Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1374 GAACTAAAGAGTCAAAATCTAATCGGAGCTCTACCCGCAGCTTTTGCAGATCTGACTCAACTGCGTGTGTTGTCCTTGCGGGGGAACCGACTTACTGGTGAAATTCCTCGAGAAATCGGTGATATTGCTTCACTTCAGGAATTTCGAATAGATGGAAACAATATATCAGGAAAGCTACCCGAATTTATTGGCAATTGGACCAAACTTGAGAGACTGGATTTAAGCTTCAACAGATTAAATGGTACAATTCCAGGGGCATTACAGAATCTAGCAAAGCGTGATAAGCGTATCTTGTTTCTAAATGACAACTTGCTAACTGGTCAAGTTCCGAACTGGATTGTGGGAAGCCAAGGCAACATAGATTTATCTTACAACAGATTTACAGGGTCACCTGTTCCCAGTTCATGTCAAGAATCTACTAAAGTTGTTACTTGGTGCCTGAGAGGGGATATCCCTTGCAATAGAGAAGATCGCTTTCGTTCGTTGTTCATTAACTGTGGAGGAGACCAGATGGAGTTTGATGGTAATGTATATGAAAGAGATGCGAATAACGAAGGCAAATCCTATTTCTCTCCTATGAATGAGAAATGGGGTTACAGCAGTACCGGTGATTTCATGTTTAATGATACCGTTCCATACTTAACAAGTAGCAATGGCCCTGCTGCTTCAAGCATATATGCCACAGCTCGACTCGCGCCCGTTTCGCTTAAGTACTATGGATTTTGCTTACAAAGTGGAAGTTACAATGTGAAGCTTCACTTTGCTGAGATTATGTTTACTGCTGACCAAACCTTTGGCAGTCTGGGAAAGCGCATATTTGATATCTCAATTCAAAGAAACTTGGTTGAAAAAGATTTTAACATAGTGGAGAGAGCTGGAGGTGTTGGTAAGAACTTTACTCTGGAAGTGCCTAATGTTATAGTAACTGGCAGCACTCTTGAGATCCATTTATACTGGGCTGGTAAAGGGACAAATGCCATTCCATTCAAAGGGGTGCATGGACCTCTAATATCTGCAATCACAGTTACATCAAACTTTGGTGATGATCAGGCAACTCTATCAGCTGGAGCTATTGCTGGCATTGTTGTTGGTAGTATTGCGTTCGTTGTTTTAGTATTGGTTGTTCTTCGAAGGAAGGGTTACTTAGGCGGGAAAGAAACTGAAGACAAAGAACTTCGGGACCTAAAGTTACAGACAGGTTATTTCAGTTTAAGACAAATCAAAGCAGCAACCAAAAATTTTGACTCAGCATATAAAATAGGCGAGGGAGGTTTTGGTCCTGTCTACAAGGGAATACTGTCGGATGGCACTTCAATCGCTGTAAAGCAGCTATCCTCTAAATCAAGACAAGGGAACCGTGAATTCATCACTGAAATCGGAATGATATCTGTATTACAACATCCGAATCTTGTTAAGCTTTATGGTTGTTGTATTGAAGGAAACCAATTATTGCTTATTTATGAGTATCTAGAGAACAATAATCTTGCTCGTGCACTATTTAGTCCTGAAGAGCACTCACTACATTTAGATTGGTCGGTGAGAATGAAGATATGCTTGGGGGTAGCAAGGGGATTGGCTTACCTTCATGAAGAATCTAGATTAAAAATTGTTCATAGAGATATAAAAGCTACCAATGTGTTGCTTGATAAAAGCCTTAATGCCAAGATCTCAGACTTTGGATTGGCTAAGCTTGACGAAGAGGATAACACCCATATCAGCACAAGAATTGCGGGCACGAGAGGTTACATGGCTCCTGAATACGCAACGAGGGGTTATTTGACTGATAAAGCCGATGTTTATAGCTTTGGAGTTGTGGCCTTAGAAATTGTTAGTGGAAAAAGCAACACAAATTACAAACCAAAAGCAGAGTTCGTTTATCTTCTAGACTTGGCTATTGTTCTACAAGAAGAAGGAAAGCTACTCGAACTTGTTGACCCGAGTCTTGGCTCAGAATACTCAAAAGAAGAAGCCATGAGGATGCTTCATATCGCTCTGTTATGCACGAACCTGTCTCCAACTCTCAGACCATCCATGTCTTCCGTGGTTAGCATGCTTGAAGGTAAAAGTCCAATTGAAGTGTCGAACATCAGACAAAATGTAGCTGATCGAGATGCAAGGCTGAAAGCTCTTGAAATGCTGTCACAAGACAGCCTGACAAGCATTTCAACATCATCACAAGGCATTCAAATGCAGAGAAGCATGTTAATTGATGGGCCATGGATTGACTCATCGTCTACTTCTTCCCAAAACAAGGACGAGACTCCAACTACAAGTCTCCTTCGAGATTGA 2289 41.24 ELKSQNLIGALPAAFADLTQLRVLSLRGNRLTGEIPREIGDIASLQEFRIDGNNISGKLPEFIGNWTKLERLDLSFNRLNGTIPGALQNLAKRDKRILFLNDNLLTGQVPNWIVGSQGNIDLSYNRFTGSPVPSSCQESTKVVTWCLRGDIPCNREDRFRSLFINCGGDQMEFDGNVYERDANNEGKSYFSPMNEKWGYSSTGDFMFNDTVPYLTSSNGPAASSIYATARLAPVSLKYYGFCLQSGSYNVKLHFAEIMFTADQTFGSLGKRIFDISIQRNLVEKDFNIVERAGGVGKNFTLEVPNVIVTGSTLEIHLYWAGKGTNAIPFKGVHGPLISAITVTSNFGDDQATLSAGAIAGIVVGSIAFVVLVLVVLRRKGYLGGKETEDKELRDLKLQTGYFSLRQIKAATKNFDSAYKIGEGGFGPVYKGILSDGTSIAVKQLSSKSRQGNREFITEIGMISVLQHPNLVKLYGCCIEGNQLLLIYEYLENNNLARALFSPEEHSLHLDWSVRMKICLGVARGLAYLHEESRLKIVHRDIKATNVLLDKSLNAKISDFGLAKLDEEDNTHISTRIAGTRGYMAPEYATRGYLTDKADVYSFGVVALEIVSGKSNTNYKPKAEFVYLLDLAIVLQEEGKLLELVDPSLGSEYSKEEAMRMLHIALLCTNLSPTLRPSMSSVVSMLEGKSPIEVSNIRQNVADRDARLKALEMLSQDSLTSISTSSQGIQMQRSMLIDGPWIDSSSTSSQNKDETPTTSLLRD 762
