Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy9g1319 | ATGGCTGCCGGAAACCGCTCCACATCCGCCGCCACCGCCGCCTCTGCTGGCGTCGAGATCCGCTACAGGGGCGTCAGGAAGAGGCCATGGGGCCGTTACGCGGCGGAAATCCGGGACCCTCGGAAGAAGACCAGGGTTTGGCTTGGCACCTTCAACACGGCGGAGGAAGCGGCGCGTGCTTACGACACGGCCGCGCGTGAATTCCGAGGCGCCAATGCGAAAACCAATTTCCCCGTTCCGAACGAATTCCTCGACAACAACAACAACTTCCGTAAATCCGCTTGTAGTAGTCCGAGCGAGAGCAGCACCGTCGACTCCTCTTCCGCTCCGTCGCCGGCGCCGGATGCCGCACTCGCTCGCTTCCTCGACGGCAGCGTCCACGCGCCGGCCCTTTCCCCCCCAATTTACTTCTTCGACGCGTTCGCCCAGGCGGAGAAGATGAACGACTTTCACCGGACTGTCACTGTCGCCGTCGCCGGCGGATCGGCGAGTGACTCCGATTCGTCATCGGTAGTCGATTTCGACGATGCGCGAAAATCGCGGCCGTTGGATTTTGACCTGAATCTTCCGGCGGTGGAAGTTGCTTGA | 588 | 62.07 | MAAGNRSTSAATAASAGVEIRYRGVRKRPWGRYAAEIRDPRKKTRVWLGTFNTAEEAARAYDTAAREFRGANAKTNFPVPNEFLDNNNNFRKSACSSPSESSTVDSSSAPSPAPDAALARFLDGSVHAPALSPPIYFFDAFAQAEKMNDFHRTVTVAVAGGSASDSDSSSVVDFDDARKSRPLDFDLNLPAVEVA | 195 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 37952784 | 37953371 | - | Maker00016459 | Lcy9g1319 | 642435 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy9g1319 | 195 | CDD | AP2 | 21 | 79 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g1319 | 195 | ProSiteProfiles | AP2/ERF domain profile. | 21 | 78 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g1319 | 195 | Pfam | AP2 domain | 21 | 70 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g1319 | 195 | PANTHER | AP2 DOMAIN CLASS TRANSCRIPTION FACTOR | 9 | 170 | - | - | |
Lcy9g1319 | 195 | MobiDBLite | consensus disorder prediction | 90 | 111 | - | - | |
Lcy9g1319 | 195 | PRINTS | Ethylene responsive element binding protein signature | 44 | 60 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g1319 | 195 | PRINTS | Ethylene responsive element binding protein signature | 22 | 33 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g1319 | 195 | SMART | rav1_2 | 21 | 84 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g1319 | 195 | Gene3D | AP2/ERF domain | 20 | 79 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g1319 | 195 | MobiDBLite | consensus disorder prediction | 90 | 110 | - | - | |
Lcy9g1319 | 195 | FunFam | Ethylene-responsive transcription factor 2 | 21 | 79 | - | - | |
Lcy9g1319 | 195 | SUPERFAMILY | DNA-binding domain | 21 | 79 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy8g1597 | Lcy-Chr8:42591582 | Lcy9g1319 | Lcy-Chr9:37952784 | 1.91E-32 | dispersed | |
Lcy9g0587 | Lcy-Chr9:19221192 | Lcy9g1319 | Lcy-Chr9:37952784 | 2.16E-22 | dispersed | |
Lcy9g1319 | Lcy-Chr9:37952784 | Lcy5g0851 | Lcy-Chr5:13779527 | 2.03E-19 | dispersed | |
Lcy4g0676 | Lcy-Chr4:8192776 | Lcy9g1319 | Lcy-Chr9:37952784 | 6.36E-47 | wgd | |
Lcy5g1860 | Lcy-Chr5:41458720 | Lcy9g1319 | Lcy-Chr9:37952784 | 2.27E-39 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20657 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy9g1319 | K09286 | - | csv:101213540 | 223.787 |