Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1319 ATGGCTGCCGGAAACCGCTCCACATCCGCCGCCACCGCCGCCTCTGCTGGCGTCGAGATCCGCTACAGGGGCGTCAGGAAGAGGCCATGGGGCCGTTACGCGGCGGAAATCCGGGACCCTCGGAAGAAGACCAGGGTTTGGCTTGGCACCTTCAACACGGCGGAGGAAGCGGCGCGTGCTTACGACACGGCCGCGCGTGAATTCCGAGGCGCCAATGCGAAAACCAATTTCCCCGTTCCGAACGAATTCCTCGACAACAACAACAACTTCCGTAAATCCGCTTGTAGTAGTCCGAGCGAGAGCAGCACCGTCGACTCCTCTTCCGCTCCGTCGCCGGCGCCGGATGCCGCACTCGCTCGCTTCCTCGACGGCAGCGTCCACGCGCCGGCCCTTTCCCCCCCAATTTACTTCTTCGACGCGTTCGCCCAGGCGGAGAAGATGAACGACTTTCACCGGACTGTCACTGTCGCCGTCGCCGGCGGATCGGCGAGTGACTCCGATTCGTCATCGGTAGTCGATTTCGACGATGCGCGAAAATCGCGGCCGTTGGATTTTGACCTGAATCTTCCGGCGGTGGAAGTTGCTTGA 588 62.07 MAAGNRSTSAATAASAGVEIRYRGVRKRPWGRYAAEIRDPRKKTRVWLGTFNTAEEAARAYDTAAREFRGANAKTNFPVPNEFLDNNNNFRKSACSSPSESSTVDSSSAPSPAPDAALARFLDGSVHAPALSPPIYFFDAFAQAEKMNDFHRTVTVAVAGGSASDSDSSSVVDFDDARKSRPLDFDLNLPAVEVA 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37952784 37953371 - Maker00016459 Lcy9g1319 642435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1319 195 CDD AP2 21 79 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g1319 195 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g1319 195 Pfam AP2 domain 21 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g1319 195 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 9 170 - -
Lcy9g1319 195 MobiDBLite consensus disorder prediction 90 111 - -
Lcy9g1319 195 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g1319 195 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g1319 195 SMART rav1_2 21 84 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g1319 195 Gene3D AP2/ERF domain 20 79 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g1319 195 MobiDBLite consensus disorder prediction 90 110 - -
Lcy9g1319 195 FunFam Ethylene-responsive transcription factor 2 21 79 - -
Lcy9g1319 195 SUPERFAMILY DNA-binding domain 21 79 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy8g1597 Lcy-Chr8:42591582 Lcy9g1319 Lcy-Chr9:37952784 1.91E-32 dispersed
Lcy9g0587 Lcy-Chr9:19221192 Lcy9g1319 Lcy-Chr9:37952784 2.16E-22 dispersed
Lcy9g1319 Lcy-Chr9:37952784 Lcy5g0851 Lcy-Chr5:13779527 2.03E-19 dispersed
Lcy4g0676 Lcy-Chr4:8192776 Lcy9g1319 Lcy-Chr9:37952784 6.36E-47 wgd
Lcy5g1860 Lcy-Chr5:41458720 Lcy9g1319 Lcy-Chr9:37952784 2.27E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20657 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1319 K09286 - csv:101213540 223.787