGNWPTASGNAPRDIAENARNSYNMGDASEDEELSVSGSGTIVIRSPRGSHASTQFQNESSPSESAQAYFEDTSFSGTVVMRGQRDDSDSPRTPKSRLGTQERTSSLSPEDSALNLAEAKAAMQAALKKTNVRERPALNKRNDRKENRRTEQTVSSSDSSRHSREFFDAPRALPKPSPSIDDEESAKIALSSAPLSILFMSTLKEVVADDSEGSPARSVINALINMEHRKPGSCEVLVTKLLQKLASSNESSLKDLQDLATRIFSKAKTVPEDTQNVADSDSSKRQPNRELHSNSNLSSLARFLLSRWQGQVSRDLSPA 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37904579 37921416 + Maker00016682 Lcy9g1314 642430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1314 696 MobiDBLite consensus disorder prediction 458 487 - -
Lcy9g1314 696 Coils Coil 41 68 - -
Lcy9g1314 696 FunFam serine/threonine-protein kinase dst1 isoform X1 12 301 - -
Lcy9g1314 696 MobiDBLite consensus disorder prediction 648 671 - -
Lcy9g1314 696 MobiDBLite consensus disorder prediction 320 352 - -
Lcy9g1314 696 CDD STKc_MST3_like 14 287 - -
Lcy9g1314 696 MobiDBLite consensus disorder prediction 510 529 - -
Lcy9g1314 696 MobiDBLite consensus disorder prediction 419 444 - -
Lcy9g1314 696 MobiDBLite consensus disorder prediction 278 391 - -
Lcy9g1314 696 ProSiteProfiles Protein kinase domain profile. 15 267 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1314 696 MobiDBLite consensus disorder prediction 504 561 - -
Lcy9g1314 696 Gene3D Transferase(Phosphotransferase) domain 1 12 303 - -
Lcy9g1314 696 SMART serkin_6 15 267 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1314 696 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524(InterPro)
Lcy9g1314 696 SUPERFAMILY Protein kinase-like (PK-like) 13 317 IPR011009 -
Lcy9g1314 696 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 13 664 IPR050629 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)
Lcy9g1314 696 MobiDBLite consensus disorder prediction 471 487 - -
Lcy9g1314 696 Pfam Protein kinase domain 16 267 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1314 696 MobiDBLite consensus disorder prediction 278 297 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0347 Lcy-Chr13:3901720 Lcy9g1314 Lcy-Chr9:37904579 1.55E-20 dispersed
Lcy4g2246 Lcy-Chr4:49025183 Lcy9g1314 Lcy-Chr9:37904579 5.61E-37 dispersed
Lcy5g2364 Lcy-Chr5:46474646 Lcy9g1314 Lcy-Chr9:37904579 8.82E-40 dispersed
Lcy6g0152 Lcy-Chr6:1424354 Lcy9g1314 Lcy-Chr9:37904579 6.06E-30 dispersed
Lcy6g2295 Lcy-Chr6:47648500 Lcy9g1314 Lcy-Chr9:37904579 5.17E-44 dispersed
Lcy7g0345 Lcy-Chr7:2886853 Lcy9g1314 Lcy-Chr9:37904579 5.28E-72 dispersed
Lcy8g1430 Lcy-Chr8:40953190 Lcy9g1314 Lcy-Chr9:37904579 1.71E-34 dispersed
Lcy9g1314 Lcy-Chr9:37904579 Lcy8g1697 Lcy-Chr8:43542269 7.09E-30 dispersed
Lcy9g1314 Lcy-Chr9:37904579 Lcy12g0039 Lcy-Chr12:651534 2.35E-48 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66187 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1314 K08838 - csv:101214412 1234.55