Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1314 ATGTCTGACGTGGCGAGTATAGCAGAGGCAGTGGCAGCAAGGTTTAGTTCTTTGGAGCTTATTGGAAGAGGTTCTTTTGGTGATGTCTACAAGGGGTTTGACAAGGAGCTTAACAAAGAAGTTGCTATCAAAGTTATTGATTTGGAAGAATCTGAGGATGAAATTGAGGATATTCAGAAGGAAATTTCTGTTTTGTCACAATGTCGATCGCCCTACATTACTGAGTACTATGGTTCTTATCTCCACCAGACGAAGTTATGGATAATAATGGAATATATGGCTGGTGGTTCTGTTGCAGATCTGCTGCAGTCTGGGCCACCGCTTGATGAAATGTCAATTGCATGCATTCTACGGGATTTGCTGCATGCAATTGATTATTTGCACACTGAAGGAAAAATTCACAGGGACATTAAAGCGGCAAACATTTTACTGAGTGAAAATGGTGATGTTAAGGTTGCAGATTTTGGTGTTTCTGCTCAATTAACAAGGACAATATCAAGGAGAAAGACATTTGTAGGAACTCCATTCTGGATGGCGCCAGAGGTAATTCAGAATTCTGAAGGATACAATGAGAAGGCAGACATCTGGTCTCTAGGAATCACTGCTATTGAAATGGCAAAAGGGGAGCCTCCACTTGCTGATCTTCATCCCATGAGAGTTCTTTTTATCATACCTCGAGAAAATCCACCTCAGTTGGATGAACATTTTTCTCGCCCTATGAAAGAATTAGTGTCACTGTGTCTGAAGAAAATACCTGCTGAGAGACCCAGTGCCAAAGAGCTTCTGAAGCATCGATTCATTAAGAATGCCAGGAAGAGTCCTAGGCTTCTGGAGAGAATAAGAGAACGTCCGAAGTACCAAATAAAGGATGATGAAGATGCAGAAACACCAACTAATGGTTCTAGAGCTATGGGTGAAACATCGGATACTGTGAAAGTATCAAGAAATGTAAGGGAGGAAACTGTTCGTGCCAGCAACCAGAGTAAAACTCCAAAGAATGCTGGATGGGACTTTAGCATTGGGGGGCCAAATAGTACAGGTACTGTTCGAAGTGTAGTAAAACCACCTCAAATTAGGGAAAGAAAACCAGAAATTCCTTATGGTCAGGCTGCACCTAGTAGAGTTGCAGAGAGTGGTAACTGGCCGACTGCATCTGGAAATGCACCTCGTGACATAGCAGAAAATGCTAGAAATTCGTACAATATGGGGGATGCTAGTGAAGATGAAGAGTTATCTGTAAGTGGTTCAGGAACCATTGTGATCCGGTCTCCCAGGGGGTCTCACGCATCTACTCAATTTCAAAATGAAAGCAGTCCGTCTGAAAGTGCACAAGCATATTTTGAGGACACATCTTTTAGTGGTACTGTTGTTATGCGTGGTCAACGTGATGATTCGGACTCTCCTCGGACTCCAAAATCCAGATTGGGAACTCAAGAAAGGACTTCAAGTTTGTCTCCTGAAGATAGTGCATTAAACCTTGCGGAGGCAAAGGCTGCAATGCAAGCAGCATTGAAGAAAACTAATGTAAGGGAAAGACCGGCCCTCAATAAACGCAATGACAGGAAGGAAAATAGAAGAACAGAGCAAACAGTGAGTAGCTCTGACTCTTCGAGGCATTCTCGTGAATTCTTTGATGCACCAAGAGCATTGCCAAAACCGTCTCCATCAATTGATGATGAAGAAAGTGCAAAAATAGCATTGTCTTCTGCACCTTTATCGATTTTGTTTATGTCAACCTTGAAAGAGGTAGTTGCGGATGATTCGGAAGGATCACCTGCTCGTTCTGTAATTAATGCACTTATAAATATGGAACACCGAAAACCTGGATCATGTGAGGTTCTTGTTACCAAGTTGCTTCAGAAATTGGCCAGTTCCAATGAATCTTCACTGAAAGATTTACAAGACTTGGCAACTCGCATATTCTCCAAGGCAAAGACAGTTCCCGAAGATACTCAAAATGTCGCAGATTCTGATAGCAGCAAAAGGCAACCAAACAGGGAACTTCATTCAAATTCTAATTTGAGCTCGCTTGCTAGATTTTTACTCTCCAGATGGCAAGGTCAGGTGTCACGGGATCTCAGTCCAGCTTAA 2091 42.47 MSDVASIAEAVAARFSSLELIGRGSFGDVYKGFDKELNKEVAIKVIDLEESEDEIEDIQKEISVLSQCRSPYITEYYGSYLHQTKLWIIMEYMAGGSVADLLQSGPPLDEMSIACILRDLLHAIDYLHTEGKIHRDIKAANILLSENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSEGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRPMKELVSLCLKKIPAERPSAKELLKHRFIKNARKSPRLLERIRERPKYQIKDDEDAETPTNGSRAMGETSDTVKVSRNVREETVRASNQSKTPKNAGWDFSIGGPNSTGTVRSVVKPPQIRERKPEIPYGQAAPSRVAESGNWPTASGNAPRDIAENARNSYNMGDASEDEELSVSGSGTIVIRSPRGSHASTQFQNESSPSESAQAYFEDTSFSGTVVMRGQRDDSDSPRTPKSRLGTQERTSSLSPEDSALNLAEAKAAMQAALKKTNVRERPALNKRNDRKENRRTEQTVSSSDSSRHSREFFDAPRALPKPSPSIDDEESAKIALSSAPLSILFMSTLKEVVADDSEGSPARSVINALINMEHRKPGSCEVLVTKLLQKLASSNESSLKDLQDLATRIFSKAKTVPEDTQNVADSDSSKRQPNRELHSNSNLSSLARFLLSRWQGQVSRDLSPA 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37904579 37921416 + Maker00016682 Lcy9g1314 642430

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1314 696 MobiDBLite consensus disorder prediction 458 487 - -
Lcy9g1314 696 Coils Coil 41 68 - -
Lcy9g1314 696 FunFam serine/threonine-protein kinase dst1 isoform X1 12 301 - -
Lcy9g1314 696 MobiDBLite consensus disorder prediction 648 671 - -
Lcy9g1314 696 MobiDBLite consensus disorder prediction 320 352 - -
