Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy9g1375 ATGGTTCTGATTGTGGATGTGACAGTGAGAGCCCTTCGAGCAATATCTGCAGAGCTAAAGAACTTAAATTGGAACGTGGACCAAAATTCCTGCATTAATGGTGATGGCTTTTCCAATATATTTATCAATGATACCCATGTAAGAGAGGTCAATTGCACTTGTAATACAACTAGTTGCAGCATCACCAGCATGCGGCTAAAGGGTCAAAATCTTGATGGAATTCTACCAGCAGCATTTGCAGATCTGACTCAACTGCGTGAGTTAGATCTCACTCGCAATTTTATATCTGGATCAATTCCTAAGGAGTTTGCTCGCATTCCTCTTGTTAAGTTTTCCTTGCCGGGAAACCGACTTACCGGTGAAATTCCTCGAGAAATTGGTGATATTGCTTCACTTCAGGAACTGGTCTTGGAAAACAATCAGCTTGGAGGAAATCTTCCTGAAAGCCTCGGCAGTCTGAGCCGCTTGCAAAGACTAGTTCTTTCCGCAAATAATTTCATAGGGTTGATTCCAACATCTTATGGAAACTTGAAGAACTTGACTGATTTTCGGATAGATGGAAATGATGTATCAGGAAAGCTTCCCGAATTTATTGGTAATTGGACCAAACTTAAGAGACTGGATATTCAAGGAACTTCTATGGAGACTCCTATTCCTCGTGCCATATCCGAGCTGAAAAATTTAACTGAACTGAGGATAACCGATTTGAAGGGACCAACAACAAGTTTTCCCAAGTTGATTCAATTGACATCTTTACAAGATTTGGTCCTAAGAAATTGCTTAATTGACGATCGTATTCCTGAATACTTAGGACACTTTACTAATTTAACGACTATAGATCTAAGCTTCAACAGATTGAGTGGTCCAATTCCAGAGACATTTAAGAATCCTTTTGCCCAAAAAACTGGGTTCATGTTTCTGGCTAACAACTCGTTAACCGGCCAAGTACCCACTTGGATTATGAACAGCCGAAGTTACATAGATTTATCTTACAACAATTTTACAGGGTCGAATGTTCCCAATTGTGAGCAGTCTGATGTACTGAACTTAGTTTCAAGTTACTCATCTACAATGAATGAAAATGTTGAATGGTGCCTGAGGAAGGATCTCCCTTGCCCTAGAGAAGCTCGATTTCATTCATTGTTCATTAACTGTGGAGGAAAACGCATGATGTTGGATGGTAATGAATACGAAGACGATCTGGCAACCAATGGTCGCAAATCCAGTTCGTTTGATTTTTCAAAAGAAAGATGGGGTTACAGCATTACTGGTGTTTTCTTGGGAAGTAAAGGCCTTCCTTACACTGTTACAAATACCACTGTGTCAGCTCCAGGCGTCTATGAGACCGCTCGAGTTGCACCCGTTTCGCTCAAGTACTATGGATTTTGCTTGCAGAGTGGAAGTTACAATGTGAAGCTTCACTTTGCTGAAATTATGTTTACTGCTGACCAAACCTTTAGCAGTTTGGGAAAGCGCATATTTGATATCTCAATTCAAGGAAACTTGGTTAAAAAAGATTTGAACATAATGAAGGAAGCTGGAGGTGTTGGTAAGAGCTTTATTTTGGAAGAGCCTAATATTCAAGTAACTGGCAGCACTCTCGAGATCCACTTATATTGGGCTGGTAAAGGAACAAATGGTATTCCTGTTACAGGGGTTCATGGTCCTCTAATATCTGCGATTACAGTCACACCCAACTTACAGGCAGGAGGGCTATCGACGGGAGCTATTACTGGCATTGTCGTTGCTAGTTTTGTGTTTGTCGTTTTAGTATTGGTTGTTCTTCGGAGGAAGGGTTACTTAGGCATGAAGGAAATTAAAGACAAAGAACTTCAGGATCTAAAATTACAAACGGGATATTTTAGTTTAAGACAAATCAAAGAAGCAACCAACAACTTTGATTCGGCATATAAGATTGGCGAGGGAGGTTTTGGCCCTGTCTACAAGGGAGTACTGCCCGATGGAACTTCAATTGCTGTAAAGCAACTATCCTCTAAATCAAGACAAGGGAATCGTGAGTTCGTTACCGAAATCGGCATGATATCTGCATTACATCATCCAAATCTTGTTAAGCTTTATGGTTGTTGTATTGAAGGAAATCAGTTATTGCTTATTTATGAGTATCTAGAGAACAATAGTCTTGCCCGTGCACTTTTTAGCCCCGAGAGACATACGCTACATTTGGATTGGCCAATAAGAATGAAGATATGCGTAGGAGTAGCAAAGGGGTTGGCTTACCTTCATGAAGAATCTAGATTGAAAATTGTTCACAGAGATATAAAAGCTACTAACATTCTACTGGATGGAAACTTGAATGCCAAGATCTCAGACTTTGGGTTGGCTAAACTTTATGAAGAGGAGAACACTCATATTAGCACAAGAGTTGCAGGCACCATAGGTTACATGGCTCCTGAGTATGCAATGAGGGGTTATCTGACTGATAAAGCTGACGTTTATAGCTTTGGAGTTGTGGCCTTAGAGATTGTCAGTGGAAAAAGTAATACGACCTACAGACTAAAAGAGGATTTCGTTTATCTTCTTGACTGGGCTAATGTTCTACAAGAGGAAGGGAACCTACTCGAGCTTGTTGATCCGAGTCTTGGCTCACATTACTCACAAGAAGAGGTCATGAGGATGCTTCATATAGCTCTGTTATGCACGAACTTGTCTCCGCCTCTTAGACCATCCATGTCTTCTGTAGTTAGCATGCTTGAAGGTAAAATTGAAATTGATGTATCAAACATCAAGGGCAACATAGCTAATCGAGGTGCAAGGTTCAAAGCCTTTGAAAATTTGTCACAAGACAACCTAACAAGCATTTCAACGTCATTGCAAGGCATTCAGATGCAAAGAAGCATGTTAATTGGCGGGTCATGGATTGACTCATCATCTAATTCCACCCAAAACAGAGACGAGACTCGAGAGTATTATTCAACTAGAAGTCTCCTTGGAGATTGA 2958 40.53 MVLIVDVTVRALRAISAELKNLNWNVDQNSCINGDGFSNIFINDTHVREVNCTCNTTSCSITSMRLKGQNLDGILPAAFADLTQLRELDLTRNFISGSIPKEFARIPLVKFSLPGNRLTGEIPREIGDIASLQELVLENNQLGGNLPESLGSLSRLQRLVLSANNFIGLIPTSYGNLKNLTDFRIDGNDVSGKLPEFIGNWTKLKRLDIQGTSMETPIPRAISELKNLTELRITDLKGPTTSFPKLIQLTSLQDLVLRNCLIDDRIPEYLGHFTNLTTIDLSFNRLSGPIPETFKNPFAQKTGFMFLANNSLTGQVPTWIMNSRSYIDLSYNNFTGSNVPNCEQSDVLNLVSSYSSTMNENVEWCLRKDLPCPREARFHSLFINCGGKRMMLDGNEYEDDLATNGRKSSSFDFSKERWGYSITGVFLGSKGLPYTVTNTTVSAPGVYETARVAPVSLKYYGFCLQSGSYNVKLHFAEIMFTADQTFSSLGKRIFDISIQGNLVKKDLNIMKEAGGVGKSFILEEPNIQVTGSTLEIHLYWAGKGTNGIPVTGVHGPLISAITVTPNLQAGGLSTGAITGIVVASFVFVVLVLVVLRRKGYLGMKEIKDKELQDLKLQTGYFSLRQIKEATNNFDSAYKIGEGGFGPVYKGVLPDGTSIAVKQLSSKSRQGNREFVTEIGMISALHHPNLVKLYGCCIEGNQLLLIYEYLENNSLARALFSPERHTLHLDWPIRMKICVGVAKGLAYLHEESRLKIVHRDIKATNILLDGNLNAKISDFGLAKLYEEENTHISTRVAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGKSNTTYRLKEDFVYLLDWANVLQEEGNLLELVDPSLGSHYSQEEVMRMLHIALLCTNLSPPLRPSMSSVVSMLEGKIEIDVSNIKGNIANRGARFKAFENLSQDNLTSISTSLQGIQMQRSMLIGGSWIDSSSNSTQNRDETREYYSTRSLLGD 985
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 38622455 38640787 - Maker00016492 Lcy9g1375 642491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy9g1375 985 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 170 237 - -
Lcy9g1375 985 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 17 928 IPR051824 -
Lcy9g1375 985 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 378 566 - -
Lcy9g1375 985 SUPERFAMILY Protein kinase-like (PK-like) 617 907 IPR011009 -
