Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1373 ATGGATTTGAAGAGTGTTCATGTTGATGTTGATGTTCATGTTCTTGTCTGTGGATTGCTGCTTTTCAACTGCTTCTTGGAATTTGGATCGGATGCCCAAACTCTGCCTGAACAAGAAGTGAGAGCCCTTCGAGAAATATCTGCAGAGCTAAAGAACTTAAATTGGAATGTCCACCAAAATTCTTGCATTAATGGCGACGGCTTTTTCAATAATTTTACCAGTTGGACTCTTATGAGAGAGGTCAACTGCACTTGCACTACGACTTGCAGCGTCACCAGCATACGGCTAAAGGGTCTTAATCTAGTTGGAGTTCTACCCGTAGCATTTGCAAATCTAACTCAACTACGAGAATTAGATCTCACTTACAATGTTATATCTGGATCGATCCCTAGGGAATTTGCTCGCATTCCTCTGGTTAAATTTTCCATGGTGGGAAACCAACTTAGTGGTCAGATTCCTTCAGAAATTGGTAATATTGCTTCACTTGAGGAACTGGTCTTGGAAGACAATCGGATTGGAGGAAGTCTTCCTGAAAGTCTCGGAAAACTAAGTCGCTTGAATAGACTACTTCTTTCTTCAAATAATATCACTGGGTCGATTCCAGAATCTTTTCGAAACTTGAGGAACTTGACTGATTTTCGGATGGATGGAAATAACATATCAGGAAAGATACCTGATTATATTGGCAACCGGACCAACCTTAGTTATCTTTTTATTCAAGGCACTTCTATGGAGAACCCCATTCCTCGTGCTATATCCGAATTGAAAAACTTAGTCTACCTGGTAATAAGTGATTTGAAGGGACCGCGGATAAGTTTCCCCAATTTGACTCAAATGGCATCTTTACAAACATTGGTCTTAAGAAATTGCTTAATCGAGGGTCCTATCCCTGATTATATTGGACAGTCTAATGAATTGAGAACTTTAGATCTAAGCTTCAACCGATTGAGCGGTCCAATTCCAGACACATTTCAAAATCTGTTGGTCAAAAAAACTGAGTTCTTGTTTCTGACCAACAACTCCTTGAGCGGCCAAGTACCGGATTGGATTATGAACGCTGGCAACAGCGGAAGAAGGAACATAGATTTATCTTACAACAATTTTACAGGGTTGCCTGCTTTCAGTTGCACACAGTCTAATAATGTGAACTTGATTTCCAGTTCAAGTGTGAAGAATGAAAATGCTGATTGGTGCTTGATGAAGGATCTCCCTTGCCCTACCAAGGATAGATTTCATTCGTTGTTCATTAATTGTGGAGGACGAAGTATGGAGTTTAATGGTACTAAATATGAAGGGGATGATAGTGAGGGTGGCAAATCTAGTTTCTTTTCTTCAGCTGAAAGATGGGGTTACAGTAGTACTGGTGTTTTCTTGAGAAATGACAGCCTTCCTTACAAAGTAGCAACTAGCAATGGCTCTGCTTCAGACATTTATGACACAGCTCGACTCTCACCCATTTCTCTCAAGTACTATGGATTTTGCTTGCAAAATGGAAGTTACAATGTCAAGCTTCACTTTGCTGAAATTATGTTTACTGCGGACCAAACCTATAAGAGCTTGGGAAAGCGCATATTTGATATCTCCATTCAAGGAAACTTGGTTTGGAAAGATTTTAACATTGTGGAGGAAGCTGGAGGTGTTGGTAAGAGCTTTATTTTGGAAGAGCCTAATGTTGTAGTGAATGGAAGCACTCTTGAGATCCACTTATATTGGGCTGTTCCACAGATAGGGGTGTATGGACCTCTAATATCCGCCATCACTGTGACACCAAACTTTGATGTGGGAACTAATGTGGAAAGTAGAGGGCTATCGGCTGGAGCTATAGCTGGCATTATTGTTGGTATTTTCGTGTTCGTTGTTTTAGTATTGGTTGTTCTTCGATGGAAGGGTTACTTAGGTGGAAAGAAAACTGAAGACGATGAACTTCGAGATCTAAAACTACAGACAGGTTATTTCAGTTTAAAACAAATCAAAGCAGCCACCAACAATTTTGATGCTACATATAAGATTGGCGAAGGAGGTTTTGGTCCTGTCTACAAGGGAGTACTATCAGATGGCACTTTGATTGCCGTCAAACAACTATCTTCTAAATCAAGGCAAGGGAACCGTGAATTCATCACAGAAATTGGCATGATATCTGCTGTACAACATCCAAATCTCGTTAGGCTTTATGGTTGTTGTATTGAAGGAAACCAATTATTGCTTATTTATGAGTATCTAGAGAACAATAATCTTGCACGTGCACTTTTTAGTCCCGATGAGCATTCTCTACATCTGGATTGGCCAATAAGAATGAAGATATGCTTGGGAATAGCAAAGGGTTTGGCTTACCTTCATGAAGAATCTAGATTGAAAATTGTTCACAGAGATATAAAAACTACTAACGTTCTGCTTGATGGAAGCTTGAATGCCAAGATCTCAGACTTTGGATTGGCTAAGCTTGATGAAGAGGATAAGACCCATATCAGCACAAGAATTGCAGGCACCATGTCTCTCTCTTTCCCTTTCTCTTTTTTTCTAATGCTTGGGTCACATTACTCAAAAGAGGAGGCCATGAGGATGCTTCATATAGCTCTGTTATGCACGAACCTGTCTCCGACTCTCAGACCATCCATGTCTTCAGTGGTTAGTATGCTTGAAGGTAAAATTGCAGTGGAAGTGTCAAACATCAAGCGCAACACAGCTGATCGAGATGCAAGGTTTAAAGCCTTTGAGAAGGTATCAGAAGACAGCCTGACAAGCATAATTTCAACCTCGTCGCAAGGTATTCAGATGCAGAGAAGCATGATAGCTGATGGGCCATGGATCGACTCTTCTACTTCTTCCACCCAAAACAGAGACGAGAGTCGAGATAATAAGGGCAGCTTGAAGGAAGTCATTTTGACTCCTTCATTGCATGAATATTCGATATTTTTTACACCCATAAAGCGAAGGCGGATGTCGGCTCTACCTCCATTTCCAACCTTTGTAGTTGCTTCCTTCCTCGTCTATTGCCTTCTTCCTGCTCTCGCTTCTCAACCTCCAATATTGCCTCCAGAAGAATTGAGAGCCCTTGAAGCAATATCTAAAGAGCTAAAGAAGTTAAATTGGACAGTCCACCAAAAATCTTGTGTTGATGGCGACGGCTTTCGCAATGAAACCATTGAGGGTGATAGGATCATGAGAGTGGTGCACTGCAATTGCTCCACAGATTCTTGCAGAGTCACCAGGATTCTGCTAAAGCGTCTCAATTTGGTTGGTGTTCTACCAACAGCATTTGCAAATCTTACTCAACTGCAAGAGCTAGATCTCAGTCGCAATTTTATAAATGGATCAATCTCTAAGGAGTTTGCTCGCATTCCTCTTGTTAAGTTGTAA 3357 40.9 MDLKSVHVDVDVHVLVCGLLLFNCFLEFGSDAQTLPEQEVRALREISAELKNLNWNVHQNSCINGDGFFNNFTSWTLMREVNCTCTTTCSVTSIRLKGLNLVGVLPVAFANLTQLRELDLTYNVISGSIPREFARIPLVKFSMVGNQLSGQIPSEIGNIASLEELVLEDNRIGGSLPESLGKLSRLNRLLLSSNNITGSIPESFRNLRNLTDFRMDGNNISGKIPDYIGNRTNLSYLFIQGTSMENPIPRAISELKNLVYLVISDLKGPRISFPNLTQMASLQTLVLRNCLIEGPIPDYIGQSNELRTLDLSFNRLSGPIPDTFQNLLVKKTEFLFLTNNSLSGQVPDWIMNAGNSGRRNIDLSYNNFTGLPAFSCTQSNNVNLISSSSVKNENADWCLMKDLPCPTKDRFHSLFINCGGRSMEFNGTKYEGDDSEGGKSSFFSSAERWGYSSTGVFLRNDSLPYKVATSNGSASDIYDTARLSPISLKYYGFCLQNGSYNVKLHFAEIMFTADQTYKSLGKRIFDISIQGNLVWKDFNIVEEAGGVGKSFILEEPNVVVNGSTLEIHLYWAVPQIGVYGPLISAITVTPNFDVGTNVESRGLSAGAIAGIIVGIFVFVVLVLVVLRWKGYLGGKKTEDDELRDLKLQTGYFSLKQIKAATNNFDATYKIGEGGFGPVYKGVLSDGTLIAVKQLSSKSRQGNREFITEIGMISAVQHPNLVRLYGCCIEGNQLLLIYEYLENNNLARALFSPDEHSLHLDWPIRMKICLGIAKGLAYLHEESRLKIVHRDIKTTNVLLDGSLNAKISDFGLAKLDEEDKTHISTRIAGTMSLSFPFSFFLMLGSHYSKEEAMRMLHIALLCTNLSPTLRPSMSSVVSMLEGKIAVEVSNIKRNTADRDARFKAFEKVSEDSLTSIISTSSQGIQMQRSMIADGPWIDSSTSSTQNRDESRDNKGSLKEVILTPSLHEYSIFFTPIKRRRMSALPPFPTFVVASFLVYCLLPALASQPPILPPEELRALEAISKELKKLNWTVHQKSCVDGDGFRNETIEGDRIMRVVHCNCSTDSCRVTRILLKRLNLVGVLPTAFANLTQLQELDLSRNFINGSISKEFARIPLVKL 1118
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 38561558 38583227 - Maker00016458 Lcy9g1373 642489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1373 1118 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 19 831 IPR051824 -
Lcy9g1373 1118 ProSiteProfiles Protein kinase domain profile. 664 936 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1373 1118 Pfam Leucine Rich Repeat 306 327 IPR001611 GO:0005515(InterPro)