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 38589392 38596434 - Maker00016981 Lcy9g1374 642490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1374 762 ProSitePatterns Serine/Threonine protein kinases active-site signature. 536 548 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g1374 762 Pfam Malectin domain 162 340 IPR021720 -
Lcy9g1374 762 FunFam Putative LRR receptor-like serine/threonine-protein kinase 490 697 - -
Lcy9g1374 762 Gene3D Phosphorylase Kinase; domain 1 382 489 - -
Lcy9g1374 762 Gene3D Transferase(Phosphotransferase) domain 1 490 708 - -
Lcy9g1374 762 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 36 131 - -
Lcy9g1374 762 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 159 345 - -
Lcy9g1374 762 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 2 700 IPR051824 -
Lcy9g1374 762 Pfam Protein tyrosine and serine/threonine kinase 418 684 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g1374 762 Pfam Leucine Rich Repeat 68 90 IPR001611 GO:0005515(InterPro)
Lcy9g1374 762 Pfam Leucine Rich Repeat 20 40 IPR001611 GO:0005515(InterPro)
Lcy9g1374 762 Pfam Leucine Rich Repeat 44 66 IPR001611 GO:0005515(InterPro)
Lcy9g1374 762 ProSiteProfiles Protein kinase domain profile. 414 692 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1374 762 SUPERFAMILY L domain-like 5 132 - -
Lcy9g1374 762 Gene3D Ribonuclease Inhibitor 1 156 IPR032675 -
Lcy9g1374 762 MobiDBLite consensus disorder prediction 739 762 - -
Lcy9g1374 762 SUPERFAMILY Protein kinase-like (PK-like) 398 690 IPR011009 -
Lcy9g1374 762 CDD STKc_IRAK 420 687 - -
Lcy9g1374 762 Gene3D - 161 346 - -
Lcy9g1374 762 SMART serkin_6 414 685 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1374 762 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 383 489 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy9g0417 Lcy-Chr9:11716416 Lcy9g1374 Lcy-Chr9:38589392 4.74E-160 dispersed
Lcy9g0903 Lcy-Chr9:30329421 Lcy9g1374 Lcy-Chr9:38589392 1.32E-51 dispersed
Lcy9g1374 Lcy-Chr9:38589392 Lcy9g1380 Lcy-Chr9:38709991 0 dispersed
Lcy9g1373 Lcy-Chr9:38561558 Lcy9g1374 Lcy-Chr9:38589392 1.64E-287 tandem
Lcy9g1374 Lcy-Chr9:38589392 Lcy9g1375 Lcy-Chr9:38622455 0 tandem
Lcy5g1958 Lcy-Chr5:42435742 Lcy9g1374 Lcy-Chr9:38589392 5.58E-78 wgd
Lcy6g0663 Lcy-Chr6:6313621 Lcy9g1374 Lcy-Chr9:38589392 4.30E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66189 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1374 - - - 0.0