Lcy9g1314 696 CDD STKc_MST3_like 14 287 - -
Lcy9g1314 696 MobiDBLite consensus disorder prediction 510 529 - -
Lcy9g1314 696 MobiDBLite consensus disorder prediction 419 444 - -
Lcy9g1314 696 MobiDBLite consensus disorder prediction 278 391 - -
Lcy9g1314 696 ProSiteProfiles Protein kinase domain profile. 15 267 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1314 696 MobiDBLite consensus disorder prediction 504 561 - -
Lcy9g1314 696 Gene3D Transferase(Phosphotransferase) domain 1 12 303 - -
Lcy9g1314 696 SMART serkin_6 15 267 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1314 696 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524(InterPro)
Lcy9g1314 696 SUPERFAMILY Protein kinase-like (PK-like) 13 317 IPR011009 -
Lcy9g1314 696 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 13 664 IPR050629 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)
Lcy9g1314 696 MobiDBLite consensus disorder prediction 471 487 - -
Lcy9g1314 696 Pfam Protein kinase domain 16 267 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1314 696 MobiDBLite consensus disorder prediction 278 297 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1314 K08838 - - csv:101214412 1234.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0347 Lcy-Chr13:3901720 Lcy9g1314 Lcy-Chr9:37904579 1.55E-20 dispersed
Lcy4g2246 Lcy-Chr4:49025183 Lcy9g1314 Lcy-Chr9:37904579 5.61E-37 dispersed
Lcy5g2364 Lcy-Chr5:46474646 Lcy9g1314 Lcy-Chr9:37904579 8.82E-40 dispersed
Lcy6g0152 Lcy-Chr6:1424354 Lcy9g1314 Lcy-Chr9:37904579 6.06E-30 dispersed
Lcy6g2295 Lcy-Chr6:47648500 Lcy9g1314 Lcy-Chr9:37904579 5.17E-44 dispersed
Lcy7g0345 Lcy-Chr7:2886853 Lcy9g1314 Lcy-Chr9:37904579 5.28E-72 dispersed
Lcy8g1430 Lcy-Chr8:40953190 Lcy9g1314 Lcy-Chr9:37904579 1.71E-34 dispersed
Lcy9g1314 Lcy-Chr9:37904579 Lcy8g1697 Lcy-Chr8:43542269 7.09E-30 dispersed
Lcy9g1314 Lcy-Chr9:37904579 Lcy12g0039 Lcy-Chr12:651534 2.35E-48 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy9g1314 . 1 697 MAP Kinase Kinase Kinase Kinase AT1G53165 62.0 1.8e-220 763.1
Lcy7g0345 . 268 525 MAP Kinase Kinase Kinase Kinase AT1G53165 51.4 1.6e-64 245.0
Lcy9g1314 . 1 693 MAP Kinase Kinase Kinase Kinase AT3G15220 64.6 2.0e-232 802.7
Lcy7g0345 . 268 525 MAP Kinase Kinase Kinase Kinase AT3G15220 51.0 9.6e-65 245.7
Lcy7g0345 . 4 909 MAP Kinase Kinase Kinase Kinase AT1G69220 55.9 5.1e-235 811.6
Lcy9g1314 . 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 51.8 4.1e-67 253.8
Lcy10g1923 . 122 686 MAP Kinase Kinase Kinase Kinase AT5G14720 66.9 5.8e-216 748.0
Lcy6g2295 . 7 853 MAP Kinase Kinase Kinase Kinase AT4G24100 54.8 6.9e-231 797.7
Lcy10g1923 . 127 514 MAP Kinase Kinase Kinase Kinase AT4G24100 60.2 1.6e-134 477.6
Lcy6g2295 . 11 854 MAP Kinase Kinase Kinase Kinase AT4G10730 55.0 2.3e-231 799.3
Lcy10g1923 . 122 490 MAP Kinase Kinase Kinase Kinase AT1G70430 69.6 3.0e-147 519.6
Lcy12g0509 . 1 658 MAP Kinase Kinase Kinase Kinase AT1G79640 57.7 7.0e-206 714.5
Lcy10g1923 . 127 683 MAP Kinase Kinase Kinase Kinase AT1G79640 50.9 5.4e-150 528.9
Lcy10g1923 . 122 455 MAP Kinase Kinase Kinase Kinase AT1G23700 58.5 5.6e-104 375.6
Lcy11g1629 . 33 492 MAP Kinase Kinase Kinase Kinase AT4G14480 58.4 7.3e-144 508.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005838 1 3 1 1 1 0 2 1 0 1 1 1 2 1 1 2 0 3 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66187 None None None None Lcy PK