Lcy9g1373 1118 Pfam Leucine Rich Repeat 1091 1111 IPR001611 GO:0005515(InterPro)
Lcy9g1373 1118 Pfam Leucine Rich Repeat 114 134 IPR001611 GO:0005515(InterPro)
Lcy9g1373 1118 Pfam Leucine Rich Repeat 281 301 IPR001611 GO:0005515(InterPro)
Lcy9g1373 1118 Gene3D Ribonuclease Inhibitor 1018 1118 IPR032675 -
Lcy9g1373 1118 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 633 739 - -
Lcy9g1373 1118 SMART serkin_6 664 904 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1373 1118 Pfam Malectin domain 414 586 IPR021720 -
Lcy9g1373 1118 Pfam Leucine rich repeat 161 220 IPR001611 GO:0005515(InterPro)
Lcy9g1373 1118 FunFam Os07g0541700 protein 740 829 - -
Lcy9g1373 1118 SUPERFAMILY L domain-like 1056 1113 - -
Lcy9g1373 1118 Gene3D - 412 591 - -
Lcy9g1373 1118 Gene3D Ribonuclease Inhibitor 36 268 IPR032675 -
Lcy9g1373 1118 SUPERFAMILY Protein kinase-like (PK-like) 650 893 IPR011009 -
Lcy9g1373 1118 Gene3D Transferase(Phosphotransferase) domain 1 740 838 - -
Lcy9g1373 1118 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 274 371 - -
Lcy9g1373 1118 Gene3D Ribonuclease Inhibitor 269 388 IPR032675 -
Lcy9g1373 1118 ProSitePatterns Serine/Threonine protein kinases active-site signature. 786 798 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g1373 1118 SUPERFAMILY L domain-like 86 370 - -
Lcy9g1373 1118 MobiDBLite consensus disorder prediction 934 955 - -
Lcy9g1373 1118 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 177 268 - -
Lcy9g1373 1118 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 411 591 - -
Lcy9g1373 1118 Gene3D Phosphorylase Kinase; domain 1 633 739 - -
Lcy9g1373 1118 SMART LRR_typ_2 279 303 IPR003591 -
Lcy9g1373 1118 SMART LRR_typ_2 1089 1112 IPR003591 -
Lcy9g1373 1118 SMART LRR_typ_2 183 206 IPR003591 -
Lcy9g1373 1118 SMART LRR_typ_2 305 326 IPR003591 -
Lcy9g1373 1118 SMART LRR_typ_2 112 135 IPR003591 -
Lcy9g1373 1118 SMART LRR_typ_2 207 231 IPR003591 -
Lcy9g1373 1118 Pfam Protein tyrosine and serine/threonine kinase 668 821 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy9g1373 Lcy-Chr9:38561558 Lcy9g1380 Lcy-Chr9:38709991 0 dispersed
Lcy9g1373 Lcy-Chr9:38561558 Lcy9g1374 Lcy-Chr9:38589392 1.64E-287 tandem
Lcy5g1952 Lcy-Chr5:42328488 Lcy9g1373 Lcy-Chr9:38561558 2.83E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66188 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1373 - - - 0.0