Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy9g1376 | ATGAAGATATGCTTGGGAATAGCAAAGGGATTGGCTTACCTTCACGAAGAATCTATATTGAAAATTGTTCACCGCGATATTAAAGCTACCAATGTGCTCCTTGATGGAAAATTGAATGCCAAGATCTCAGACTTTGGGTTAGCAAAGGTGGATGAACAAGAGAACACTCATATCAGCACTAGAGTTGCAGGCACAATAGGCTACATGGCTCCCAAATATGCAATGAGGGGTTATTTGACCGACAAAACCGATGTTTATAGCTTTGGAGTTGTGGCCTTAGAAATTGTCAGTGGAAAAAGTAACGCAAATTATAGACCGAAAGAGGAGTTTATCTATCTTATTGATTGGGTAATCGATGAACTTTATAGTTCTTCCTCTTTCGATATTATTTTAGCAAGTGATTGGCCTATTTTCTTTAGGAAGGGAACTTACTCGACCTTGTTGATCCAAGACTTGGCTCACAATACTCAAAAGAAGAGGCCATTCTTATGCACGAACCTGTCTCCGACTCTCAGACCATCCATGTCTTCAGTGGTTAGCATGTTGGAAGGTAAAATTGCAATTGAAATGTCGAACATCAAGCGCAACGTAGCTAAACGAGATGCAAGGTTCAAAGCCTTTGAGAAGCTATCGCAAGAAAGTCTGACAAGCATTTCAATGTCACCACAAGGCATTCAGATGCAGAGAAGCATGTTAATTGACGGGCCATGGATTGACTCATTATCTACTTCCACCCAAGACAAGGATAAGACTCGAGAGTACTCTTTAACTAGCAATCTCTTGGGAGATTGA | 792 | 40.66 | MKICLGIAKGLAYLHEESILKIVHRDIKATNVLLDGKLNAKISDFGLAKVDEQENTHISTRVAGTIGYMAPKYAMRGYLTDKTDVYSFGVVALEIVSGKSNANYRPKEEFIYLIDWVIDELYSSSSFDIILASDWPIFFRKGTYSTLLIQDLAHNTQKKRPFLCTNLSPTLRPSMSSVVSMLEGKIAIEMSNIKRNVAKRDARFKAFEKLSQESLTSISMSPQGIQMQRSMLIDGPWIDSLSTSTQDKDKTREYSLTSNLLGD | 263 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 38653960 | 38654956 | - | Maker00016113 | Lcy9g1376 | 642492 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy9g1376 | 263 | ProSiteProfiles | Protein kinase domain profile. | 1 | 175 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lcy9g1376 | 263 | Gene3D | Transferase(Phosphotransferase) domain 1 | 1 | 200 | - | - | |
| Lcy9g1376 | 263 | FunFam | Os07g0541700 protein | 1 | 65 | - | - | |
| Lcy9g1376 | 263 | SMART | serkin_6 | 1 | 171 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lcy9g1376 | 263 | Pfam | Protein kinase domain | 2 | 161 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lcy9g1376 | 263 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 22 | 34 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Lcy9g1376 | 263 | PANTHER | LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED | 1 | 208 | IPR051824 | - | |
| Lcy9g1376 | 263 | SUPERFAMILY | Protein kinase-like (PK-like) | 2 | 206 | IPR011009 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy9g1376 | Lcy-Chr9:38653960 | Lcy9g1380 | Lcy-Chr9:38709991 | 6.22E-107 | dispersed | |
| Lcy9g1375 | Lcy-Chr9:38622455 | Lcy9g1376 | Lcy-Chr9:38653960 | 1.70E-107 | tandem |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 66191 | None | None | None | None | Lcy | PK |
Pathway information