Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1335 ATGGCTCAATTGCCCCCAAAAATACCCTCTTTCCCTCAAAATTGGCCTCATTTTCCTCCTCCTTCCATGCCTAATTTATCTCCTTCTCCTCCGCCGCCTCCTCCGCCCTCCTCCGCCCCCCATAACCCTTCCTGGGTCGATGACTTTCTCGACTTCTCCACCGCCCGCCGCGGCCTCCACCGGAGATCCATCAGCGACTCCATTGCTTTCCTCGAAACCCCATTTCCCGATGAATGCCGTAACTCCTCCGCCGCCGCCCTCCACCTCCATGCTCCTCCCCGCTTCGACCGCCTCGACGACGACCAGCTTATGTCCATGTTTTCCGACGACATTTCCATGGCGCCTCCCGCCTCCTCCAACCCTTCCTCTCCCTCCGACCAGAATAGTAATAACGATGAAAAGACGGCCGCGCCCGAGGCTCCGCCGCTGCATCCGATGAAGAATGAGCCTGGTGAGGTTGAAAGCTCCTCTTGCCAACTGCAGCCGCAATCTCAACCGCCGCCGCCGTCGTCCTCCGCCGGTGATAATACCATTGATCCCAAGCGAGTTAAGAGAATTTTGGCAAATCGACAATCAGCACAAAGGTCGAGAGTCAGAAAATTACAATACATTTCTGAGCTCGAGAGAAGTGTAACGACATTACAGACTGAAGTATCAGCATTGTCACCAAGAGTGGCATTTTTGGATCACCAAAGATTGATTCTAAATGTCGACAATAGTGCTCTTAAACAGAGAATTGCAGCTTTGGCTCAAGATAAGATTTTCAAAGATGCTCATCAAGAGGCATTAAAGAAGGAGATAGAGAGATTAAGGCAAGTTTACCACCAACAGAGTTTGAAGAAAATGGGAAGCAATCAGAATGGGGCGGAGGCGCCGTCGTCAGTGGAAGCGGCTCCGCCGCAAGTAGGAAGAACGCCGCCGCAGGCGGCTGAGACGGAGAAGGAGCAGGCTGTAAGTTGA 960 52.92 MAQLPPKIPSFPQNWPHFPPPSMPNLSPSPPPPPPPSSAPHNPSWVDDFLDFSTARRGLHRRSISDSIAFLETPFPDECRNSSAAALHLHAPPRFDRLDDDQLMSMFSDDISMAPPASSNPSSPSDQNSNNDEKTAAPEAPPLHPMKNEPGEVESSSCQLQPQSQPPPPSSSAGDNTIDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQQSLKKMGSNQNGAEAPSSVEAAPPQVGRTPPQAAETEKEQAVS 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 38118924 38121621 + Maker00016483 Lcy9g1335 642451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1335 319 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 184 199 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g1335 319 FunFam Basic leucine zipper 61 180 253 - -
Lcy9g1335 319 PANTHER BASIC LEUCINE ZIPPER 34 1 306 IPR052483 GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0045893(PANTHER)
Lcy9g1335 319 MobiDBLite consensus disorder prediction 89 178 - -
Lcy9g1335 319 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 179 231 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g1335 319 SUPERFAMILY Leucine zipper domain 181 235 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g1335 319 MobiDBLite consensus disorder prediction 1 41 - -
Lcy9g1335 319 MobiDBLite consensus disorder prediction 112 135 - -
Lcy9g1335 319 MobiDBLite consensus disorder prediction 1 46 - -
Lcy9g1335 319 Pfam bZIP transcription factor 181 225 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g1335 319 Coils Coil 260 280 - -
Lcy9g1335 319 CDD bZIP_plant_RF2 182 232 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy9g1335 319 Gene3D - 180 253 - -
Lcy9g1335 319 MobiDBLite consensus disorder prediction 277 319 - -
Lcy9g1335 319 MobiDBLite consensus disorder prediction 277 292 - -
Lcy9g1335 319 SMART brlzneu 177 241 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0522 Lcy-Chr4:6287019 Lcy9g1335 Lcy-Chr9:38118924 8.05E-75 dispersed
Lcy8g1404 Lcy-Chr8:40691570 Lcy9g1335 Lcy-Chr9:38118924 1.60E-43 dispersed
Lcy9g0965 Lcy-Chr9:32325539 Lcy9g1335 Lcy-Chr9:38118924 5.94E-09 dispersed
Lcy9g1335 Lcy-Chr9:38118924 Lcy7g1073 Lcy-Chr7:11487583 1.58E-10 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20659 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1335 - - - 0.0