Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy9g1335 | ATGGCTCAATTGCCCCCAAAAATACCCTCTTTCCCTCAAAATTGGCCTCATTTTCCTCCTCCTTCCATGCCTAATTTATCTCCTTCTCCTCCGCCGCCTCCTCCGCCCTCCTCCGCCCCCCATAACCCTTCCTGGGTCGATGACTTTCTCGACTTCTCCACCGCCCGCCGCGGCCTCCACCGGAGATCCATCAGCGACTCCATTGCTTTCCTCGAAACCCCATTTCCCGATGAATGCCGTAACTCCTCCGCCGCCGCCCTCCACCTCCATGCTCCTCCCCGCTTCGACCGCCTCGACGACGACCAGCTTATGTCCATGTTTTCCGACGACATTTCCATGGCGCCTCCCGCCTCCTCCAACCCTTCCTCTCCCTCCGACCAGAATAGTAATAACGATGAAAAGACGGCCGCGCCCGAGGCTCCGCCGCTGCATCCGATGAAGAATGAGCCTGGTGAGGTTGAAAGCTCCTCTTGCCAACTGCAGCCGCAATCTCAACCGCCGCCGCCGTCGTCCTCCGCCGGTGATAATACCATTGATCCCAAGCGAGTTAAGAGAATTTTGGCAAATCGACAATCAGCACAAAGGTCGAGAGTCAGAAAATTACAATACATTTCTGAGCTCGAGAGAAGTGTAACGACATTACAGACTGAAGTATCAGCATTGTCACCAAGAGTGGCATTTTTGGATCACCAAAGATTGATTCTAAATGTCGACAATAGTGCTCTTAAACAGAGAATTGCAGCTTTGGCTCAAGATAAGATTTTCAAAGATGCTCATCAAGAGGCATTAAAGAAGGAGATAGAGAGATTAAGGCAAGTTTACCACCAACAGAGTTTGAAGAAAATGGGAAGCAATCAGAATGGGGCGGAGGCGCCGTCGTCAGTGGAAGCGGCTCCGCCGCAAGTAGGAAGAACGCCGCCGCAGGCGGCTGAGACGGAGAAGGAGCAGGCTGTAAGTTGA | 960 | 52.92 | MAQLPPKIPSFPQNWPHFPPPSMPNLSPSPPPPPPPSSAPHNPSWVDDFLDFSTARRGLHRRSISDSIAFLETPFPDECRNSSAAALHLHAPPRFDRLDDDQLMSMFSDDISMAPPASSNPSSPSDQNSNNDEKTAAPEAPPLHPMKNEPGEVESSSCQLQPQSQPPPPSSSAGDNTIDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQQSLKKMGSNQNGAEAPSSVEAAPPQVGRTPPQAAETEKEQAVS | 319 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 38118924 | 38121621 | + | Maker00016483 | Lcy9g1335 | 642451 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy9g1335 | 319 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 184 | 199 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g1335 | 319 | FunFam | Basic leucine zipper 61 | 180 | 253 | - | - | |
Lcy9g1335 | 319 | PANTHER | BASIC LEUCINE ZIPPER 34 | 1 | 306 | IPR052483 | GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0045893(PANTHER) | |
Lcy9g1335 | 319 | MobiDBLite | consensus disorder prediction | 89 | 178 | - | - | |
Lcy9g1335 | 319 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 179 | 231 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g1335 | 319 | SUPERFAMILY | Leucine zipper domain | 181 | 235 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g1335 | 319 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
Lcy9g1335 | 319 | MobiDBLite | consensus disorder prediction | 112 | 135 | - | - | |
Lcy9g1335 | 319 | MobiDBLite | consensus disorder prediction | 1 | 46 | - | - | |
Lcy9g1335 | 319 | Pfam | bZIP transcription factor | 181 | 225 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g1335 | 319 | Coils | Coil | 260 | 280 | - | - | |
Lcy9g1335 | 319 | CDD | bZIP_plant_RF2 | 182 | 232 | IPR044759 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy9g1335 | 319 | Gene3D | - | 180 | 253 | - | - | |
Lcy9g1335 | 319 | MobiDBLite | consensus disorder prediction | 277 | 319 | - | - | |
Lcy9g1335 | 319 | MobiDBLite | consensus disorder prediction | 277 | 292 | - | - | |
Lcy9g1335 | 319 | SMART | brlzneu | 177 | 241 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy4g0522 | Lcy-Chr4:6287019 | Lcy9g1335 | Lcy-Chr9:38118924 | 8.05E-75 | dispersed | |
Lcy8g1404 | Lcy-Chr8:40691570 | Lcy9g1335 | Lcy-Chr9:38118924 | 1.60E-43 | dispersed | |
Lcy9g0965 | Lcy-Chr9:32325539 | Lcy9g1335 | Lcy-Chr9:38118924 | 5.94E-09 | dispersed | |
Lcy9g1335 | Lcy-Chr9:38118924 | Lcy7g1073 | Lcy-Chr7:11487583 | 1.58E-10 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20659 | None | None | None | None | Lcy | TF |
Pathway information