Lcy9g1375 985 FunFam Putative LRR receptor-like serine/threonine-protein kinase 709 916 - -
Lcy9g1375 985 Gene3D Ribonuclease Inhibitor 28 235 IPR032675 -
Lcy9g1375 985 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 56 146 - -
Lcy9g1375 985 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 602 708 - -
Lcy9g1375 985 SUPERFAMILY L domain-like 41 296 - -
Lcy9g1375 985 Gene3D - 379 566 - -
Lcy9g1375 985 ProSitePatterns Serine/Threonine protein kinases active-site signature. 755 767 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g1375 985 Pfam Leucine Rich Repeat 131 153 IPR001611 GO:0005515(InterPro)
Lcy9g1375 985 Pfam Leucine Rich Repeat 84 104 IPR001611 GO:0005515(InterPro)
Lcy9g1375 985 Pfam Leucine Rich Repeat 275 296 IPR001611 GO:0005515(InterPro)
Lcy9g1375 985 MobiDBLite consensus disorder prediction 963 985 - -
Lcy9g1375 985 CDD STKc_IRAK 639 906 - -
Lcy9g1375 985 Gene3D Ribonuclease Inhibitor 236 349 IPR032675 -
Lcy9g1375 985 Gene3D Phosphorylase Kinase; domain 1 599 708 - -
Lcy9g1375 985 SMART serkin_6 633 904 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1375 985 Pfam Protein tyrosine and serine/threonine kinase 637 903 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy9g1375 985 ProSiteProfiles Protein kinase domain profile. 633 908 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy9g1375 985 Gene3D Transferase(Phosphotransferase) domain 1 709 921 - -
Lcy9g1375 985 Pfam Malectin domain 381 561 IPR021720 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0748 Lcy-Chr4:8992338 Lcy9g1375 Lcy-Chr9:38622455 2.77E-244 dispersed
Lcy7g1184 Lcy-Chr7:13874394 Lcy9g1375 Lcy-Chr9:38622455 2.69E-87 dispersed
Lcy9g1375 Lcy-Chr9:38622455 Lcy9g1380 Lcy-Chr9:38709991 0 dispersed
Lcy9g1374 Lcy-Chr9:38589392 Lcy9g1375 Lcy-Chr9:38622455 0 tandem
Lcy9g1375 Lcy-Chr9:38622455 Lcy9g1376 Lcy-Chr9:38653960 1.70E-107 tandem
Lcy5g0118 Lcy-Chr5:1200869 Lcy9g1375 Lcy-Chr9:38622455 8.77E-93 transposed
Lcy6g0645 Lcy-Chr6:6125235 Lcy9g1375 Lcy-Chr9:38622455 0 transposed
Lcy5g1815 Lcy-Chr5:40932934 Lcy9g1375 Lcy-Chr9:38622455 3.74E-20 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66190 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy9g1375 - - - 0.0